Wall clock time and date at job start Mon Mar 30 2020 03:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00184 * 2 1 4 4 H 1.08999 * 109.57460 * 29.83719 * 3 2 1 5 5 C 1.53095 * 109.52292 * 269.68399 * 3 2 1 6 6 O 1.42911 * 109.41401 * 297.70189 * 5 3 2 7 7 C 1.42899 * 114.09510 * 298.84512 * 6 5 3 8 8 C 1.53090 * 109.42045 * 61.15610 * 7 6 5 9 9 C 1.53173 * 109.16119 * 302.38920 * 8 7 6 10 10 H 1.08997 * 109.54591 * 297.02170 * 9 8 7 11 11 N 1.46908 * 109.54164 * 176.84587 * 9 8 7 12 12 C 1.46900 * 110.99827 * 85.00161 * 11 9 8 13 13 H 1.08999 * 109.46853 * 325.00087 * 12 11 9 14 14 C 1.53001 * 109.47088 * 85.00130 * 12 11 9 15 15 C 1.52992 * 109.47083 * 205.00117 * 12 11 9 16 16 C 1.50700 * 109.47257 * 64.99908 * 15 12 11 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 12 18 18 C 1.37885 * 120.00047 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 359.72512 * 18 16 15 21 21 H 1.48498 * 109.46909 * 90.00086 * 20 18 16 22 22 H 1.48497 * 109.46701 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46867 * 330.00101 * 20 18 16 24 24 H 1.08993 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47671 * 300.00560 * 1 2 3 26 26 H 1.09002 * 109.47375 * 59.99933 * 1 2 3 27 27 H 1.08994 * 109.48124 * 177.71966 * 5 3 2 28 28 H 1.08997 * 109.49060 * 57.68945 * 5 3 2 29 29 H 1.09006 * 109.48168 * 301.17032 * 7 6 5 30 30 H 1.09006 * 109.48549 * 181.14885 * 7 6 5 31 31 H 1.08999 * 109.52380 * 182.48420 * 8 7 6 32 32 H 1.08997 * 109.57238 * 62.32932 * 8 7 6 33 33 H 1.00899 * 110.99746 * 321.04935 * 11 9 8 34 34 H 1.08999 * 109.47230 * 179.97438 * 14 12 11 35 35 H 1.09008 * 109.47061 * 299.99752 * 14 12 11 36 36 H 1.08998 * 109.47078 * 59.99301 * 14 12 11 37 37 H 1.09004 * 109.47330 * 304.99931 * 15 12 11 38 38 H 1.08997 * 109.47279 * 185.00418 * 15 12 11 39 39 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5110 5 6 2.2256 1.7696 -1.4429 6 8 3.1434 0.8882 -2.0934 7 6 4.4380 0.8451 -1.4900 8 6 4.3116 0.3439 -0.0490 9 6 3.3606 1.2646 0.7219 10 1 3.7821 2.2688 0.7670 11 7 3.1740 0.7483 2.0845 12 6 4.2451 1.2143 2.9753 13 1 5.1804 1.2733 2.4188 14 6 3.8883 2.5983 3.5213 15 6 4.4044 0.2329 4.1381 16 6 4.8750 -1.0982 3.6111 17 1 5.0432 -1.2310 2.5526 18 6 5.0899 -2.1469 4.4802 19 7 5.5011 -3.3084 4.0204 20 14 4.8050 -1.9153 6.3118 21 1 3.3976 -2.2564 6.6408 22 1 5.7204 -2.8043 7.0714 23 1 5.0705 -0.5011 6.6791 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 2.6313 2.7812 -1.4426 28 1 1.2738 1.7598 -1.9740 29 1 4.8727 1.8447 -1.4904 30 1 5.0802 0.1693 -2.0550 31 1 5.2921 0.3522 0.4269 32 1 3.9153 -0.6715 -0.0491 33 1 3.1161 -0.2590 2.0847 34 1 4.6828 2.9439 4.1826 35 1 3.7748 3.2976 2.6928 36 1 2.9528 2.5394 4.0776 37 1 3.4455 0.1062 4.6407 38 1 5.1364 0.6231 4.8452 39 1 5.6519 -4.0462 4.6318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695775940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:48 Heat of formation + Delta-G solvation = -100.471058 kcal Electronic energy + Delta-G solvation = -18914.775629 eV Core-core repulsion = 16050.167478 eV Total energy + Delta-G solvation = -2864.608151 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.71677 -36.73019 -36.56690 -33.16264 -31.94099 -30.33235 -28.61184 -27.84833 -26.37479 -23.82169 -23.12903 -22.33660 -19.88069 -19.39423 -16.77200 -16.52971 -16.36551 -15.56647 -15.49378 -14.87550 -14.46448 -14.34802 -14.00645 -13.60481 -13.12061 -12.54289 -12.49601 -12.26894 -12.10331 -11.85741 -11.58838 -11.26952 -11.15036 -11.01910 -10.91207 -10.57187 -10.46628 -10.14947 -9.89501 -9.80818 -9.48988 -9.19232 -8.88625 -8.53776 -7.64354 -6.04563 -4.02836 3.31995 3.39146 3.42757 3.84791 4.19844 4.45537 4.63819 4.91058 5.09037 5.16586 5.30889 5.39342 5.42540 5.49724 5.51516 5.56403 5.67886 5.69928 5.80999 5.84505 5.92838 6.03875 6.10168 6.18054 6.28793 6.43949 6.65720 6.71497 6.77481 7.18236 7.24148 7.29770 7.53530 7.77434 7.92093 8.29397 8.50700 8.98025 9.58053 11.08330 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.006588 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.022999 B = 4249.356337 C = 4325.150628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.068 3.932 4 H 0.070 0.930 5 C 0.040 3.960 6 O -0.375 6.375 7 C 0.065 3.935 8 C -0.181 4.181 9 C 0.093 3.907 10 H 0.078 0.922 11 N -0.673 5.673 12 C 0.094 3.906 13 H 0.035 0.965 14 C -0.138 4.138 15 C -0.016 4.016 16 C -0.522 4.522 17 H 0.071 0.929 18 C 0.069 3.931 19 N -0.901 5.901 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.266 1.266 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.054 0.946 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.366 0.634 34 H 0.048 0.952 35 H 0.038 0.962 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.692 11.450 -8.405 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.009 3.991 4 H 0.088 0.912 5 C -0.037 4.037 6 O -0.293 6.293 7 C -0.012 4.012 8 C -0.220 4.220 9 C -0.019 4.019 10 H 0.096 0.904 11 N -0.307 5.307 12 C -0.015 4.015 13 H 0.053 0.947 14 C -0.196 4.196 15 C -0.054 4.054 16 C -0.560 4.560 17 H 0.089 0.911 18 C -0.132 4.132 19 N -0.539 5.539 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.191 1.191 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.189 0.811 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.011 11.469 -8.293 15.795 hybrid contribution 0.513 -0.212 0.941 1.092 sum -6.498 11.258 -7.352 14.934 Atomic orbital electron populations 1.22724 0.82013 1.02451 0.99125 1.88014 1.18690 1.26420 1.94702 1.22839 0.95823 0.86044 0.94396 0.91198 1.23094 0.94001 0.92807 0.93847 1.87921 1.22363 1.65470 1.53587 1.22560 0.84536 1.00038 0.94066 1.22860 1.01347 1.02089 0.95683 1.21613 0.92203 0.98175 0.89861 0.90356 1.60618 1.46217 1.18642 1.05243 1.21414 0.91396 0.94130 0.94601 0.94657 1.21853 1.01120 0.96865 0.99780 1.19756 0.96763 0.94863 0.94002 1.21092 1.45170 0.93951 0.95826 0.91053 1.25007 0.94462 0.95050 0.98722 1.69920 1.46518 1.02287 1.35196 0.86771 0.78229 0.78333 0.85860 1.20304 1.21565 1.19117 0.89961 0.94092 0.95004 0.92749 0.89185 0.93787 0.89080 0.90643 0.89720 0.81059 0.93307 0.94295 0.92699 0.96179 0.96192 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.82 101.05 1.09 1.52 16 2 O -0.36 -5.88 9.54 -42.71 -0.41 -6.29 16 3 C 0.07 0.98 2.64 -26.59 -0.07 0.91 16 4 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 5 C 0.04 0.51 6.49 37.21 0.24 0.75 16 6 O -0.38 -5.67 10.70 -42.71 -0.46 -6.12 16 7 C 0.07 0.92 6.84 37.20 0.25 1.17 16 8 C -0.18 -3.00 5.22 -26.60 -0.14 -3.14 16 9 C 0.09 1.48 2.15 -67.53 -0.15 1.34 16 10 H 0.08 1.16 7.12 -51.93 -0.37 0.79 16 11 N -0.67 -12.78 5.88 -99.55 -0.59 -13.36 16 12 C 0.09 1.86 2.41 -67.72 -0.16 1.69 16 13 H 0.04 0.72 7.15 -51.93 -0.37 0.35 16 14 C -0.14 -2.28 9.40 37.16 0.35 -1.93 16 15 C -0.02 -0.38 3.64 -27.89 -0.10 -0.48 16 16 C -0.52 -14.46 8.67 -34.44 -0.30 -14.76 16 17 H 0.07 2.11 7.73 -52.49 -0.41 1.71 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 19 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 20 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 24 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.03 0.33 7.86 -51.93 -0.41 -0.07 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.07 1.32 7.48 -51.93 -0.39 0.93 16 32 H 0.08 1.64 7.77 -51.93 -0.40 1.23 16 33 H 0.37 8.08 6.88 -39.29 -0.27 7.81 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.57 7.43 -51.92 -0.39 0.18 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.02 0.48 7.58 -51.93 -0.39 0.09 16 38 H 0.02 0.47 7.19 -51.93 -0.37 0.10 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 307.15 15.07 4.63 4.63 Total: -1.00 -30.50 307.15 -6.50 -37.00 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.71 Total: 4.83 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 0.92 Total: -11.04 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.19 Total: -40.14 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -0.86 Total: -12.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.50 -6.50 -37.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.468 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds