Wall clock time and date at job start Mon Mar 30 2020 03:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46914 * 2 1 4 4 C 1.50695 * 109.46965 * 239.99968 * 2 1 3 5 5 H 1.08001 * 120.00270 * 239.99844 * 4 2 1 6 6 C 1.37884 * 120.00021 * 59.72620 * 4 2 1 7 7 N 1.31518 * 119.99599 * 0.27209 * 6 4 2 8 8 Si 1.86794 * 120.00088 * 180.27303 * 6 4 2 9 9 H 1.48504 * 109.47282 * 60.00021 * 8 6 4 10 10 H 1.48502 * 109.47056 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47317 * 299.99629 * 8 6 4 12 12 N 1.46903 * 109.47124 * 119.99944 * 2 1 3 13 13 C 1.46841 * 110.99674 * 179.02710 * 12 2 1 14 14 C 1.53038 * 109.52215 * 185.84367 * 13 12 2 15 15 C 1.53121 * 109.27605 * 300.81966 * 14 13 12 16 16 C 1.53123 * 109.15977 * 57.65309 * 15 14 13 17 17 H 1.08998 * 109.50145 * 62.29106 * 16 15 14 18 18 C 1.53002 * 109.53451 * 182.38022 * 16 15 14 19 19 O 1.42899 * 109.47731 * 294.83048 * 18 16 15 20 20 C 1.46842 * 111.00049 * 303.24137 * 12 2 1 21 21 H 1.08998 * 109.46748 * 54.15317 * 20 12 2 22 22 C 1.53002 * 109.46188 * 294.17290 * 20 12 2 23 23 O 1.42906 * 109.46925 * 66.82281 * 22 20 12 24 24 H 1.09000 * 109.47492 * 299.99716 * 1 2 3 25 25 H 1.09001 * 109.47849 * 59.99929 * 1 2 3 26 26 H 1.09006 * 109.47125 * 179.97438 * 1 2 3 27 27 H 0.97005 * 119.99820 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.46606 * 305.85763 * 13 12 2 29 29 H 1.08996 * 109.46448 * 65.82519 * 13 12 2 30 30 H 1.08998 * 109.50254 * 180.88506 * 14 13 12 31 31 H 1.09000 * 109.53724 * 60.77767 * 14 13 12 32 32 H 1.09005 * 109.52504 * 297.74897 * 15 14 13 33 33 H 1.09002 * 109.52531 * 177.56252 * 15 14 13 34 34 H 1.09007 * 109.46511 * 54.82900 * 18 16 15 35 35 H 1.09003 * 109.47154 * 174.81987 * 18 16 15 36 36 H 0.96698 * 114.00218 * 180.02562 * 19 18 16 37 37 H 1.08997 * 109.47371 * 186.81916 * 22 20 12 38 38 H 1.08997 * 109.47464 * 306.83156 * 22 20 12 39 39 H 0.96696 * 114.00032 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9384 0.8267 -2.6033 8 14 2.3108 -1.1276 -4.0079 9 1 1.8152 -2.5275 -4.0022 10 1 1.8109 -0.4311 -5.2204 11 1 3.7958 -1.1283 -4.0138 12 7 2.0197 -0.6925 1.1995 13 6 3.4874 -0.7322 1.2217 14 6 3.9581 -1.5833 2.4034 15 6 3.4254 -0.9789 3.7055 16 6 1.8975 -0.9041 3.6367 17 1 1.4877 -1.9100 3.5457 18 6 1.3597 -0.2467 4.9094 19 8 1.6429 -1.0823 6.0335 20 6 1.4866 -0.0729 2.4194 21 1 0.3991 -0.0298 2.3595 22 6 2.0461 1.3445 2.5575 23 8 1.5321 2.1641 1.5058 24 1 -0.3634 0.5138 0.8900 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 0.7004 1.1556 -3.4844 28 1 3.8531 -1.1679 0.2920 29 1 3.8766 0.2805 1.3257 30 1 5.0476 -1.5997 2.4289 31 1 3.5812 -2.6001 2.2933 32 1 3.8337 0.0234 3.8357 33 1 3.7220 -1.6060 4.5463 34 1 1.8384 0.7228 5.0476 35 1 0.2819 -0.1103 4.8203 36 1 1.3292 -0.7273 6.8764 37 1 1.7489 1.7602 3.5203 38 1 3.1338 1.3135 2.4952 39 1 1.8452 3.0786 1.5310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709782496.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:52 Heat of formation + Delta-G solvation = -119.175744 kcal Electronic energy + Delta-G solvation = -19433.501177 eV Core-core repulsion = 16568.081930 eV Total energy + Delta-G solvation = -2865.419247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06502 -37.85014 -36.90817 -35.87591 -33.68471 -32.77399 -30.34045 -27.78369 -27.04339 -26.09084 -24.23392 -22.54865 -21.44215 -19.41929 -18.82579 -18.16994 -17.86561 -17.27222 -16.46854 -16.18849 -15.56375 -15.28374 -15.10060 -14.48613 -14.41700 -14.03284 -13.81685 -13.55341 -13.28857 -13.05505 -12.85201 -12.74865 -12.54120 -12.18699 -11.99094 -11.97198 -11.82116 -11.55549 -11.27867 -11.05239 -10.92433 -10.67076 -10.40342 -10.35000 -8.62338 -8.01570 -6.12229 1.41506 1.43674 1.50848 2.45552 3.15783 3.22770 3.33499 3.79464 3.86419 3.99496 4.16007 4.22561 4.34536 4.37941 4.51520 4.59708 4.65370 4.71792 4.80831 4.86501 4.99586 5.05613 5.12823 5.17404 5.23426 5.25642 5.42653 5.45833 5.53790 5.68780 5.90570 6.00599 6.40232 6.57535 6.90922 6.96593 6.98999 7.09813 7.54977 9.02545 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.034101 B = 0.007271 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.882824 B = 3850.131968 C = 4223.804619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.215 3.785 3 H 0.020 0.980 4 C -0.521 4.521 5 H 0.049 0.951 6 C 0.011 3.989 7 N -0.917 5.917 8 Si 0.953 3.047 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.537 5.537 13 C 0.062 3.938 14 C -0.112 4.112 15 C -0.101 4.101 16 C -0.073 4.073 17 H 0.067 0.933 18 C 0.086 3.914 19 O -0.586 6.586 20 C 0.086 3.914 21 H 0.069 0.931 22 C 0.043 3.957 23 O -0.572 6.572 24 H 0.027 0.973 25 H 0.053 0.947 26 H 0.011 0.989 27 H 0.258 0.742 28 H 0.055 0.945 29 H 0.019 0.981 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.062 0.938 35 H 0.050 0.950 36 H 0.397 0.603 37 H 0.067 0.933 38 H 0.047 0.953 39 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.498 1.244 15.575 16.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 H 0.037 0.963 4 C -0.560 4.560 5 H 0.067 0.933 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.261 5.261 13 C -0.066 4.066 14 C -0.150 4.150 15 C -0.138 4.138 16 C -0.092 4.092 17 H 0.086 0.914 18 C 0.008 3.992 19 O -0.394 6.394 20 C -0.023 4.023 21 H 0.087 0.913 22 C -0.036 4.036 23 O -0.379 6.379 24 H 0.045 0.955 25 H 0.072 0.928 26 H 0.030 0.970 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.247 0.753 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 3.214 -0.059 14.781 15.127 hybrid contribution 0.293 1.312 -0.702 1.516 sum 3.507 1.253 14.079 14.564 Atomic orbital electron populations 1.21566 0.98700 0.97304 0.99296 1.19181 0.91606 0.92818 0.85528 0.96290 1.21548 1.30662 1.11971 0.91792 0.93263 1.25642 0.95664 0.95894 1.01547 1.70054 1.37843 1.24217 1.23558 0.85701 0.78695 0.78627 0.79079 1.20185 1.20943 1.19745 1.62072 1.07972 1.54013 1.02049 1.21946 0.88496 0.97532 0.98672 1.21607 1.00362 0.99141 0.93840 1.21519 0.93860 1.01229 0.97212 1.21030 0.97082 0.99336 0.91726 0.91407 1.22169 0.98867 0.92815 0.85310 1.86425 1.83853 1.50441 1.18659 1.21711 0.99534 0.90321 0.90745 0.91261 1.23101 0.97788 0.92426 0.90316 1.86882 1.73882 1.25559 1.51601 0.95450 0.92790 0.97006 0.93301 0.92687 0.96313 0.90286 0.92423 0.91669 0.90605 0.92007 0.93133 0.75338 0.91466 0.93490 0.77347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 8.42 71.98 0.61 -5.23 16 2 C 0.21 11.30 1.44 44.17 0.06 11.36 16 3 H 0.02 1.12 5.45 -2.39 -0.01 1.11 16 4 C -0.52 -29.98 7.86 25.60 0.20 -29.78 16 5 H 0.05 2.84 6.63 -2.91 -0.02 2.82 16 6 C 0.01 0.62 5.30 84.66 0.45 1.06 16 7 N -0.92 -54.66 11.31 21.45 0.24 -54.42 16 8 Si 0.95 45.39 29.54 68.60 2.03 47.42 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 10 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 N -0.54 -23.64 4.46 -850.44 -3.80 -27.43 16 13 C 0.06 2.46 4.95 86.33 0.43 2.89 16 14 C -0.11 -3.45 6.09 30.65 0.19 -3.27 16 15 C -0.10 -2.70 4.85 30.68 0.15 -2.55 16 16 C -0.07 -2.12 2.36 -10.74 -0.03 -2.14 16 17 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 18 C 0.09 1.89 5.91 71.98 0.43 2.32 16 19 O -0.59 -11.94 13.25 -148.98 -1.97 -13.92 16 20 C 0.09 3.09 2.00 44.94 0.09 3.18 16 21 H 0.07 2.72 5.92 -2.39 -0.01 2.70 16 22 C 0.04 1.33 5.42 71.98 0.39 1.72 16 23 O -0.57 -21.18 9.81 -148.98 -1.46 -22.64 16 24 H 0.03 1.30 5.81 -2.39 -0.01 1.29 16 25 H 0.05 3.13 6.06 -2.39 -0.01 3.12 16 26 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 27 H 0.26 14.68 8.31 -92.70 -0.77 13.91 16 28 H 0.05 2.47 6.23 -2.39 -0.01 2.46 16 29 H 0.02 0.75 6.05 -2.39 -0.01 0.73 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.06 1.60 6.72 -2.38 -0.02 1.59 16 33 H 0.08 1.89 7.90 -2.39 -0.02 1.87 16 34 H 0.06 1.14 6.54 -2.38 -0.02 1.13 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.40 4.02 9.12 -74.06 -0.68 3.34 16 37 H 0.07 1.63 6.17 -2.39 -0.01 1.62 16 38 H 0.05 1.47 4.81 -2.39 -0.01 1.45 16 39 H 0.38 10.36 9.12 -74.06 -0.68 9.68 16 Total: -1.00 -69.19 285.85 -2.28 -71.47 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.28 Total: 19.97 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 2.96 Total: -20.45 kcal Atomic # 7 Polarization: -78.30 SS G_CDS: -3.55 Total: -81.85 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -3.44 Total: -36.56 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -69.19 -2.28 -71.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709782496.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.710 kcal (2) G-P(sol) polarization free energy of solvation -69.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds