Wall clock time and date at job start Mon Mar 30 2020 03:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.50695 * 109.46965 * 239.99968 * 2 1 3 5 5 H 1.08001 * 120.00270 * 239.99844 * 4 2 1 6 6 C 1.37884 * 120.00021 * 59.72620 * 4 2 1 7 7 N 1.31518 * 119.99599 * 0.27209 * 6 4 2 8 8 Si 1.86794 * 120.00088 * 180.27303 * 6 4 2 9 9 H 1.48504 * 109.47282 * 60.00021 * 8 6 4 10 10 H 1.48502 * 109.47056 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47317 * 299.99629 * 8 6 4 12 12 N 1.46903 * 109.47124 * 119.99944 * 2 1 3 13 13 C 1.46841 * 110.99674 * 179.02710 * 12 2 1 14 14 C 1.53038 * 109.52215 * 185.84367 * 13 12 2 15 15 C 1.53121 * 109.27605 * 300.81966 * 14 13 12 16 16 C 1.53123 * 109.15977 * 57.65309 * 15 14 13 17 17 H 1.08998 * 109.50145 * 62.29106 * 16 15 14 18 18 C 1.53002 * 109.53451 * 182.38022 * 16 15 14 19 19 O 1.42899 * 109.47731 * 294.83048 * 18 16 15 20 20 C 1.46842 * 111.00049 * 303.24137 * 12 2 1 21 21 H 1.08998 * 109.46748 * 54.15317 * 20 12 2 22 22 C 1.53002 * 109.46188 * 294.17290 * 20 12 2 23 23 O 1.42906 * 109.46925 * 66.82281 * 22 20 12 24 24 H 1.09000 * 109.47492 * 299.99716 * 1 2 3 25 25 H 1.09001 * 109.47849 * 59.99929 * 1 2 3 26 26 H 1.09006 * 109.47125 * 179.97438 * 1 2 3 27 27 H 0.97005 * 119.99820 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.46606 * 305.85763 * 13 12 2 29 29 H 1.08996 * 109.46448 * 65.82519 * 13 12 2 30 30 H 1.08998 * 109.50254 * 180.88506 * 14 13 12 31 31 H 1.09000 * 109.53724 * 60.77767 * 14 13 12 32 32 H 1.09005 * 109.52504 * 297.74897 * 15 14 13 33 33 H 1.09002 * 109.52531 * 177.56252 * 15 14 13 34 34 H 1.09007 * 109.46511 * 54.82900 * 18 16 15 35 35 H 1.09003 * 109.47154 * 174.81987 * 18 16 15 36 36 H 0.96698 * 114.00218 * 180.02562 * 19 18 16 37 37 H 1.08997 * 109.47371 * 186.81916 * 22 20 12 38 38 H 1.08997 * 109.47464 * 306.83156 * 22 20 12 39 39 H 0.96696 * 114.00032 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9384 0.8267 -2.6033 8 14 2.3108 -1.1276 -4.0079 9 1 1.8152 -2.5275 -4.0022 10 1 1.8109 -0.4311 -5.2204 11 1 3.7958 -1.1283 -4.0138 12 7 2.0197 -0.6925 1.1995 13 6 3.4874 -0.7322 1.2217 14 6 3.9581 -1.5833 2.4034 15 6 3.4254 -0.9789 3.7055 16 6 1.8975 -0.9041 3.6367 17 1 1.4877 -1.9100 3.5457 18 6 1.3597 -0.2467 4.9094 19 8 1.6429 -1.0823 6.0335 20 6 1.4866 -0.0729 2.4194 21 1 0.3991 -0.0298 2.3595 22 6 2.0461 1.3445 2.5575 23 8 1.5321 2.1641 1.5058 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7004 1.1556 -3.4844 28 1 3.8531 -1.1679 0.2920 29 1 3.8766 0.2805 1.3257 30 1 5.0476 -1.5997 2.4289 31 1 3.5812 -2.6001 2.2933 32 1 3.8337 0.0234 3.8357 33 1 3.7220 -1.6060 4.5463 34 1 1.8384 0.7228 5.0476 35 1 0.2819 -0.1103 4.8203 36 1 1.3292 -0.7273 6.8764 37 1 1.7489 1.7602 3.5203 38 1 3.1338 1.3135 2.4952 39 1 1.8452 3.0786 1.5310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709782496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:53 Heat of formation + Delta-G solvation = -92.505792 kcal Electronic energy + Delta-G solvation = -19432.344681 eV Core-core repulsion = 16568.081930 eV Total energy + Delta-G solvation = -2864.262751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63362 -36.76962 -35.49216 -34.14405 -31.82862 -31.40016 -28.51464 -26.29863 -25.25159 -24.59352 -22.73702 -21.15348 -19.63836 -18.08793 -17.52115 -16.69160 -16.21939 -15.60562 -15.06592 -14.52002 -14.12071 -14.03264 -13.68348 -12.88830 -12.80402 -12.53808 -12.33275 -12.13458 -11.73084 -11.40622 -11.31043 -10.85394 -10.66657 -10.60296 -10.37693 -10.22667 -10.11265 -9.89619 -9.81710 -9.73304 -9.34710 -9.28186 -8.55644 -8.26705 -6.88941 -5.85752 -3.89262 3.38660 3.42773 3.45970 4.20859 4.51955 4.62318 5.00726 5.10793 5.25024 5.37599 5.41612 5.44389 5.58275 5.66253 5.73099 5.82517 5.93523 5.96844 6.12726 6.24702 6.32143 6.42793 6.53043 6.63504 6.87621 6.89385 7.15989 7.30825 7.42540 7.61553 7.83539 7.90875 8.00148 8.18593 8.43974 8.53499 8.80315 9.19327 9.73586 11.19903 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.007271 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.882824 B = 3850.131968 C = 4223.804619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.207 3.793 3 H 0.041 0.959 4 C -0.503 4.503 5 H 0.057 0.943 6 C 0.058 3.942 7 N -0.891 5.891 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.522 5.522 13 C 0.059 3.941 14 C -0.119 4.119 15 C -0.109 4.109 16 C -0.076 4.076 17 H 0.087 0.913 18 C 0.078 3.922 19 O -0.572 6.572 20 C 0.089 3.911 21 H 0.088 0.912 22 C 0.038 3.962 23 O -0.540 6.540 24 H 0.011 0.989 25 H 0.081 0.919 26 H 0.022 0.978 27 H 0.257 0.743 28 H 0.084 0.916 29 H 0.021 0.979 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.046 0.954 36 H 0.374 0.626 37 H 0.031 0.969 38 H 0.046 0.954 39 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.618 1.220 13.847 14.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.102 3.898 3 H 0.059 0.941 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.530 5.530 8 Si 0.720 3.280 9 H -0.204 1.204 10 H -0.215 1.215 11 H -0.205 1.205 12 N -0.246 5.246 13 C -0.069 4.069 14 C -0.157 4.157 15 C -0.146 4.146 16 C -0.095 4.095 17 H 0.105 0.895 18 C 0.000 4.000 19 O -0.377 6.377 20 C -0.021 4.021 21 H 0.106 0.894 22 C -0.041 4.041 23 O -0.344 6.344 24 H 0.030 0.970 25 H 0.099 0.901 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.102 0.898 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.219 0.781 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.327 -0.091 13.012 13.219 hybrid contribution 0.581 1.312 -0.223 1.452 sum 2.908 1.221 12.789 13.172 Atomic orbital electron populations 1.21765 0.98257 0.98377 0.99935 1.19475 0.92077 0.93874 0.84340 0.94142 1.21227 1.30665 1.12036 0.90278 0.92443 1.24895 0.95458 0.95162 0.98716 1.69922 1.37003 1.23074 1.23016 0.86680 0.78957 0.79837 0.82565 1.20410 1.21499 1.20529 1.62209 1.06779 1.53748 1.01897 1.21985 0.89600 0.97124 0.98219 1.21666 0.98967 1.00457 0.94628 1.21566 0.94660 1.00404 0.97988 1.21123 0.96385 1.00661 0.91328 0.89455 1.22362 0.98596 0.92638 0.86396 1.86493 1.83563 1.49997 1.17624 1.21675 1.00708 0.88548 0.91131 0.89376 1.23133 0.98030 0.93669 0.89293 1.86963 1.73299 1.23872 1.50277 0.97044 0.90055 0.95924 0.93258 0.89766 0.96145 0.92603 0.91515 0.92967 0.91947 0.93826 0.93612 0.78053 0.95061 0.93610 0.79508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.42 37.16 0.31 -2.91 16 2 C 0.21 5.33 1.44 -68.86 -0.10 5.23 16 3 H 0.04 1.14 5.45 -51.93 -0.28 0.86 16 4 C -0.50 -14.14 7.86 -34.44 -0.27 -14.41 16 5 H 0.06 1.61 6.63 -52.49 -0.35 1.27 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -26.04 11.31 55.43 0.63 -25.41 16 8 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 N -0.52 -11.40 4.46 -220.16 -0.98 -12.38 16 13 C 0.06 1.18 4.95 -3.84 -0.02 1.16 16 14 C -0.12 -1.94 6.09 -26.65 -0.16 -2.10 16 15 C -0.11 -1.61 4.85 -26.61 -0.13 -1.74 16 16 C -0.08 -1.18 2.36 -90.54 -0.21 -1.40 16 17 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 18 C 0.08 0.98 5.91 37.16 0.22 1.20 16 19 O -0.57 -6.85 13.25 -35.23 -0.47 -7.32 16 20 C 0.09 1.64 2.00 -67.73 -0.14 1.50 16 21 H 0.09 1.74 5.92 -51.93 -0.31 1.44 16 22 C 0.04 0.64 5.42 37.16 0.20 0.84 16 23 O -0.54 -10.17 9.81 -35.23 -0.35 -10.51 16 24 H 0.01 0.26 5.81 -51.93 -0.30 -0.04 16 25 H 0.08 2.29 6.06 -51.93 -0.31 1.98 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.08 1.85 6.23 -51.93 -0.32 1.53 16 29 H 0.02 0.41 6.05 -51.93 -0.31 0.10 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.74 6.72 -51.93 -0.35 0.39 16 33 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 34 H 0.04 0.50 6.54 -51.93 -0.34 0.16 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.37 2.61 9.12 45.56 0.42 3.02 16 37 H 0.03 0.44 6.17 -51.93 -0.32 0.12 16 38 H 0.05 0.76 4.81 -51.93 -0.25 0.51 16 39 H 0.36 5.09 9.12 45.56 0.42 5.50 16 LS Contribution 285.85 15.07 4.31 4.31 Total: -1.00 -31.80 285.85 -6.55 -38.35 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.28 Total: 7.21 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -0.39 Total: -11.07 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.36 Total: -37.80 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.81 Total: -17.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.80 -6.55 -38.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709782496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.159 kcal (2) G-P(sol) polarization free energy of solvation -31.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds