Wall clock time and date at job start Mon Mar 30 2020 03:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47195 * 2 1 4 4 C 1.53001 * 109.47133 * 240.00692 * 2 1 3 5 5 C 1.50698 * 109.47381 * 175.00330 * 4 2 1 6 6 H 1.08000 * 119.99655 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00303 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00008 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00043 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47052 * 59.99561 * 9 7 5 11 11 H 1.48496 * 109.47220 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47049 * 299.99930 * 9 7 5 13 13 N 1.46891 * 109.47098 * 120.00553 * 2 1 3 14 14 C 1.46904 * 111.00023 * 274.99909 * 13 2 1 15 15 C 1.52998 * 109.47303 * 179.97438 * 14 13 2 16 16 C 1.52999 * 109.47163 * 180.02562 * 15 14 13 17 17 O 1.42905 * 110.45451 * 302.60382 * 16 15 14 18 18 C 1.54505 * 110.51031 * 180.02562 * 16 15 14 19 19 C 1.54487 * 104.06179 * 241.21726 * 18 16 15 20 20 O 1.44421 * 104.79872 * 336.02098 * 19 18 16 21 21 C 1.44425 * 105.27967 * 40.51065 * 20 19 18 22 22 H 1.09000 * 109.46984 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47580 * 299.99820 * 1 2 3 24 24 H 1.09005 * 109.46821 * 59.99951 * 1 2 3 25 25 H 1.09005 * 109.46777 * 295.00041 * 4 2 1 26 26 H 1.08998 * 109.47240 * 54.99745 * 4 2 1 27 27 H 0.96991 * 119.99906 * 180.02562 * 8 7 5 28 28 H 1.00901 * 111.00385 * 151.04852 * 13 2 1 29 29 H 1.09005 * 109.46666 * 59.99983 * 14 13 2 30 30 H 1.08998 * 109.46757 * 300.00296 * 14 13 2 31 31 H 1.09003 * 109.46849 * 59.99992 * 15 14 13 32 32 H 1.08999 * 109.47339 * 300.00704 * 15 14 13 33 33 H 0.96707 * 113.99650 * 178.08952 * 17 16 15 34 34 H 1.09003 * 110.51737 * 122.57645 * 18 16 15 35 35 H 1.08999 * 110.63305 * 359.91776 * 18 16 15 36 36 H 1.08997 * 110.37332 * 94.85398 * 19 18 16 37 37 H 1.09004 * 110.37288 * 217.19057 * 19 18 16 38 38 H 1.08999 * 110.37470 * 200.65665 * 21 20 19 39 39 H 1.09007 * 110.46197 * 78.36416 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1925 -2.3585 8 7 3.5764 -1.8366 -3.3003 9 14 6.0920 -1.0601 -2.4375 10 1 6.6845 -1.6864 -1.2283 11 1 6.5870 -1.7601 -3.6499 12 1 6.4844 0.3709 -2.4965 13 7 2.0196 -0.6926 1.1993 14 6 2.0825 0.2224 2.3469 15 6 2.5950 -0.5334 3.5744 16 6 2.6598 0.4194 4.7697 17 8 3.4949 1.5398 4.4706 18 6 3.1759 -0.3202 6.0242 19 6 2.0102 -0.2086 7.0318 20 8 1.2683 0.9566 6.6101 21 6 1.2435 0.8904 5.1676 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 1.7516 -1.7714 -1.2058 26 1 1.6054 -0.2615 -2.1370 27 1 4.0607 -2.2432 -4.0357 28 1 2.9173 -1.1206 1.0286 29 1 1.0870 0.6161 2.5525 30 1 2.7588 1.0460 2.1182 31 1 3.5903 -0.9275 3.3690 32 1 1.9184 -1.3569 3.8028 33 1 3.5489 2.1915 5.1830 34 1 4.0676 0.1689 6.4163 35 1 3.3841 -1.3654 5.7954 36 1 1.3807 -1.0971 6.9838 37 1 2.3941 -0.0688 8.0424 38 1 1.0385 1.8745 4.7461 39 1 0.4962 0.1714 4.8319 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695834311.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:34 Heat of formation + Delta-G solvation = -138.689167 kcal Electronic energy + Delta-G solvation = -18111.015961 eV Core-core repulsion = 15244.750548 eV Total energy + Delta-G solvation = -2866.265412 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.03686 -38.39204 -37.09028 -35.07055 -33.79916 -31.98630 -30.27433 -29.29792 -27.65332 -25.22648 -24.27559 -22.74813 -21.51363 -20.92130 -18.52622 -18.38978 -17.24490 -16.96564 -16.61815 -16.17050 -15.97038 -15.56861 -15.21641 -15.00601 -14.52567 -14.17362 -13.67675 -13.60071 -13.36939 -13.20962 -12.94801 -12.71029 -12.57739 -12.45796 -12.35548 -12.32810 -12.12663 -11.78861 -11.68116 -11.28041 -11.12713 -10.97795 -10.57727 -10.53043 -9.20338 -8.20021 -6.30735 1.38977 1.40886 1.48964 2.39749 2.91191 3.11038 3.25120 3.35547 3.54005 3.73125 4.02630 4.09152 4.21819 4.25532 4.35724 4.42449 4.63654 4.64288 4.70416 4.74210 4.79487 4.81003 4.92717 5.00222 5.03848 5.15253 5.21136 5.23427 5.33133 5.49107 5.55255 5.74637 5.83451 6.20523 6.40285 6.62376 6.79250 6.83972 7.38000 8.91394 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.029059 B = 0.005033 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.332768 B = 5562.073953 C = 6206.127964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.094 3.906 3 H 0.019 0.981 4 C 0.028 3.972 5 C -0.537 4.537 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.959 3.041 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.272 1.272 13 N -0.684 5.684 14 C 0.067 3.933 15 C -0.093 4.093 16 C 0.107 3.893 17 O -0.566 6.566 18 C -0.179 4.179 19 C 0.041 3.959 20 O -0.394 6.394 21 C 0.019 3.981 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.000 1.000 26 H -0.005 1.005 27 H 0.264 0.736 28 H 0.341 0.659 29 H 0.073 0.927 30 H 0.014 0.986 31 H 0.061 0.939 32 H 0.095 0.905 33 H 0.390 0.610 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.550 3.748 20.208 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.016 4.016 3 H 0.037 0.963 4 C -0.010 4.010 5 C -0.575 4.575 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.784 3.216 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.197 1.197 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.131 4.131 16 C 0.065 3.935 17 O -0.374 6.374 18 C -0.217 4.217 19 C -0.036 4.036 20 O -0.313 6.313 21 C -0.058 4.058 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.071 0.929 25 H 0.018 0.982 26 H 0.013 0.987 27 H 0.072 0.928 28 H 0.160 0.840 29 H 0.091 0.909 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.239 0.761 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.090 0.910 37 H 0.128 0.872 38 H 0.117 0.883 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.176 3.248 19.793 20.307 hybrid contribution 1.702 0.629 -0.484 1.878 sum -1.474 3.878 19.309 19.750 Atomic orbital electron populations 1.21703 0.94262 1.01564 1.00935 1.21434 0.95288 0.94589 0.90313 0.96333 1.19137 0.94782 0.94823 0.92234 1.21472 0.93345 1.34279 1.08375 0.92856 1.25868 1.03327 0.94737 0.95254 1.70079 1.37624 1.36564 1.12634 0.85590 0.79794 0.78401 0.77790 1.19110 1.20777 1.19718 1.60659 1.33741 1.32670 1.04597 1.21877 0.99931 0.93777 0.90669 1.21512 1.02177 0.97135 0.92250 1.22528 0.89680 0.86734 0.94522 1.86588 1.69530 1.34556 1.46746 1.23661 0.99918 1.03129 0.95014 1.23610 0.91754 0.88803 0.99387 1.89124 1.76158 1.45641 1.20374 1.24233 0.96881 1.03371 0.81331 0.92930 0.91979 0.92948 0.98192 0.98706 0.92752 0.84011 0.90912 0.96781 0.91974 0.88614 0.76070 0.89160 0.88693 0.91047 0.87215 0.88268 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.41 71.98 0.68 -3.84 16 2 C 0.09 4.00 2.59 44.92 0.12 4.11 16 3 H 0.02 0.83 7.80 -2.39 -0.02 0.81 16 4 C 0.03 1.47 4.57 29.85 0.14 1.61 16 5 C -0.54 -30.35 8.12 25.60 0.21 -30.14 16 6 H 0.05 2.93 7.49 -2.91 -0.02 2.91 16 7 C 0.01 0.37 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 9 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 10 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 N -0.68 -26.44 6.31 -491.58 -3.10 -29.54 16 14 C 0.07 2.10 5.16 86.30 0.44 2.55 16 15 C -0.09 -2.36 4.48 30.59 0.14 -2.22 16 16 C 0.11 2.24 1.11 -9.78 -0.01 2.23 16 17 O -0.57 -13.19 12.31 -148.98 -1.83 -15.03 16 18 C -0.18 -2.88 6.52 31.61 0.21 -2.68 16 19 C 0.04 0.60 7.63 72.49 0.55 1.16 16 20 O -0.39 -8.04 11.65 -148.98 -1.74 -9.78 16 21 C 0.02 0.37 5.97 72.48 0.43 0.81 16 22 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 24 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 26 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 27 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 28 H 0.34 14.59 7.21 -89.69 -0.65 13.94 16 29 H 0.07 2.09 6.74 -2.38 -0.02 2.08 16 30 H 0.01 0.50 7.58 -2.39 -0.02 0.48 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 2.19 8.09 -2.39 -0.02 2.17 16 33 H 0.39 6.21 9.04 -74.05 -0.67 5.54 16 34 H 0.09 1.34 8.00 -2.39 -0.02 1.32 16 35 H 0.09 1.42 7.74 -2.39 -0.02 1.40 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.10 1.96 8.09 -2.39 -0.02 1.94 16 39 H 0.08 1.48 7.83 -2.38 -0.02 1.46 16 Total: -1.00 -65.80 313.80 -1.28 -67.08 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.29 Total: 22.59 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 3.36 Total: -25.59 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -2.82 Total: -85.78 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -3.57 Total: -24.81 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -65.80 -1.28 -67.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695834311.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.604 kcal (2) G-P(sol) polarization free energy of solvation -65.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds