Wall clock time and date at job start Mon Mar 30 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99709 * 2 1 4 4 C 1.53003 * 109.46720 * 179.97438 * 3 2 1 5 5 H 1.08994 * 110.66961 * 51.76715 * 4 3 2 6 6 C 1.54890 * 110.75393 * 288.32899 * 4 3 2 7 7 C 1.54275 * 104.19161 * 203.74350 * 6 4 3 8 8 H 1.08996 * 110.02821 * 142.89505 * 7 6 4 9 9 O 1.42896 * 110.07354 * 264.30661 * 7 6 4 10 10 C 1.53877 * 106.59726 * 23.61192 * 7 6 4 11 11 H 1.08999 * 110.07179 * 240.69358 * 10 7 6 12 12 N 1.46905 * 110.02947 * 119.28358 * 10 7 6 13 13 C 1.46895 * 111.00025 * 62.06183 * 12 10 7 14 14 C 1.46900 * 110.99754 * 186.01580 * 12 10 7 15 15 C 1.50704 * 109.46790 * 170.00066 * 14 12 10 16 16 H 1.07990 * 119.99916 * 359.97438 * 15 14 12 17 17 C 1.37879 * 119.99588 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99865 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00236 * 0.02562 * 17 15 14 20 20 H 1.48504 * 109.47311 * 89.99932 * 19 17 15 21 21 H 1.48504 * 109.46959 * 210.00129 * 19 17 15 22 22 H 1.48507 * 109.47151 * 329.99953 * 19 17 15 23 23 C 1.54264 * 106.60078 * 0.02562 * 10 7 6 24 24 H 1.09001 * 109.47348 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47276 * 299.99623 * 1 2 3 26 26 H 1.09008 * 109.47210 * 59.99864 * 1 2 3 27 27 H 1.09004 * 109.46631 * 59.99982 * 3 2 1 28 28 H 1.08997 * 109.47145 * 300.00366 * 3 2 1 29 29 H 1.08996 * 110.48900 * 322.41784 * 6 4 3 30 30 H 1.09001 * 110.48442 * 85.07317 * 6 4 3 31 31 H 0.96699 * 113.99816 * 297.19179 * 9 7 6 32 32 H 1.09007 * 109.47117 * 54.56896 * 13 12 10 33 33 H 1.09002 * 109.47333 * 174.56664 * 13 12 10 34 34 H 1.09000 * 109.47671 * 294.57722 * 13 12 10 35 35 H 1.08993 * 109.47160 * 289.99981 * 14 12 10 36 36 H 1.09002 * 109.46737 * 50.00183 * 14 12 10 37 37 H 0.97000 * 120.00396 * 179.97438 * 18 17 15 38 38 H 1.09000 * 110.48885 * 217.71161 * 23 10 7 39 39 H 1.08995 * 110.48923 * 95.06748 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8694 0.5250 -0.8001 6 6 4.0460 0.6875 1.3759 7 6 5.5043 1.1870 1.4410 8 1 5.7478 1.4965 2.4573 9 8 6.3959 0.1538 1.0172 10 6 5.5999 2.3900 0.4863 11 1 6.3259 2.1863 -0.3007 12 7 5.9908 3.5940 1.2318 13 6 7.3180 3.4292 1.8394 14 6 5.9503 4.7830 0.3700 15 6 6.1145 6.0208 1.2139 16 1 6.2363 5.9329 2.2833 17 6 6.1081 7.2654 0.6206 18 7 6.2509 8.3456 1.3570 19 14 5.8953 7.4174 -1.2290 20 1 4.4505 7.5295 -1.5535 21 1 6.6065 8.6286 -1.7112 22 1 6.4598 6.2148 -1.8927 23 6 4.1964 2.5802 -0.1250 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8465 -0.8899 29 1 3.4569 1.1243 2.1822 30 1 4.0131 -0.4009 1.4242 31 1 6.3819 -0.6328 1.5794 32 1 8.0383 3.1523 1.0695 33 1 7.6243 4.3669 2.3031 34 1 7.2764 2.6461 2.5965 35 1 6.7585 4.7307 -0.3594 36 1 4.9932 4.8222 -0.1502 37 1 6.2468 9.2212 0.9396 38 1 4.2729 2.8726 -1.1723 39 1 3.6319 3.3226 0.4390 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000698767299.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:20 Heat of formation + Delta-G solvation = -120.681509 kcal Electronic energy + Delta-G solvation = -18435.151879 eV Core-core repulsion = 15569.667337 eV Total energy + Delta-G solvation = -2865.484542 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65574 -38.69054 -37.32509 -35.70686 -34.51778 -30.79334 -29.71529 -29.16358 -27.31846 -25.93356 -25.00906 -22.74897 -21.24938 -20.55206 -18.98534 -18.13899 -17.48046 -16.97929 -16.76348 -16.42488 -16.13083 -15.68493 -15.52453 -14.93037 -14.67118 -14.37133 -13.98676 -13.60354 -13.27204 -13.11032 -12.93466 -12.90432 -12.44175 -12.36122 -12.21337 -12.07851 -11.90435 -11.79529 -11.71194 -11.40970 -11.32965 -10.79781 -10.76070 -10.52285 -9.09515 -8.28503 -6.31398 1.33287 1.35271 1.45657 2.33678 2.76086 2.99264 3.05459 3.46866 3.58481 3.82410 3.98810 4.24667 4.31277 4.41188 4.43332 4.49215 4.55392 4.56999 4.60751 4.65045 4.77451 4.77954 4.83453 4.87808 4.88495 5.02308 5.04348 5.07785 5.15209 5.24050 5.40969 5.53412 5.98544 6.24632 6.30510 6.63283 6.74502 6.95867 7.31956 8.87966 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022499 B = 0.006394 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.222229 B = 4377.959731 C = 5203.158814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.071 3.929 4 C -0.078 4.078 5 H 0.082 0.918 6 C -0.129 4.129 7 C 0.110 3.890 8 H 0.066 0.934 9 O -0.580 6.580 10 C 0.081 3.919 11 H 0.031 0.969 12 N -0.534 5.534 13 C 0.040 3.960 14 C 0.171 3.829 15 C -0.515 4.515 16 H 0.041 0.959 17 C 0.012 3.988 18 N -0.946 5.946 19 Si 0.941 3.059 20 H -0.260 1.260 21 H -0.281 1.281 22 H -0.256 1.256 23 C -0.108 4.108 24 H 0.099 0.901 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.394 0.606 32 H 0.013 0.987 33 H 0.053 0.947 34 H 0.076 0.924 35 H -0.021 1.021 36 H 0.038 0.962 37 H 0.267 0.733 38 H 0.067 0.933 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.671 -18.152 -3.186 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C -0.005 4.005 4 C -0.097 4.097 5 H 0.101 0.899 6 C -0.167 4.167 7 C 0.051 3.949 8 H 0.083 0.917 9 O -0.388 6.388 10 C -0.028 4.028 11 H 0.049 0.951 12 N -0.258 5.258 13 C -0.108 4.108 14 C 0.044 3.956 15 C -0.554 4.554 16 H 0.059 0.941 17 C -0.186 4.186 18 N -0.587 5.587 19 Si 0.764 3.236 20 H -0.185 1.185 21 H -0.207 1.207 22 H -0.180 1.180 23 C -0.146 4.146 24 H 0.117 0.883 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.244 0.756 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.094 0.906 35 H -0.003 1.003 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.756 -17.636 -3.275 19.960 hybrid contribution 0.466 0.534 -0.729 1.017 sum -8.290 -17.102 -4.004 19.423 Atomic orbital electron populations 1.22920 0.79751 1.03787 1.00686 1.87825 1.21192 1.28319 1.95574 1.22525 0.92671 0.84473 1.00832 1.21935 0.93126 0.95928 0.98731 0.89938 1.22953 0.94997 1.01733 0.97029 1.22306 0.89229 0.86590 0.96746 0.91654 1.86474 1.64549 1.29696 1.58105 1.22237 0.96788 0.89587 0.94205 0.95086 1.62035 1.27803 1.02155 1.33853 1.22210 0.88726 1.01459 0.98450 1.19964 0.95467 0.88418 0.91740 1.21245 1.48943 0.90362 0.94805 0.94092 1.25774 0.94512 0.95222 1.03088 1.70037 1.52206 0.98622 1.37843 0.85806 0.79446 0.78241 0.80058 1.18497 1.20706 1.17999 1.22398 0.94339 0.97326 1.00566 0.88285 0.93449 0.93461 0.92682 0.92660 0.90499 0.89443 0.75573 0.96822 0.92780 0.90565 1.00306 0.94448 0.92404 0.91390 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -9.24 10.65 -148.98 -1.59 -10.82 16 3 C 0.07 1.61 5.37 71.98 0.39 2.00 16 4 C -0.08 -1.97 3.16 -9.49 -0.03 -2.00 16 5 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 6 C -0.13 -3.07 5.96 31.67 0.19 -2.88 16 7 C 0.11 3.10 3.47 31.32 0.11 3.20 16 8 H 0.07 1.89 6.52 -2.39 -0.02 1.88 16 9 O -0.58 -15.00 13.22 -148.98 -1.97 -16.97 16 10 C 0.08 2.81 2.47 45.64 0.11 2.92 16 11 H 0.03 1.18 7.96 -2.39 -0.02 1.16 16 12 N -0.53 -22.54 4.52 -897.33 -4.05 -26.59 16 13 C 0.04 1.59 9.09 127.69 1.16 2.75 16 14 C 0.17 8.33 3.58 85.56 0.31 8.64 16 15 C -0.52 -29.93 8.93 25.60 0.23 -29.70 16 16 H 0.04 2.64 7.42 -2.92 -0.02 2.62 16 17 C 0.01 0.67 5.47 84.66 0.46 1.14 16 18 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 19 Si 0.94 44.15 27.47 68.60 1.88 46.04 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.26 -11.45 6.54 99.48 0.65 -10.80 16 23 C -0.11 -3.34 4.45 31.68 0.14 -3.20 16 24 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 27 H 0.05 1.22 7.99 -2.39 -0.02 1.20 16 28 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.81 7.93 -2.39 -0.02 1.79 16 30 H 0.09 1.79 8.07 -2.39 -0.02 1.77 16 31 H 0.39 6.19 9.11 -74.06 -0.67 5.52 16 32 H 0.01 0.53 8.13 -2.38 -0.02 0.51 16 33 H 0.05 2.45 6.66 -2.39 -0.02 2.43 16 34 H 0.08 2.60 6.62 -2.39 -0.02 2.58 16 35 H -0.02 -1.04 7.18 -2.39 -0.02 -1.06 16 36 H 0.04 1.75 5.86 -2.39 -0.01 1.74 16 37 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.52 7.51 -2.39 -0.02 2.50 16 Total: -1.00 -68.56 307.61 -0.82 -69.38 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 0.29 Total: 13.32 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 4.31 Total: -15.50 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.75 Total: -85.44 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -3.56 Total: -27.79 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.88 Total: 46.04 kcal Total: -68.56 -0.82 -69.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000698767299.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.303 kcal (2) G-P(sol) polarization free energy of solvation -68.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds