Wall clock time and date at job start Mon Mar 30 2020 03:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42902 * 114.00184 * 2 1 4 4 H 1.08999 * 109.57460 * 29.83719 * 3 2 1 5 5 C 1.53095 * 109.52292 * 269.68399 * 3 2 1 6 6 O 1.42911 * 109.41401 * 297.70189 * 5 3 2 7 7 C 1.42899 * 114.09510 * 298.84512 * 6 5 3 8 8 C 1.53090 * 109.42045 * 61.15610 * 7 6 5 9 9 C 1.53173 * 109.16119 * 302.38920 * 8 7 6 10 10 H 1.08997 * 109.54591 * 297.02170 * 9 8 7 11 11 N 1.46908 * 109.54164 * 176.84587 * 9 8 7 12 12 C 1.46900 * 110.99827 * 85.00161 * 11 9 8 13 13 H 1.08999 * 109.46853 * 325.00087 * 12 11 9 14 14 C 1.53001 * 109.47088 * 85.00130 * 12 11 9 15 15 C 1.52992 * 109.47083 * 205.00117 * 12 11 9 16 16 C 1.50700 * 109.47257 * 64.99908 * 15 12 11 17 17 H 1.07999 * 119.99988 * 359.97438 * 16 15 12 18 18 C 1.37885 * 120.00047 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99913 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99854 * 359.72512 * 18 16 15 21 21 H 1.48498 * 109.46909 * 90.00086 * 20 18 16 22 22 H 1.48497 * 109.46701 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46867 * 330.00101 * 20 18 16 24 24 H 1.08993 * 109.47357 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47671 * 300.00560 * 1 2 3 26 26 H 1.09002 * 109.47375 * 59.99933 * 1 2 3 27 27 H 1.08994 * 109.48124 * 177.71966 * 5 3 2 28 28 H 1.08997 * 109.49060 * 57.68945 * 5 3 2 29 29 H 1.09006 * 109.48168 * 301.17032 * 7 6 5 30 30 H 1.09006 * 109.48549 * 181.14885 * 7 6 5 31 31 H 1.08999 * 109.52380 * 182.48420 * 8 7 6 32 32 H 1.08997 * 109.57238 * 62.32932 * 8 7 6 33 33 H 1.00899 * 110.99746 * 321.04935 * 11 9 8 34 34 H 1.08999 * 109.47230 * 179.97438 * 14 12 11 35 35 H 1.09008 * 109.47061 * 299.99752 * 14 12 11 36 36 H 1.08998 * 109.47078 * 59.99301 * 14 12 11 37 37 H 1.09004 * 109.47330 * 304.99931 * 15 12 11 38 38 H 1.08997 * 109.47279 * 185.00418 * 15 12 11 39 39 H 0.97001 * 119.99646 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5110 5 6 2.2256 1.7696 -1.4429 6 8 3.1434 0.8882 -2.0934 7 6 4.4380 0.8451 -1.4900 8 6 4.3116 0.3439 -0.0490 9 6 3.3606 1.2646 0.7219 10 1 3.7821 2.2688 0.7670 11 7 3.1740 0.7483 2.0845 12 6 4.2451 1.2143 2.9753 13 1 5.1804 1.2733 2.4188 14 6 3.8883 2.5983 3.5213 15 6 4.4044 0.2329 4.1381 16 6 4.8750 -1.0982 3.6111 17 1 5.0432 -1.2310 2.5526 18 6 5.0899 -2.1469 4.4802 19 7 5.5011 -3.3084 4.0204 20 14 4.8050 -1.9153 6.3118 21 1 3.3976 -2.2564 6.6408 22 1 5.7204 -2.8043 7.0714 23 1 5.0705 -0.5011 6.6791 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 2.6313 2.7812 -1.4426 28 1 1.2738 1.7598 -1.9740 29 1 4.8727 1.8447 -1.4904 30 1 5.0802 0.1693 -2.0550 31 1 5.2921 0.3522 0.4269 32 1 3.9153 -0.6715 -0.0491 33 1 3.1161 -0.2590 2.0847 34 1 4.6828 2.9439 4.1826 35 1 3.7748 3.2976 2.6928 36 1 2.9528 2.5394 4.0776 37 1 3.4455 0.1062 4.6407 38 1 5.1364 0.6231 4.8452 39 1 5.6519 -4.0462 4.6318 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695775940.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:48 Heat of formation + Delta-G solvation = -122.885159 kcal Electronic energy + Delta-G solvation = -18915.747577 eV Core-core repulsion = 16050.167478 eV Total energy + Delta-G solvation = -2865.580099 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.89238 -38.08027 -37.84178 -34.99098 -33.68609 -31.45984 -30.22121 -29.44891 -27.38797 -25.24416 -24.31127 -24.06944 -21.12878 -20.97797 -18.93071 -17.71573 -17.49086 -16.82230 -16.73337 -16.31294 -15.98890 -15.78482 -15.43036 -14.78949 -14.61504 -14.37037 -13.83414 -13.57507 -13.51635 -13.33752 -13.22313 -12.71426 -12.56451 -12.30338 -12.22880 -12.15442 -11.83260 -11.65682 -11.50972 -11.27743 -11.21651 -10.99659 -10.75483 -10.01560 -9.14009 -8.27316 -6.30123 1.36066 1.36632 1.48445 2.36629 2.80177 3.04837 3.13761 3.35820 3.83664 3.85187 3.98743 4.18385 4.27939 4.34186 4.43628 4.52315 4.53780 4.55348 4.56994 4.65746 4.73825 4.76573 4.92118 4.95361 5.00705 5.04660 5.14006 5.22171 5.26450 5.39641 5.51476 5.69361 6.15918 6.25457 6.40064 6.52519 6.57699 6.76677 7.33914 8.88872 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.026113 B = 0.006588 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.022999 B = 4249.356337 C = 4325.150628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.397 6.397 3 C 0.068 3.932 4 H 0.086 0.914 5 C 0.039 3.961 6 O -0.394 6.394 7 C 0.071 3.929 8 C -0.174 4.174 9 C 0.090 3.910 10 H 0.099 0.901 11 N -0.673 5.673 12 C 0.096 3.904 13 H 0.023 0.977 14 C -0.129 4.129 15 C -0.013 4.013 16 C -0.521 4.521 17 H 0.034 0.966 18 C 0.006 3.994 19 N -0.950 5.950 20 Si 0.949 3.051 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.247 1.247 24 H 0.082 0.918 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.343 0.657 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.023 0.977 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 14.204 -8.093 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.316 6.316 3 C 0.010 3.990 4 H 0.104 0.896 5 C -0.038 4.038 6 O -0.312 6.312 7 C -0.006 4.006 8 C -0.214 4.214 9 C -0.021 4.021 10 H 0.117 0.883 11 N -0.304 5.304 12 C -0.014 4.014 13 H 0.041 0.959 14 C -0.186 4.186 15 C -0.050 4.050 16 C -0.559 4.559 17 H 0.052 0.948 18 C -0.191 4.191 19 N -0.591 5.591 20 Si 0.773 3.227 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.171 1.171 24 H 0.100 0.900 25 H 0.064 0.936 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.163 0.837 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.042 0.958 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.012 14.267 -7.993 18.211 hybrid contribution 0.815 -1.099 0.753 1.562 sum -7.197 13.169 -7.240 16.662 Atomic orbital electron populations 1.22864 0.80336 1.02994 1.00459 1.87980 1.20723 1.27904 1.94992 1.22914 0.94752 0.85720 0.95648 0.89630 1.23283 0.94581 0.93494 0.92422 1.87900 1.22878 1.66509 1.53949 1.22547 0.84741 1.01476 0.91864 1.22733 1.00199 1.00378 0.98042 1.21794 0.93569 0.98454 0.88250 0.88311 1.60719 1.45682 1.16858 1.07117 1.21377 0.91481 0.95165 0.93378 0.95865 1.21753 1.01448 0.94701 1.00737 1.19707 0.96254 0.93589 0.95476 1.21372 1.44171 0.96082 0.94269 0.94768 1.25955 0.94457 0.94665 1.04024 1.70078 1.48517 1.03430 1.37036 0.85681 0.78266 0.79235 0.79529 1.19641 1.21309 1.17054 0.89993 0.93645 0.92635 0.89960 0.87361 0.91022 0.88737 0.92576 0.93716 0.83713 0.92242 0.91848 0.92576 0.96266 0.95841 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 10.82 113.37 1.23 1.94 16 2 O -0.40 -12.83 9.54 -141.83 -1.35 -14.18 16 3 C 0.07 1.83 2.64 30.69 0.08 1.91 16 4 H 0.09 2.01 7.79 -2.39 -0.02 2.00 16 5 C 0.04 0.87 6.49 72.01 0.47 1.34 16 6 O -0.39 -11.22 10.70 -141.83 -1.52 -12.74 16 7 C 0.07 1.92 6.84 72.01 0.49 2.41 16 8 C -0.17 -5.94 5.22 30.68 0.16 -5.78 16 9 C 0.09 2.79 2.15 45.03 0.10 2.89 16 10 H 0.10 2.66 7.12 -2.39 -0.02 2.64 16 11 N -0.67 -25.44 5.88 -468.86 -2.76 -28.20 16 12 C 0.10 3.70 2.41 44.91 0.11 3.80 16 13 H 0.02 0.95 7.15 -2.39 -0.02 0.93 16 14 C -0.13 -3.86 9.40 71.98 0.68 -3.18 16 15 C -0.01 -0.59 3.64 29.85 0.11 -0.48 16 16 C -0.52 -29.72 8.67 25.60 0.22 -29.50 16 17 H 0.03 2.15 7.73 -2.91 -0.02 2.13 16 18 C 0.01 0.34 5.47 84.66 0.46 0.80 16 19 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 20 Si 0.95 45.03 27.47 68.60 1.88 46.91 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 24 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.04 1.02 8.09 -2.39 -0.02 1.00 16 26 H 0.06 1.04 7.86 -2.39 -0.02 1.02 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.11 2.02 7.86 -2.39 -0.02 2.00 16 29 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.06 2.07 7.48 -2.39 -0.02 2.06 16 32 H 0.04 1.85 7.77 -2.39 -0.02 1.84 16 33 H 0.34 15.78 6.88 -89.69 -0.62 15.16 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 1.60 7.43 -2.38 -0.02 1.58 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.02 0.90 7.58 -2.38 -0.02 0.88 16 38 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -67.92 307.15 1.00 -66.92 By element: Atomic # 1 Polarization: 24.64 SS G_CDS: 0.34 Total: 24.98 kcal Atomic # 6 Polarization: -27.94 SS G_CDS: 4.10 Total: -23.84 kcal Atomic # 7 Polarization: -85.59 SS G_CDS: -2.46 Total: -88.05 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -2.87 Total: -26.92 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -67.92 1.00 -66.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695775940.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.964 kcal (2) G-P(sol) polarization free energy of solvation -67.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds