Wall clock time and date at job start Mon Mar 30 2020 04:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42897 * 114.00202 * 2 1 4 4 C 1.53789 * 113.61827 * 210.00437 * 3 2 1 5 5 C 1.53780 * 87.07893 * 219.93500 * 4 3 2 6 6 C 1.53006 * 113.61053 * 139.97929 * 5 4 3 7 7 N 1.46902 * 109.46626 * 176.52548 * 6 5 4 8 8 C 1.46905 * 110.99800 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47234 * 180.02562 * 8 7 6 10 10 O 1.42897 * 109.46832 * 65.00104 * 9 8 7 11 11 C 1.42904 * 113.99881 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47457 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99802 * 359.97438 * 12 11 10 14 14 C 1.37874 * 120.00287 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99488 * 359.97438 * 14 12 11 16 16 Si 1.86792 * 120.00104 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47301 * 90.00122 * 16 14 12 18 18 H 1.48498 * 109.47043 * 209.99759 * 16 14 12 19 19 H 1.48497 * 109.47326 * 329.99924 * 16 14 12 20 20 C 1.53777 * 87.17394 * 25.38935 * 5 4 3 21 21 H 1.09001 * 109.46636 * 299.99905 * 1 2 3 22 22 H 1.08999 * 109.46940 * 59.99671 * 1 2 3 23 23 H 1.09001 * 109.47295 * 180.02562 * 1 2 3 24 24 H 1.08997 * 112.84930 * 341.19752 * 3 2 1 25 25 H 1.08992 * 113.61445 * 105.38302 * 4 3 2 26 26 H 1.09001 * 113.61082 * 334.48179 * 4 3 2 27 27 H 1.08998 * 113.61602 * 270.79563 * 5 4 3 28 28 H 1.08993 * 109.46955 * 296.52894 * 6 5 4 29 29 H 1.09000 * 109.47050 * 56.52723 * 6 5 4 30 30 H 1.00898 * 110.99915 * 56.05185 * 7 6 5 31 31 H 1.09002 * 109.47091 * 300.00139 * 8 7 6 32 32 H 1.09001 * 109.46854 * 60.00166 * 8 7 6 33 33 H 1.09000 * 109.47063 * 185.00319 * 9 8 7 34 34 H 1.09003 * 109.46965 * 305.00257 * 9 8 7 35 35 H 1.09001 * 109.46884 * 299.99870 * 11 10 9 36 36 H 1.09001 * 109.47225 * 59.99348 * 11 10 9 37 37 H 0.96999 * 119.99522 * 179.97438 * 15 14 12 38 38 H 1.08999 * 113.61825 * 89.16304 * 20 5 4 39 39 H 1.09009 * 113.61337 * 220.05752 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3719 -0.7046 5 6 3.8220 2.3199 0.4210 6 6 5.2538 2.0712 0.8997 7 7 5.6130 3.0743 1.9110 8 6 6.9846 2.8667 2.3944 9 6 7.3215 3.9276 3.4442 10 8 6.4857 3.7469 4.5891 11 6 6.7202 4.6922 5.6348 12 6 5.7897 4.4091 6.7859 13 1 5.0890 3.5895 6.7249 14 6 5.8321 5.1970 7.9166 15 7 6.6850 6.1954 7.9907 16 14 4.6782 4.8465 9.3431 17 1 5.3267 3.8966 10.2825 18 1 4.3708 6.1135 10.0539 19 1 3.4197 4.2506 8.8269 20 6 2.7531 1.6532 1.3028 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.3138 2.0788 -0.3237 25 1 3.3381 1.8458 -1.6854 26 1 3.9095 0.4217 -0.7126 27 1 3.6222 3.3707 0.2117 28 1 5.3232 1.0747 1.3357 29 1 5.9378 2.1464 0.0544 30 1 4.9550 3.0684 2.6759 31 1 7.0665 1.8756 2.8407 32 1 7.6803 2.9477 1.5592 33 1 8.3665 3.8291 3.7379 34 1 7.1539 4.9197 3.0249 35 1 7.7527 4.6100 5.9742 36 1 6.5399 5.7000 5.2608 37 1 6.7146 6.7499 8.7860 38 1 3.1165 0.7800 1.8447 39 1 2.2138 2.3540 1.9403 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705506579.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:28 Heat of formation + Delta-G solvation = -105.852372 kcal Electronic energy + Delta-G solvation = -17222.344086 eV Core-core repulsion = 14357.502584 eV Total energy + Delta-G solvation = -2864.841502 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52965 -38.87250 -37.57419 -35.96117 -34.82166 -31.08661 -29.12419 -27.81196 -26.83218 -26.27445 -24.52495 -22.89598 -22.67081 -20.45424 -18.65974 -17.81102 -17.49860 -16.94857 -16.62955 -16.53945 -16.30930 -16.02054 -15.38999 -15.22268 -14.80640 -14.30858 -13.83660 -13.53775 -13.38318 -13.19062 -13.10173 -12.78490 -12.68424 -12.59623 -12.36038 -12.29271 -11.97282 -11.74597 -11.40105 -11.28271 -11.17880 -10.87394 -10.39394 -10.23845 -9.36883 -8.32871 -6.45480 1.39583 1.42482 1.54546 2.34167 2.86929 3.00984 3.19038 3.23576 3.62380 3.73162 3.89274 3.94089 4.18425 4.27860 4.37490 4.47693 4.52819 4.56443 4.59050 4.73256 4.78436 4.83327 4.83919 4.85183 4.87740 4.89840 4.97020 5.08124 5.17649 5.23926 5.45185 5.53894 5.94941 6.11364 6.32905 6.40012 6.52485 6.80836 7.26546 8.79603 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.004025 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.042390 B = 6954.204129 C = 8047.743174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.403 6.403 3 C 0.061 3.939 4 C -0.120 4.120 5 C -0.101 4.101 6 C 0.073 3.927 7 N -0.696 5.696 8 C 0.074 3.926 9 C 0.054 3.946 10 O -0.410 6.410 11 C 0.211 3.789 12 C -0.549 4.549 13 H 0.062 0.938 14 C 0.006 3.994 15 N -0.931 5.931 16 Si 0.984 3.016 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.264 1.264 20 C -0.161 4.161 21 H 0.042 0.958 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.102 0.898 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.025 0.975 29 H 0.084 0.916 30 H 0.342 0.658 31 H 0.030 0.970 32 H 0.106 0.894 33 H 0.049 0.951 34 H 0.044 0.956 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.271 0.729 38 H 0.073 0.927 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.383 -9.605 -17.841 21.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.004 3.996 4 C -0.158 4.158 5 C -0.120 4.120 6 C -0.056 4.056 7 N -0.327 5.327 8 C -0.055 4.055 9 C -0.024 4.024 10 O -0.330 6.330 11 C 0.136 3.864 12 C -0.586 4.586 13 H 0.080 0.920 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.807 3.193 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.189 1.189 20 C -0.199 4.199 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.112 0.888 24 H 0.120 0.880 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.119 0.881 28 H 0.043 0.957 29 H 0.103 0.897 30 H 0.159 0.841 31 H 0.048 0.952 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.003 0.997 36 H 0.003 0.997 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.154 -9.305 -18.190 21.999 hybrid contribution -0.277 -0.187 1.508 1.544 sum -8.431 -9.492 -16.683 20.964 Atomic orbital electron populations 1.22953 0.79986 1.03657 1.00678 1.87903 1.21202 1.28381 1.94688 1.23841 0.94404 0.85058 0.96334 1.23175 0.94568 0.99784 0.98272 1.22282 0.93190 0.99877 0.96668 1.21939 0.96331 0.92204 0.95117 1.60543 1.03610 1.50900 1.17644 1.21927 0.91652 0.95915 0.96040 1.22619 0.93846 0.99179 0.86709 1.87752 1.61590 1.56365 1.27260 1.19793 0.94786 0.86827 0.84970 1.21391 1.20692 1.15813 1.00734 0.91997 1.25976 0.97666 0.94166 1.01464 1.70075 1.37591 1.19032 1.30314 0.85169 0.78538 0.78040 0.77573 1.19301 1.19866 1.18855 1.23639 0.98350 1.00366 0.97541 0.93897 0.92669 0.88765 0.88022 0.89161 0.89576 0.88084 0.95682 0.89746 0.84063 0.95151 0.87580 0.93324 0.93779 0.99738 0.99705 0.92016 0.90829 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.85 113.37 1.23 1.58 16 2 O -0.40 -8.64 10.72 -148.98 -1.60 -10.23 16 3 C 0.06 1.16 4.31 31.18 0.13 1.29 16 4 C -0.12 -2.07 7.48 31.12 0.23 -1.84 16 5 C -0.10 -2.08 3.89 -10.27 -0.04 -2.12 16 6 C 0.07 1.69 5.51 86.31 0.48 2.16 16 7 N -0.70 -20.63 6.50 -513.86 -3.34 -23.97 16 8 C 0.07 2.21 6.11 86.30 0.53 2.74 16 9 C 0.05 2.04 6.28 71.98 0.45 2.49 16 10 O -0.41 -20.25 9.85 -148.98 -1.47 -21.72 16 11 C 0.21 12.11 5.69 71.24 0.41 12.51 16 12 C -0.55 -33.10 9.43 25.60 0.24 -32.86 16 13 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 14 C 0.01 0.33 5.46 84.65 0.46 0.80 16 15 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 16 Si 0.98 44.69 29.54 68.60 2.03 46.71 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 20 C -0.16 -3.60 7.48 31.18 0.23 -3.37 16 21 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 22 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.10 1.58 7.87 -2.39 -0.02 1.56 16 25 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.09 1.56 8.10 -2.39 -0.02 1.54 16 27 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.02 0.61 7.87 -2.39 -0.02 0.59 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.34 11.69 8.29 -89.70 -0.74 10.95 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 35 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 36 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 37 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.07 1.85 7.92 -2.39 -0.02 1.83 16 39 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -67.19 325.71 0.52 -66.67 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.26 Total: 15.42 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: 4.35 Total: -16.62 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -3.06 Total: -80.24 kcal Atomic # 8 Polarization: -28.88 SS G_CDS: -3.06 Total: -31.95 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -67.19 0.52 -66.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705506579.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.182 kcal (2) G-P(sol) polarization free energy of solvation -67.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds