Wall clock time and date at job start Mon Mar 30 2020 04:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99847 * 2 1 4 4 C 1.53001 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.85049 * 43.79769 * 4 3 2 6 6 C 1.53782 * 113.61355 * 174.99862 * 4 3 2 7 7 C 1.53781 * 87.07896 * 139.97873 * 6 4 3 8 8 H 1.09000 * 113.61482 * 89.20036 * 7 6 4 9 9 N 1.46907 * 113.61597 * 220.01654 * 7 6 4 10 10 C 1.46897 * 110.99994 * 205.00054 * 9 7 6 11 11 C 1.53006 * 109.46573 * 179.97438 * 10 9 7 12 12 O 1.42901 * 109.46804 * 65.00294 * 11 10 9 13 13 C 1.42899 * 113.99607 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46876 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.53775 * 87.08557 * 334.56542 * 7 6 4 23 23 H 1.08992 * 109.47357 * 300.00450 * 1 2 3 24 24 H 1.08998 * 109.47294 * 60.00682 * 1 2 3 25 25 H 1.09009 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47109 * 59.99859 * 3 2 1 27 27 H 1.09003 * 109.46924 * 299.99630 * 3 2 1 28 28 H 1.08995 * 113.61470 * 25.43408 * 6 4 3 29 29 H 1.08994 * 113.68927 * 254.53313 * 6 4 3 30 30 H 1.00896 * 110.99558 * 81.04370 * 9 7 6 31 31 H 1.08997 * 109.47142 * 60.00213 * 10 9 7 32 32 H 1.08995 * 109.47294 * 299.99820 * 10 9 7 33 33 H 1.08995 * 109.47721 * 304.99997 * 11 10 9 34 34 H 1.09001 * 109.46499 * 184.99873 * 11 10 9 35 35 H 1.09004 * 109.47206 * 60.00168 * 13 12 11 36 36 H 1.08994 * 109.47548 * 299.99825 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08999 * 113.62017 * 139.97660 * 22 7 6 39 39 H 1.08994 * 113.61478 * 270.89007 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4287 -0.6961 6 6 4.2602 2.5354 -0.1235 7 6 5.2678 1.9993 0.9072 8 1 6.1076 1.4668 0.4607 9 7 5.6883 3.0015 1.8955 10 6 7.0098 2.6745 2.4474 11 6 7.4129 3.7388 3.4700 12 8 6.5170 3.6940 4.5824 13 6 6.8071 4.6531 5.6012 14 6 5.8052 4.5174 6.7188 15 1 5.0252 3.7729 6.6573 16 6 5.8882 5.3395 7.8226 17 7 6.8382 6.2458 7.8976 18 14 4.6509 5.1661 9.2113 19 1 5.1599 4.1908 10.2088 20 1 4.4525 6.4847 9.8649 21 1 3.3569 4.6851 8.6643 22 6 4.1452 1.0747 1.4069 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.6738 3.3801 0.2378 29 1 4.6944 2.7114 -1.1077 30 1 5.0027 3.0949 2.6298 31 1 7.7436 2.6486 1.6419 32 1 6.9694 1.6998 2.9336 33 1 7.3673 4.7241 3.0062 34 1 8.4291 3.5457 3.8138 35 1 6.7492 5.6576 5.1818 36 1 7.8106 4.4787 5.9893 37 1 6.8963 6.8244 8.6740 38 1 4.4860 0.0702 1.6577 39 1 3.5272 1.5201 2.1864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000714486921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:03 Heat of formation + Delta-G solvation = -84.407024 kcal Electronic energy + Delta-G solvation = -17250.825102 eV Core-core repulsion = 14386.913540 eV Total energy + Delta-G solvation = -2863.911562 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58252 -37.62325 -36.79434 -34.03863 -32.59722 -29.43187 -27.84359 -26.61550 -25.79120 -25.56627 -22.36855 -21.89089 -21.26188 -19.55482 -16.62442 -16.42975 -16.15145 -15.83992 -15.74536 -15.39623 -14.90311 -14.45612 -14.25556 -13.70991 -13.37309 -12.91398 -12.67133 -12.43702 -12.12277 -11.84650 -11.68164 -11.52912 -11.34884 -10.95661 -10.80812 -10.73422 -10.64079 -10.47229 -10.27284 -9.96256 -9.78348 -9.10211 -8.81722 -8.16359 -8.10545 -6.10622 -4.12386 3.30200 3.35194 3.40327 3.54294 4.34820 4.39105 4.50591 4.57902 4.86824 4.90834 5.03151 5.04432 5.10577 5.25829 5.26447 5.31870 5.37177 5.43910 5.53732 5.63983 5.74682 5.78582 5.80176 5.98614 6.08173 6.13249 6.24327 6.31435 6.42497 6.97272 7.12380 7.30955 7.44840 7.69161 7.79300 8.15927 8.58642 9.00851 9.52438 11.00932 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.004073 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.337086 B = 6873.148582 C = 7939.121162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.071 3.929 4 C -0.110 4.110 5 H 0.095 0.905 6 C -0.119 4.119 7 C 0.067 3.933 8 H 0.093 0.907 9 N -0.677 5.677 10 C 0.065 3.935 11 C 0.061 3.939 12 O -0.399 6.399 13 C 0.197 3.803 14 C -0.515 4.515 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.898 5.898 18 Si 0.908 3.092 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.160 4.160 23 H 0.041 0.959 24 H 0.039 0.961 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.357 0.643 31 H 0.074 0.926 32 H 0.034 0.966 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.006 0.994 36 H 0.004 0.996 37 H 0.264 0.736 38 H 0.066 0.934 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 -9.519 -16.739 20.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.311 6.311 3 C -0.005 4.005 4 C -0.129 4.129 5 H 0.114 0.886 6 C -0.158 4.158 7 C -0.044 4.044 8 H 0.111 0.889 9 N -0.309 5.309 10 C -0.064 4.064 11 C -0.017 4.017 12 O -0.320 6.320 13 C 0.123 3.877 14 C -0.553 4.553 15 H 0.084 0.916 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.199 4.199 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.087 0.913 30 H 0.178 0.822 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.024 0.976 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.726 -9.212 -17.049 20.513 hybrid contribution -0.751 -0.291 1.363 1.584 sum -7.478 -9.503 -15.685 19.806 Atomic orbital electron populations 1.22726 0.81312 1.02588 0.99943 1.87882 1.19458 1.28363 1.95405 1.22587 0.93382 0.84400 1.00149 1.22401 0.92545 0.99202 0.98702 0.88632 1.23075 0.97234 0.96048 0.99397 1.22948 0.95387 0.91727 0.94363 0.88904 1.60428 1.05093 1.46153 1.19177 1.21983 0.91315 0.97192 0.95898 1.22312 0.93195 0.97948 0.88232 1.87785 1.53493 1.60459 1.30213 1.20171 0.96185 0.86601 0.84759 1.21059 1.13524 1.18738 1.01977 0.91638 1.24953 0.96178 0.94969 0.98427 1.69967 1.32689 1.20982 1.30118 0.86339 0.81257 0.77394 0.81509 1.20493 1.21065 1.19654 1.23755 0.98707 1.00911 0.96511 0.94026 0.94254 0.89799 0.92955 0.93367 0.89427 0.91274 0.82190 0.90768 0.94719 0.93589 0.94208 0.97625 0.97839 0.92657 0.91534 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.48 10.70 -35.23 -0.38 -4.86 16 3 C 0.07 0.73 5.77 37.16 0.21 0.94 16 4 C -0.11 -1.13 4.01 -89.80 -0.36 -1.49 16 5 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 6 C -0.12 -1.25 7.44 -25.92 -0.19 -1.44 16 7 C 0.07 0.80 4.18 -66.90 -0.28 0.52 16 8 H 0.09 1.03 7.87 -51.93 -0.41 0.62 16 9 N -0.68 -10.10 6.62 -105.87 -0.70 -10.80 16 10 C 0.07 1.00 5.95 -3.82 -0.02 0.98 16 11 C 0.06 1.15 6.28 37.16 0.23 1.39 16 12 O -0.40 -9.60 9.85 -35.23 -0.35 -9.95 16 13 C 0.20 5.46 5.69 36.01 0.20 5.66 16 14 C -0.51 -15.23 9.43 -34.44 -0.32 -15.55 16 15 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 18 Si 0.91 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.16 -1.88 7.25 -25.92 -0.19 -2.07 16 23 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 26 H 0.05 0.54 7.84 -51.93 -0.41 0.13 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.36 5.95 7.75 -39.29 -0.30 5.64 16 31 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 36 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 LS Contribution 324.89 15.07 4.90 4.90 Total: -1.00 -31.29 324.89 -7.49 -38.77 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.97 Total: -0.45 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 0.30 Total: -8.17 kcal Atomic # 7 Polarization: -37.17 SS G_CDS: 0.04 Total: -37.13 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.72 Total: -14.81 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.29 -7.49 -38.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714486921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.633 kcal (2) G-P(sol) polarization free energy of solvation -31.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds