Wall clock time and date at job start Mon Mar 30 2020 04:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00051 * 2 1 4 4 C 1.52993 * 109.47018 * 179.97438 * 3 2 1 5 5 O 1.42901 * 109.47378 * 65.00120 * 4 3 2 6 6 C 1.42891 * 114.00275 * 179.97438 * 5 4 3 7 7 C 1.53516 * 114.17108 * 210.00019 * 6 5 4 8 8 N 1.47489 * 87.93160 * 220.33143 * 7 6 5 9 9 C 1.46901 * 110.99919 * 138.70122 * 8 7 6 10 10 C 1.53000 * 109.46769 * 169.99763 * 9 8 7 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 8 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99563 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 120.00432 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46756 * 59.99920 * 16 14 12 18 18 H 1.48490 * 109.47381 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47117 * 300.00527 * 16 14 12 20 20 C 1.47485 * 87.83531 * 27.01026 * 8 7 6 21 21 H 1.08998 * 109.46876 * 60.00538 * 1 2 3 22 22 H 1.09008 * 109.47225 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47426 * 300.00037 * 1 2 3 24 24 H 1.09001 * 109.47027 * 59.99835 * 3 2 1 25 25 H 1.08998 * 109.46807 * 300.00344 * 3 2 1 26 26 H 1.09000 * 109.47657 * 304.99626 * 4 3 2 27 27 H 1.09002 * 109.46978 * 184.99979 * 4 3 2 28 28 H 1.08999 * 113.38286 * 343.08291 * 6 5 4 29 29 H 1.09000 * 113.47464 * 105.56715 * 7 6 5 30 30 H 1.09003 * 113.47697 * 335.09217 * 7 6 5 31 31 H 1.09001 * 109.46874 * 50.00043 * 9 8 7 32 32 H 1.08992 * 109.47407 * 290.00061 * 9 8 7 33 33 H 1.09002 * 109.47398 * 300.00295 * 10 9 8 34 34 H 1.09001 * 109.47194 * 60.00475 * 10 9 8 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97002 * 119.99731 * 180.02562 * 15 14 12 38 38 H 1.09002 * 113.47514 * 87.75602 * 20 8 7 39 39 H 1.08996 * 113.47041 * 218.22242 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9658 0.5792 -1.2201 6 6 5.3821 0.4196 -1.3220 7 6 5.9197 0.4799 -2.7587 8 7 6.8330 -0.6233 -2.4063 9 6 6.9176 -1.6051 -3.4958 10 6 8.0496 -2.5927 -3.2055 11 6 8.1381 -3.6149 -4.3404 12 6 9.2526 -4.5880 -4.0543 13 1 9.8389 -4.4878 -3.1528 14 6 9.5232 -5.6071 -4.9427 15 7 8.8089 -5.7295 -6.0403 16 14 10.9051 -6.8129 -4.5884 17 1 10.6330 -7.5155 -3.3087 18 1 10.9902 -7.8058 -5.6893 19 1 12.1904 -6.0764 -4.4850 20 6 5.8465 -1.0419 -1.3930 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.6886 1.8464 0.8900 25 1 1.6886 1.8463 -0.8899 26 1 3.8508 0.5685 0.8427 27 1 3.9784 2.1765 0.0902 28 1 5.9385 1.0307 -0.6113 29 1 6.4344 1.4122 -2.9910 30 1 5.1796 0.2072 -3.5111 31 1 7.1174 -1.0893 -4.4350 32 1 5.9743 -2.1458 -3.5717 33 1 8.9930 -2.0520 -3.1295 34 1 7.8498 -3.1085 -2.2663 35 1 7.1947 -4.1556 -4.4168 36 1 8.3381 -3.0989 -5.2795 37 1 8.9990 -6.4466 -6.6652 38 1 5.0868 -1.7205 -1.7810 39 1 6.2991 -1.3992 -0.4681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704200300.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:10 Heat of formation + Delta-G solvation = -89.513227 kcal Electronic energy + Delta-G solvation = -17154.755969 eV Core-core repulsion = 14290.622986 eV Total energy + Delta-G solvation = -2864.132984 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.25598 -39.07358 -37.67026 -36.00326 -33.89021 -31.32287 -29.86913 -27.23222 -27.04774 -26.71440 -24.03012 -23.45404 -21.84916 -21.03406 -18.62524 -18.14749 -17.64980 -17.02296 -16.66496 -16.49050 -16.39256 -16.08672 -15.39124 -15.10467 -14.67896 -14.38255 -14.01924 -13.70466 -13.65317 -13.21132 -13.03844 -12.69947 -12.56445 -12.53011 -12.29616 -12.12413 -11.92128 -11.85097 -11.43797 -11.35659 -11.04944 -10.63515 -10.56278 -10.41915 -10.00242 -8.21124 -6.32768 1.39118 1.43049 1.51048 2.40157 2.53357 2.88754 3.11538 3.15709 3.42021 3.90065 3.99810 4.07763 4.13552 4.27060 4.28712 4.44800 4.49719 4.51319 4.58787 4.60391 4.66727 4.68066 4.73258 4.79042 4.82859 4.86711 4.92001 5.06422 5.20021 5.34287 5.49965 5.72745 5.83452 5.97547 6.19825 6.24957 6.33257 6.83411 7.36402 8.90850 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.038946 B = 0.003252 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.775084 B = 8608.042795 C = 8932.577007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.058 3.942 4 C 0.054 3.946 5 O -0.388 6.388 6 C 0.075 3.925 7 C -0.004 4.004 8 N -0.477 5.477 9 C 0.035 3.965 10 C -0.083 4.083 11 C 0.025 3.975 12 C -0.546 4.546 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.266 1.266 20 C -0.024 4.024 21 H 0.046 0.954 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.044 0.956 35 H -0.011 1.011 36 H -0.007 1.007 37 H 0.264 0.736 38 H 0.062 0.938 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.075 17.306 13.784 26.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.018 4.018 4 C -0.023 4.023 5 O -0.306 6.306 6 C 0.017 3.983 7 C -0.132 4.132 8 N -0.201 5.201 9 C -0.094 4.094 10 C -0.121 4.121 11 C -0.012 4.012 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.190 1.190 20 C -0.153 4.153 21 H 0.065 0.935 22 H 0.106 0.894 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.142 0.858 29 H 0.125 0.875 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.007 0.993 36 H 0.011 0.989 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.422 17.103 13.648 25.670 hybrid contribution -0.312 -0.980 -0.503 1.145 sum -13.734 16.124 13.145 24.928 Atomic orbital electron populations 1.22891 0.79707 1.03488 1.00920 1.87938 1.21338 1.28980 1.95612 1.22756 0.92066 0.84886 1.02127 1.22866 0.93890 0.98713 0.86787 1.87997 1.21474 1.81828 1.39295 1.23718 0.81532 0.95345 0.97721 1.24173 0.94585 0.97400 0.97070 1.68842 1.34511 1.07366 1.09350 1.22586 0.98148 0.93911 0.94732 1.21260 0.97308 0.95393 0.98181 1.18980 0.95142 0.93426 0.93675 1.21661 1.17194 1.12880 1.06634 0.92289 1.26029 0.99352 0.99843 0.94733 1.70099 1.41874 1.33500 1.11987 0.85456 0.79158 0.78177 0.78001 1.19159 1.20612 1.19035 1.24499 0.94021 0.98591 0.98192 0.93520 0.89441 0.92371 0.89120 0.92348 0.92335 0.88790 0.85774 0.87528 0.91366 0.91276 0.94591 0.92851 0.93738 0.99300 0.98878 0.92685 0.91991 0.89211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 113.37 1.25 1.61 16 2 O -0.42 -8.99 10.67 -144.34 -1.54 -10.53 16 3 C 0.06 0.88 6.32 71.98 0.45 1.33 16 4 C 0.05 0.87 6.16 71.98 0.44 1.31 16 5 O -0.39 -9.20 10.36 -144.34 -1.49 -10.69 16 6 C 0.08 1.70 4.65 30.94 0.14 1.85 16 7 C 0.00 -0.09 7.52 83.58 0.63 0.54 16 8 N -0.48 -15.05 6.33 -928.18 -5.88 -20.93 16 9 C 0.03 1.31 4.82 86.30 0.42 1.73 16 10 C -0.08 -3.76 5.48 30.59 0.17 -3.59 16 11 C 0.03 1.42 4.97 29.85 0.15 1.57 16 12 C -0.55 -32.60 9.11 25.60 0.23 -32.36 16 13 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.93 -58.66 13.29 21.45 0.28 -58.38 16 16 Si 0.97 45.57 29.54 68.60 2.03 47.59 16 17 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 C -0.02 -0.68 7.55 83.58 0.63 -0.05 16 21 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 23 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.12 2.16 7.88 -2.39 -0.02 2.14 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.07 1.84 7.91 -2.39 -0.02 1.83 16 31 H 0.07 2.58 8.08 -2.39 -0.02 2.56 16 32 H 0.04 1.39 7.30 -2.39 -0.02 1.37 16 33 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 37 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.06 1.97 7.42 -2.39 -0.02 1.96 16 39 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -71.12 325.05 -0.64 -71.76 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 0.98 Total: 6.89 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.98 Total: -25.72 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -5.59 Total: -79.31 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -3.03 Total: -21.22 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.12 -0.64 -71.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704200300.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.748 kcal (2) G-P(sol) polarization free energy of solvation -71.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds