Wall clock time and date at job start Mon Mar 30 2020 04:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99709 * 2 1 4 4 C 1.53003 * 109.46720 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.66961 * 51.76715 * 4 3 2 6 6 C 1.54890 * 110.75393 * 288.32899 * 4 3 2 7 7 C 1.54275 * 104.19161 * 203.74350 * 6 4 3 8 8 H 1.08996 * 110.02821 * 142.89505 * 7 6 4 9 9 O 1.42896 * 110.07354 * 264.30661 * 7 6 4 10 10 C 1.53877 * 106.59726 * 23.61192 * 7 6 4 11 11 H 1.08999 * 110.07179 * 240.69358 * 10 7 6 12 12 N 1.46905 * 110.02947 * 119.28358 * 10 7 6 13 13 C 1.46895 * 111.00025 * 62.06183 * 12 10 7 14 14 C 1.46900 * 110.99754 * 186.01580 * 12 10 7 15 15 C 1.50704 * 109.46790 * 170.00066 * 14 12 10 16 16 H 1.07990 * 119.99916 * 359.97438 * 15 14 12 17 17 C 1.37879 * 119.99588 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99865 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00236 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47311 * 89.99932 * 19 17 15 21 21 H 1.48504 * 109.46959 * 210.00129 * 19 17 15 22 22 H 1.48507 * 109.47151 * 329.99953 * 19 17 15 23 23 C 1.54264 * 106.60078 * 0.02562 * 10 7 6 24 24 H 1.09001 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47276 * 299.99623 * 1 2 3 26 26 H 1.09008 * 109.47210 * 59.99864 * 1 2 3 27 27 H 1.09004 * 109.46631 * 59.99982 * 3 2 1 28 28 H 1.08997 * 109.47145 * 300.00366 * 3 2 1 29 29 H 1.08996 * 110.48900 * 322.41784 * 6 4 3 30 30 H 1.09001 * 110.48442 * 85.07317 * 6 4 3 31 31 H 0.96699 * 113.99816 * 297.19179 * 9 7 6 32 32 H 1.09007 * 109.47117 * 54.56896 * 13 12 10 33 33 H 1.09002 * 109.47333 * 174.56664 * 13 12 10 34 34 H 1.09000 * 109.47671 * 294.57722 * 13 12 10 35 35 H 1.08993 * 109.47160 * 289.99981 * 14 12 10 36 36 H 1.09002 * 109.46737 * 50.00183 * 14 12 10 37 37 H 0.97000 * 120.00396 * 179.97438 * 18 17 15 38 38 H 1.09000 * 110.48885 * 217.71161 * 23 10 7 39 39 H 1.08995 * 110.48923 * 95.06748 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8694 0.5250 -0.8001 6 6 4.0460 0.6875 1.3759 7 6 5.5043 1.1870 1.4410 8 1 5.7478 1.4965 2.4573 9 8 6.3959 0.1538 1.0172 10 6 5.5999 2.3900 0.4863 11 1 6.3259 2.1863 -0.3007 12 7 5.9908 3.5940 1.2318 13 6 7.3180 3.4292 1.8394 14 6 5.9503 4.7830 0.3700 15 6 6.1145 6.0208 1.2139 16 1 6.2363 5.9329 2.2833 17 6 6.1081 7.2654 0.6206 18 7 6.2509 8.3456 1.3570 19 14 5.8953 7.4174 -1.2290 20 1 4.4505 7.5295 -1.5535 21 1 6.6065 8.6286 -1.7112 22 1 6.4598 6.2148 -1.8927 23 6 4.1964 2.5802 -0.1250 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.4569 1.1243 2.1822 30 1 4.0131 -0.4009 1.4242 31 1 6.3819 -0.6328 1.5794 32 1 8.0383 3.1523 1.0695 33 1 7.6243 4.3669 2.3031 34 1 7.2764 2.6461 2.5965 35 1 6.7585 4.7307 -0.3594 36 1 4.9932 4.8222 -0.1502 37 1 6.2468 9.2212 0.9396 38 1 4.2729 2.8726 -1.1723 39 1 3.6319 3.3226 0.4390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000698767299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:21 Heat of formation + Delta-G solvation = -95.462530 kcal Electronic energy + Delta-G solvation = -18434.058302 eV Core-core repulsion = 15569.667337 eV Total energy + Delta-G solvation = -2864.390965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.40790 -37.70935 -35.86707 -34.49061 -32.39672 -29.37623 -28.23863 -27.71624 -26.41264 -24.26427 -23.81067 -20.99495 -20.10500 -19.11725 -16.96948 -16.82636 -16.52676 -16.02741 -15.51477 -15.08683 -14.49972 -14.38108 -14.01281 -13.48722 -13.27537 -12.80116 -12.35240 -12.14174 -12.09103 -11.83452 -11.63184 -11.49555 -11.07813 -10.86020 -10.67632 -10.61292 -10.52365 -10.44217 -10.09605 -9.84022 -9.78406 -9.53008 -9.25510 -8.56779 -7.37972 -6.05554 -4.02553 3.27404 3.35354 3.38049 3.67404 4.27644 4.41701 4.71116 4.71973 4.97218 5.12824 5.16094 5.21445 5.27597 5.40056 5.44937 5.48996 5.57755 5.68268 5.76101 5.83951 5.94518 6.06774 6.09799 6.15106 6.21791 6.34443 6.39529 6.59621 6.74622 6.89770 7.00006 7.09408 7.59222 7.81721 7.91131 8.07249 8.65870 9.03075 9.56374 11.07561 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.006394 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.222229 B = 4377.959731 C = 5203.158814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.068 3.932 4 C -0.086 4.086 5 H 0.083 0.917 6 C -0.138 4.138 7 C 0.102 3.898 8 H 0.070 0.930 9 O -0.568 6.568 10 C 0.087 3.913 11 H 0.046 0.954 12 N -0.525 5.525 13 C 0.034 3.966 14 C 0.160 3.840 15 C -0.508 4.508 16 H 0.081 0.919 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.872 3.128 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.267 1.267 23 C -0.109 4.109 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.372 0.628 32 H 0.012 0.988 33 H 0.082 0.918 34 H 0.048 0.952 35 H -0.012 1.012 36 H 0.028 0.972 37 H 0.263 0.737 38 H 0.066 0.934 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 -16.285 -1.924 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.008 4.008 4 C -0.105 4.105 5 H 0.101 0.899 6 C -0.176 4.176 7 C 0.043 3.957 8 H 0.088 0.912 9 O -0.373 6.373 10 C -0.023 4.023 11 H 0.064 0.936 12 N -0.249 5.249 13 C -0.114 4.114 14 C 0.034 3.966 15 C -0.547 4.547 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.540 5.540 19 Si 0.699 3.301 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.192 1.192 23 C -0.146 4.146 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.218 0.782 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.005 0.995 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.577 -15.726 -2.029 17.574 hybrid contribution 0.080 0.014 -1.220 1.222 sum -7.496 -15.712 -3.248 17.709 Atomic orbital electron populations 1.22711 0.81465 1.02392 0.99955 1.87867 1.19310 1.28527 1.95433 1.22620 0.93623 0.84158 1.00411 1.22041 0.92196 0.97804 0.98471 0.89891 1.23006 0.96600 1.00683 0.97306 1.22524 0.87817 0.87211 0.98151 0.91233 1.86529 1.64725 1.28862 1.57211 1.22096 0.96279 0.89847 0.94039 0.93625 1.62098 1.27286 1.01663 1.33889 1.22275 0.89080 1.02058 0.97972 1.20213 0.95553 0.88560 0.92289 1.21039 1.49280 0.88282 0.96070 0.90095 1.24881 0.94923 0.95762 0.97689 1.69890 1.50780 0.97885 1.35418 0.86905 0.78650 0.77862 0.86645 1.20126 1.21178 1.19228 1.22436 0.95373 0.95931 1.00905 0.89923 0.94122 0.94250 0.92844 0.93253 0.90731 0.91239 0.78178 0.96913 0.89961 0.93310 0.99456 0.95408 0.92676 0.91550 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.39 -4.94 10.65 -35.23 -0.38 -5.31 16 3 C 0.07 0.85 5.37 37.16 0.20 1.05 16 4 C -0.09 -1.18 3.16 -88.61 -0.28 -1.46 16 5 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 6 C -0.14 -1.82 5.96 -25.07 -0.15 -1.97 16 7 C 0.10 1.53 3.47 -25.61 -0.09 1.44 16 8 H 0.07 1.07 6.52 -51.93 -0.34 0.73 16 9 O -0.57 -8.06 13.22 -35.23 -0.47 -8.53 16 10 C 0.09 1.56 2.47 -66.59 -0.16 1.39 16 11 H 0.05 0.89 7.96 -51.93 -0.41 0.48 16 12 N -0.52 -11.09 4.52 -234.98 -1.06 -12.15 16 13 C 0.03 0.69 9.09 60.06 0.55 1.23 16 14 C 0.16 3.89 3.58 -4.97 -0.02 3.87 16 15 C -0.51 -14.40 8.93 -34.44 -0.31 -14.70 16 16 H 0.08 2.49 7.42 -52.49 -0.39 2.10 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 18 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 19 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 23 C -0.11 -1.75 4.45 -25.06 -0.11 -1.86 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.33 8.14 -51.92 -0.42 -0.10 16 27 H 0.05 0.65 7.99 -51.93 -0.41 0.23 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.97 7.93 -51.93 -0.41 0.56 16 30 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.37 3.49 9.11 45.56 0.41 3.91 16 32 H 0.01 0.25 8.13 -51.92 -0.42 -0.18 16 33 H 0.08 1.79 6.66 -51.93 -0.35 1.45 16 34 H 0.05 0.85 6.62 -51.93 -0.34 0.50 16 35 H -0.01 -0.31 7.18 -51.93 -0.37 -0.68 16 36 H 0.03 0.66 5.86 -51.93 -0.30 0.36 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.09 1.51 7.51 -51.93 -0.39 1.12 16 LS Contribution 307.61 15.07 4.64 4.64 Total: -1.00 -31.73 307.61 -6.37 -38.11 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.85 Total: 0.88 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.64 Total: -7.71 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: -0.29 Total: -38.89 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.84 Total: -13.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.73 -6.37 -38.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698767299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.357 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds