Wall clock time and date at job start Mon Mar 30 2020 03:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47195 * 2 1 4 4 C 1.53001 * 109.47133 * 240.00692 * 2 1 3 5 5 C 1.50698 * 109.47381 * 175.00330 * 4 2 1 6 6 H 1.08000 * 119.99655 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00303 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00008 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00043 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47052 * 59.99561 * 9 7 5 11 11 H 1.48496 * 109.47220 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47049 * 299.99930 * 9 7 5 13 13 N 1.46891 * 109.47098 * 120.00553 * 2 1 3 14 14 C 1.46904 * 111.00023 * 274.99909 * 13 2 1 15 15 C 1.52998 * 109.47303 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47163 * 180.02562 * 15 14 13 17 17 O 1.42905 * 110.45451 * 302.60382 * 16 15 14 18 18 C 1.54505 * 110.51031 * 180.02562 * 16 15 14 19 19 C 1.54487 * 104.06179 * 241.21726 * 18 16 15 20 20 O 1.44421 * 104.79872 * 336.02098 * 19 18 16 21 21 C 1.44425 * 105.27967 * 40.51065 * 20 19 18 22 22 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47580 * 299.99820 * 1 2 3 24 24 H 1.09005 * 109.46821 * 59.99951 * 1 2 3 25 25 H 1.09005 * 109.46777 * 295.00041 * 4 2 1 26 26 H 1.08998 * 109.47240 * 54.99745 * 4 2 1 27 27 H 0.96991 * 119.99906 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00385 * 151.04852 * 13 2 1 29 29 H 1.09005 * 109.46666 * 59.99983 * 14 13 2 30 30 H 1.08998 * 109.46757 * 300.00296 * 14 13 2 31 31 H 1.09003 * 109.46849 * 59.99992 * 15 14 13 32 32 H 1.08999 * 109.47339 * 300.00704 * 15 14 13 33 33 H 0.96707 * 113.99650 * 178.08952 * 17 16 15 34 34 H 1.09003 * 110.51737 * 122.57645 * 18 16 15 35 35 H 1.08999 * 110.63305 * 359.91776 * 18 16 15 36 36 H 1.08997 * 110.37332 * 94.85398 * 19 18 16 37 37 H 1.09004 * 110.37288 * 217.19057 * 19 18 16 38 38 H 1.08999 * 110.37470 * 200.65665 * 21 20 19 39 39 H 1.09007 * 110.46197 * 78.36416 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1925 -2.3585 8 7 3.5764 -1.8366 -3.3003 9 14 6.0920 -1.0601 -2.4375 10 1 6.6845 -1.6864 -1.2283 11 1 6.5870 -1.7601 -3.6499 12 1 6.4844 0.3709 -2.4965 13 7 2.0196 -0.6926 1.1993 14 6 2.0825 0.2224 2.3469 15 6 2.5950 -0.5334 3.5744 16 6 2.6598 0.4194 4.7697 17 8 3.4949 1.5398 4.4706 18 6 3.1759 -0.3202 6.0242 19 6 2.0102 -0.2086 7.0318 20 8 1.2683 0.9566 6.6101 21 6 1.2435 0.8904 5.1676 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.7516 -1.7714 -1.2058 26 1 1.6054 -0.2615 -2.1370 27 1 4.0607 -2.2432 -4.0357 28 1 2.9173 -1.1206 1.0286 29 1 1.0870 0.6161 2.5525 30 1 2.7588 1.0460 2.1182 31 1 3.5903 -0.9275 3.3690 32 1 1.9184 -1.3569 3.8028 33 1 3.5489 2.1915 5.1830 34 1 4.0676 0.1689 6.4163 35 1 3.3841 -1.3654 5.7954 36 1 1.3807 -1.0971 6.9838 37 1 2.3941 -0.0688 8.0424 38 1 1.0385 1.8745 4.7461 39 1 0.4962 0.1714 4.8319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695834311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:35 Heat of formation + Delta-G solvation = -114.943728 kcal Electronic energy + Delta-G solvation = -18109.986281 eV Core-core repulsion = 15244.750548 eV Total energy + Delta-G solvation = -2865.235733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19428 -36.89969 -36.05908 -33.32430 -32.22638 -30.92268 -29.15412 -27.36451 -26.53438 -23.65489 -22.96245 -21.63213 -20.43468 -19.29323 -17.53395 -16.40029 -16.31668 -15.90775 -15.04991 -14.75000 -14.71313 -14.39874 -14.08960 -13.66014 -13.28486 -12.85551 -12.53249 -11.92506 -11.85498 -11.75136 -11.44955 -11.40186 -11.36227 -11.14848 -10.91902 -10.75661 -10.53916 -10.45999 -10.28162 -10.10960 -9.70191 -9.18654 -9.04852 -8.37408 -7.60343 -6.00754 -4.03741 3.32628 3.37275 3.39882 3.69451 4.07136 4.31045 4.45115 4.53594 4.58623 4.80774 4.97757 5.16290 5.35025 5.38275 5.43886 5.46744 5.55580 5.64550 5.71336 5.81554 5.94537 6.04027 6.23156 6.28463 6.37093 6.41992 6.52298 6.59189 6.95576 6.98380 7.52348 7.55643 7.66191 7.98972 8.09483 8.31118 8.40472 9.02372 9.60364 11.10160 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.029059 B = 0.005033 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.332768 B = 5562.073953 C = 6206.127964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.029 0.971 4 C 0.021 3.979 5 C -0.524 4.524 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 N -0.686 5.686 14 C 0.062 3.938 15 C -0.098 4.098 16 C 0.107 3.893 17 O -0.546 6.546 18 C -0.185 4.185 19 C 0.042 3.958 20 O -0.379 6.379 21 C 0.016 3.984 22 H 0.054 0.946 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.025 0.975 26 H 0.021 0.979 27 H 0.261 0.739 28 H 0.353 0.647 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.375 0.625 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.100 0.900 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 3.497 18.380 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.531 5.531 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.320 5.320 14 C -0.068 4.068 15 C -0.136 4.136 16 C 0.065 3.935 17 O -0.351 6.351 18 C -0.223 4.223 19 C -0.034 4.034 20 O -0.298 6.298 21 C -0.061 4.061 22 H 0.073 0.927 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.039 0.961 27 H 0.071 0.929 28 H 0.174 0.826 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.223 0.777 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.637 2.982 17.934 18.541 hybrid contribution 1.874 0.696 0.073 2.001 sum -1.763 3.678 18.008 18.464 Atomic orbital electron populations 1.21792 0.96822 1.01232 0.99412 1.21597 0.93257 0.95929 0.91451 0.95331 1.19277 0.95393 0.96156 0.90846 1.21151 0.92258 1.34487 1.08319 0.93055 1.24982 0.98218 0.95190 0.95679 1.69950 1.35584 1.35612 1.11936 0.86696 0.85928 0.78188 0.77413 1.20227 1.21277 1.20346 1.60592 1.34646 1.32203 1.04536 1.21843 0.99491 0.94613 0.90852 1.21564 1.02757 0.96592 0.92707 1.22582 0.89135 0.87031 0.94726 1.86633 1.69278 1.33802 1.45410 1.23705 0.99477 1.03035 0.96074 1.23438 0.92082 0.89207 0.98704 1.89136 1.75709 1.44474 1.20434 1.24290 0.97264 1.03349 0.81209 0.92691 0.94600 0.93358 0.95624 0.96103 0.92915 0.82589 0.92262 0.94798 0.90870 0.89818 0.77748 0.89838 0.89308 0.91945 0.89053 0.88150 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.41 37.16 0.35 -2.12 16 2 C 0.09 1.85 2.59 -67.72 -0.18 1.68 16 3 H 0.03 0.63 7.80 -51.93 -0.40 0.23 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.60 8.12 -34.44 -0.28 -14.88 16 6 H 0.05 1.40 7.49 -52.49 -0.39 1.01 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 9 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.69 -13.34 6.31 -106.73 -0.67 -14.02 16 14 C 0.06 1.00 5.16 -3.82 -0.02 0.98 16 15 C -0.10 -1.32 4.48 -26.73 -0.12 -1.44 16 16 C 0.11 1.22 1.11 -89.06 -0.10 1.12 16 17 O -0.55 -6.73 12.31 -35.23 -0.43 -7.16 16 18 C -0.18 -1.71 6.52 -25.16 -0.16 -1.87 16 19 C 0.04 0.37 7.63 37.94 0.29 0.66 16 20 O -0.38 -4.29 11.65 -35.23 -0.41 -4.70 16 21 C 0.02 0.17 5.97 37.93 0.23 0.40 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.03 0.58 7.45 -51.93 -0.39 0.19 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.35 7.50 7.21 -39.29 -0.28 7.22 16 29 H 0.06 0.91 6.74 -51.93 -0.35 0.56 16 30 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 33 H 0.38 3.27 9.04 45.56 0.41 3.68 16 34 H 0.08 0.72 8.00 -51.93 -0.42 0.31 16 35 H 0.09 0.77 7.74 -51.93 -0.40 0.37 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.10 1.07 8.09 -51.93 -0.42 0.65 16 39 H 0.07 0.80 7.83 -51.92 -0.41 0.39 16 LS Contribution 313.80 15.07 4.73 4.73 Total: -1.00 -30.77 313.80 -7.25 -38.02 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.96 Total: 5.87 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: -0.22 Total: -13.41 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.06 Total: -39.97 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.84 Total: -11.87 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.77 -7.25 -38.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.925 kcal (2) G-P(sol) polarization free energy of solvation -30.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds