Wall clock time and date at job start Mon Mar 30 2020 04:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00202 * 2 1 4 4 C 1.53789 * 113.61827 * 210.00437 * 3 2 1 5 5 C 1.53780 * 87.07893 * 219.93500 * 4 3 2 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 3 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47234 * 180.02562 * 8 7 6 10 10 O 1.42897 * 109.46832 * 65.00104 * 9 8 7 11 11 C 1.42904 * 113.99881 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47457 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99802 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99488 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00104 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47301 * 90.00122 * 16 14 12 18 18 H 1.48498 * 109.47043 * 209.99759 * 16 14 12 19 19 H 1.48497 * 109.47326 * 329.99924 * 16 14 12 20 20 C 1.53777 * 87.17394 * 25.38935 * 5 4 3 21 21 H 1.09001 * 109.46636 * 299.99905 * 1 2 3 22 22 H 1.08999 * 109.46940 * 59.99671 * 1 2 3 23 23 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 24 24 H 1.08997 * 112.84930 * 341.19752 * 3 2 1 25 25 H 1.08992 * 113.61445 * 105.38302 * 4 3 2 26 26 H 1.09001 * 113.61082 * 334.48179 * 4 3 2 27 27 H 1.08998 * 113.61602 * 270.79563 * 5 4 3 28 28 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 29 29 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 30 30 H 1.00898 * 110.99915 * 56.05185 * 7 6 5 31 31 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 32 32 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 33 33 H 1.09000 * 109.47063 * 185.00319 * 9 8 7 34 34 H 1.09003 * 109.46965 * 305.00257 * 9 8 7 35 35 H 1.09001 * 109.46884 * 299.99870 * 11 10 9 36 36 H 1.09001 * 109.47225 * 59.99348 * 11 10 9 37 37 H 0.96999 * 119.99522 * 179.97438 * 15 14 12 38 38 H 1.08999 * 113.61825 * 89.16304 * 20 5 4 39 39 H 1.09009 * 113.61337 * 220.05752 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3719 -0.7046 5 6 3.8220 2.3199 0.4210 6 6 5.2538 2.0712 0.8997 7 7 5.6130 3.0743 1.9110 8 6 6.9846 2.8667 2.3944 9 6 7.3215 3.9276 3.4442 10 8 6.4857 3.7469 4.5891 11 6 6.7202 4.6922 5.6348 12 6 5.7897 4.4091 6.7859 13 1 5.0890 3.5895 6.7249 14 6 5.8321 5.1970 7.9166 15 7 6.6850 6.1954 7.9907 16 14 4.6782 4.8465 9.3431 17 1 5.3267 3.8966 10.2825 18 1 4.3708 6.1135 10.0539 19 1 3.4197 4.2506 8.8269 20 6 2.7531 1.6532 1.3028 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.3138 2.0788 -0.3237 25 1 3.3381 1.8458 -1.6854 26 1 3.9095 0.4217 -0.7126 27 1 3.6222 3.3707 0.2117 28 1 5.3232 1.0747 1.3357 29 1 5.9378 2.1464 0.0544 30 1 4.9550 3.0684 2.6759 31 1 7.0665 1.8756 2.8407 32 1 7.6803 2.9477 1.5592 33 1 8.3665 3.8291 3.7379 34 1 7.1539 4.9197 3.0249 35 1 7.7527 4.6100 5.9742 36 1 6.5399 5.7000 5.2608 37 1 6.7146 6.7499 8.7860 38 1 3.1165 0.7800 1.8447 39 1 2.2138 2.3540 1.9403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705506579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:29 Heat of formation + Delta-G solvation = -83.699570 kcal Electronic energy + Delta-G solvation = -17221.383468 eV Core-core repulsion = 14357.502584 eV Total energy + Delta-G solvation = -2863.880884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.69315 -37.27870 -36.49599 -34.68299 -32.66246 -29.67624 -27.37011 -26.76389 -25.92051 -25.24351 -22.34365 -21.94472 -21.31233 -19.59406 -16.98472 -16.40282 -15.93401 -15.82457 -15.45896 -15.21826 -15.15445 -14.38519 -14.20793 -13.73455 -13.49388 -12.88829 -12.71099 -12.52516 -12.14041 -11.86552 -11.70171 -11.49652 -11.32924 -10.95135 -10.86474 -10.79173 -10.71315 -10.41780 -10.28715 -9.97477 -9.61286 -9.09687 -8.81241 -8.17733 -8.15552 -6.10188 -4.11927 3.30543 3.35497 3.40743 3.60657 4.25204 4.35621 4.46444 4.59816 4.70336 4.79549 4.96862 5.05007 5.16812 5.22922 5.26267 5.40345 5.42140 5.55434 5.60837 5.66473 5.70654 5.73332 5.82266 5.95155 6.08436 6.10872 6.23899 6.30389 6.38683 7.05458 7.12797 7.27135 7.45319 7.70099 7.79845 8.16454 8.59236 9.01387 9.52909 11.01394 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.004025 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.042390 B = 6954.204129 C = 8047.743174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.059 3.941 4 C -0.130 4.130 5 C -0.105 4.105 6 C 0.071 3.929 7 N -0.688 5.688 8 C 0.065 3.935 9 C 0.062 3.938 10 O -0.400 6.400 11 C 0.197 3.803 12 C -0.515 4.515 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.908 3.092 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.154 4.154 21 H 0.042 0.958 22 H 0.039 0.961 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.101 0.899 28 H 0.029 0.971 29 H 0.069 0.931 30 H 0.356 0.644 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.046 0.954 35 H 0.004 0.996 36 H 0.006 0.994 37 H 0.264 0.736 38 H 0.088 0.912 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 -9.023 -17.215 20.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.002 3.998 4 C -0.168 4.168 5 C -0.124 4.124 6 C -0.058 4.058 7 N -0.320 5.320 8 C -0.064 4.064 9 C -0.016 4.016 10 O -0.320 6.320 11 C 0.123 3.877 12 C -0.553 4.553 13 H 0.084 0.916 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.735 3.265 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.196 1.196 20 C -0.192 4.192 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.104 0.896 25 H 0.090 0.910 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.175 0.825 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.022 0.978 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.247 -8.712 -17.530 20.874 hybrid contribution -0.599 -0.368 1.383 1.551 sum -7.846 -9.080 -16.148 20.118 Atomic orbital electron populations 1.22771 0.81429 1.02575 0.99905 1.87938 1.19472 1.27775 1.94628 1.23788 0.93811 0.84880 0.97348 1.23241 0.95272 1.00309 0.97956 1.22334 0.94284 0.99606 0.96191 1.21867 0.95090 0.93252 0.95633 1.60480 1.04171 1.49581 1.17808 1.21947 0.90595 0.97623 0.96233 1.22299 0.93967 0.97741 0.87599 1.87786 1.60244 1.57410 1.26513 1.20172 0.96189 0.87164 0.84189 1.21058 1.19800 1.15119 0.99306 0.91632 1.24951 0.96106 0.94855 0.98617 1.69968 1.36320 1.18349 1.29136 0.86338 0.80889 0.77632 0.81637 1.20494 1.21068 1.19649 1.23633 0.97622 1.00991 0.96927 0.93958 0.94189 0.89876 0.89618 0.91032 0.89243 0.88106 0.95291 0.91300 0.82512 0.94857 0.90754 0.94193 0.93574 0.97846 0.97616 0.92662 0.89312 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.85 101.05 1.10 1.34 16 2 O -0.38 -4.29 10.72 -35.23 -0.38 -4.67 16 3 C 0.06 0.60 4.31 -25.83 -0.11 0.49 16 4 C -0.13 -1.24 7.48 -25.92 -0.19 -1.43 16 5 C -0.11 -1.14 3.89 -89.81 -0.35 -1.49 16 6 C 0.07 0.87 5.51 -3.82 -0.02 0.85 16 7 N -0.69 -10.44 6.50 -113.77 -0.74 -11.18 16 8 C 0.07 1.01 6.11 -3.82 -0.02 0.99 16 9 C 0.06 1.18 6.28 37.16 0.23 1.41 16 10 O -0.40 -9.67 9.85 -35.23 -0.35 -10.02 16 11 C 0.20 5.48 5.69 36.00 0.20 5.68 16 12 C -0.51 -15.27 9.43 -34.44 -0.32 -15.59 16 13 H 0.07 1.92 7.81 -52.48 -0.41 1.51 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 C -0.15 -1.74 7.48 -25.83 -0.19 -1.93 16 21 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 27 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.03 0.36 7.87 -51.93 -0.41 -0.05 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.36 6.02 8.29 -39.29 -0.33 5.70 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.00 0.11 8.14 -51.93 -0.42 -0.32 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.09 1.09 7.92 -51.93 -0.41 0.68 16 39 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -31.39 325.71 -7.64 -39.03 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -7.02 Total: -0.47 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 0.22 Total: -8.16 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.00 Total: -37.56 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.72 Total: -14.69 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.39 -7.64 -39.03 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705506579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.668 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds