Wall clock time and date at job start Mon Mar 30 2020 04:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.52993 * 109.47018 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47378 * 65.00120 * 4 3 2 6 6 C 1.42891 * 114.00275 * 179.97438 * 5 4 3 7 7 C 1.53516 * 114.17108 * 210.00019 * 6 5 4 8 8 N 1.47489 * 87.93160 * 220.33143 * 7 6 5 9 9 C 1.46901 * 110.99919 * 138.70122 * 8 7 6 10 10 C 1.53000 * 109.46769 * 169.99763 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46756 * 59.99920 * 16 14 12 18 18 H 1.48490 * 109.47381 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47117 * 300.00527 * 16 14 12 20 20 C 1.47485 * 87.83531 * 27.01026 * 8 7 6 21 21 H 1.08998 * 109.46876 * 60.00538 * 1 2 3 22 22 H 1.09008 * 109.47225 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47426 * 300.00037 * 1 2 3 24 24 H 1.09001 * 109.47027 * 59.99835 * 3 2 1 25 25 H 1.08998 * 109.46807 * 300.00344 * 3 2 1 26 26 H 1.09000 * 109.47657 * 304.99626 * 4 3 2 27 27 H 1.09002 * 109.46978 * 184.99979 * 4 3 2 28 28 H 1.08999 * 113.38286 * 343.08291 * 6 5 4 29 29 H 1.09000 * 113.47464 * 105.56715 * 7 6 5 30 30 H 1.09003 * 113.47697 * 335.09217 * 7 6 5 31 31 H 1.09001 * 109.46874 * 50.00043 * 9 8 7 32 32 H 1.08992 * 109.47407 * 290.00061 * 9 8 7 33 33 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 34 34 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 38 38 H 1.09002 * 113.47514 * 87.75602 * 20 8 7 39 39 H 1.08996 * 113.47041 * 218.22242 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3821 0.4196 -1.3220 7 6 5.9197 0.4799 -2.7587 8 7 6.8330 -0.6233 -2.4063 9 6 6.9176 -1.6051 -3.4958 10 6 8.0496 -2.5927 -3.2055 11 6 8.1381 -3.6149 -4.3404 12 6 9.2526 -4.5880 -4.0543 13 1 9.8389 -4.4878 -3.1528 14 6 9.5232 -5.6071 -4.9427 15 7 8.8089 -5.7295 -6.0403 16 14 10.9051 -6.8129 -4.5884 17 1 10.6330 -7.5155 -3.3087 18 1 10.9902 -7.8058 -5.6893 19 1 12.1904 -6.0764 -4.4850 20 6 5.8465 -1.0419 -1.3930 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8463 -0.8899 26 1 3.8508 0.5685 0.8427 27 1 3.9784 2.1765 0.0902 28 1 5.9385 1.0307 -0.6113 29 1 6.4344 1.4122 -2.9910 30 1 5.1796 0.2072 -3.5111 31 1 7.1174 -1.0893 -4.4350 32 1 5.9743 -2.1458 -3.5717 33 1 8.9930 -2.0520 -3.1295 34 1 7.8498 -3.1085 -2.2663 35 1 7.1947 -4.1556 -4.4168 36 1 8.3381 -3.0989 -5.2795 37 1 8.9990 -6.4466 -6.6652 38 1 5.0868 -1.7205 -1.7810 39 1 6.2991 -1.3992 -0.4681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704200300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:10 Heat of formation + Delta-G solvation = -65.153197 kcal Electronic energy + Delta-G solvation = -17153.699639 eV Core-core repulsion = 14290.622986 eV Total energy + Delta-G solvation = -2863.076653 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.13027 -38.32492 -36.72673 -34.02397 -31.93206 -30.46245 -28.26131 -26.53949 -25.86674 -25.05019 -22.87263 -22.18318 -20.01049 -19.92698 -17.41287 -16.96625 -16.29853 -15.91682 -15.72753 -15.32282 -15.19811 -14.42542 -14.20903 -14.04614 -13.33229 -12.95084 -12.69722 -12.44983 -12.18684 -11.99635 -11.77937 -11.39996 -11.23086 -11.13214 -10.87495 -10.61109 -10.45497 -10.42285 -9.98274 -9.57418 -9.49182 -9.24878 -9.01543 -8.69744 -8.28781 -5.94257 -3.96152 3.37727 3.40414 3.41401 3.44615 3.48970 4.30288 4.46074 4.52076 4.68198 4.87113 4.89965 5.01367 5.03651 5.08933 5.17245 5.35202 5.39850 5.41597 5.42187 5.46996 5.63998 5.73317 5.80917 5.90348 6.03356 6.33677 6.47277 6.80584 6.84560 6.89885 7.13292 7.23160 7.35537 7.74444 7.89877 8.06539 8.50139 9.10869 9.67418 11.17286 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.038946 B = 0.003252 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.775084 B = 8608.042795 C = 8932.577007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.062 3.938 4 C 0.062 3.938 5 O -0.366 6.366 6 C 0.056 3.944 7 C -0.003 4.003 8 N -0.468 5.468 9 C 0.023 3.977 10 C -0.099 4.099 11 C 0.021 3.979 12 C -0.518 4.518 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.015 4.015 21 H 0.041 0.959 22 H 0.086 0.914 23 H 0.039 0.961 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.046 0.954 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.260 0.740 38 H 0.079 0.921 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.395 16.237 12.284 24.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.301 6.301 3 C -0.014 4.014 4 C -0.015 4.015 5 O -0.284 6.284 6 C -0.003 4.003 7 C -0.132 4.132 8 N -0.192 5.192 9 C -0.105 4.105 10 C -0.137 4.137 11 C -0.016 4.016 12 C -0.556 4.556 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.721 3.279 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.144 4.144 21 H 0.060 0.940 22 H 0.105 0.895 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.070 0.930 38 H 0.097 0.903 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.728 16.012 12.131 24.332 hybrid contribution -0.131 -0.683 -0.048 0.697 sum -13.859 15.329 12.083 23.939 Atomic orbital electron populations 1.22750 0.81125 1.02950 0.99740 1.87994 1.19536 1.27213 1.95335 1.22573 0.92570 0.85568 1.00729 1.22564 0.93202 0.97472 0.88252 1.88018 1.21583 1.81318 1.37469 1.23855 0.81078 0.97163 0.98191 1.24111 0.95067 0.97834 0.96149 1.68914 1.33011 1.07287 1.09977 1.22849 1.00031 0.93975 0.93608 1.21520 0.95892 0.95866 1.00400 1.19084 0.96904 0.92826 0.92836 1.21227 1.16345 1.11882 1.06189 0.92719 1.25034 0.96557 0.97813 0.95151 1.69964 1.40132 1.32623 1.10984 0.86647 0.82661 0.80873 0.77758 1.20264 1.21328 1.20233 1.24425 0.94560 0.96805 0.98610 0.94036 0.89513 0.94277 0.91963 0.92436 0.92269 0.91722 0.88409 0.89553 0.90621 0.91292 0.93903 0.92727 0.93537 0.96811 0.96658 0.93012 0.90327 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.28 10.67 -40.09 -0.43 -4.70 16 3 C 0.06 0.53 6.32 37.15 0.23 0.77 16 4 C 0.06 0.57 6.16 37.15 0.23 0.80 16 5 O -0.37 -4.63 10.36 -40.09 -0.42 -5.05 16 6 C 0.06 0.68 4.65 -26.20 -0.12 0.56 16 7 C 0.00 -0.03 7.52 -7.53 -0.06 -0.09 16 8 N -0.47 -7.58 6.33 -244.60 -1.55 -9.13 16 9 C 0.02 0.43 4.82 -3.82 -0.02 0.42 16 10 C -0.10 -2.19 5.48 -26.73 -0.15 -2.34 16 11 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 12 C -0.52 -15.26 9.11 -34.44 -0.31 -15.57 16 13 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.74 13.29 55.43 0.74 -27.00 16 16 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.01 -0.22 7.55 -7.53 -0.06 -0.27 16 21 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 22 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 23 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 1.02 7.88 -51.93 -0.41 0.61 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.08 1.05 7.91 -51.93 -0.41 0.64 16 31 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 32 H 0.04 0.80 7.30 -51.93 -0.38 0.42 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.08 1.23 7.42 -51.93 -0.39 0.84 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -32.90 325.05 -8.19 -41.09 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -7.04 Total: -4.93 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 0.63 Total: -12.41 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: -0.81 Total: -36.13 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.84 Total: -9.75 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.90 -8.19 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704200300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.063 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds