Wall clock time and date at job start Mon Mar 30 2020 04:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99847 * 2 1 4 4 C 1.53001 * 109.47098 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.85049 * 43.79769 * 4 3 2 6 6 C 1.53782 * 113.61355 * 174.99862 * 4 3 2 7 7 C 1.53781 * 87.07896 * 139.97873 * 6 4 3 8 8 H 1.09000 * 113.61482 * 89.20036 * 7 6 4 9 9 N 1.46907 * 113.61597 * 220.01654 * 7 6 4 10 10 C 1.46897 * 110.99994 * 205.00054 * 9 7 6 11 11 C 1.53006 * 109.46573 * 179.97438 * 10 9 7 12 12 O 1.42901 * 109.46804 * 65.00294 * 11 10 9 13 13 C 1.42899 * 113.99607 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46876 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.53775 * 87.08557 * 334.56542 * 7 6 4 23 23 H 1.08992 * 109.47357 * 300.00450 * 1 2 3 24 24 H 1.08998 * 109.47294 * 60.00682 * 1 2 3 25 25 H 1.09009 * 109.46984 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47109 * 59.99859 * 3 2 1 27 27 H 1.09003 * 109.46924 * 299.99630 * 3 2 1 28 28 H 1.08995 * 113.61470 * 25.43408 * 6 4 3 29 29 H 1.08994 * 113.68927 * 254.53313 * 6 4 3 30 30 H 1.00896 * 110.99558 * 81.04370 * 9 7 6 31 31 H 1.08997 * 109.47142 * 60.00213 * 10 9 7 32 32 H 1.08995 * 109.47294 * 299.99820 * 10 9 7 33 33 H 1.08995 * 109.47721 * 304.99997 * 11 10 9 34 34 H 1.09001 * 109.46499 * 184.99873 * 11 10 9 35 35 H 1.09004 * 109.47206 * 60.00168 * 13 12 11 36 36 H 1.08994 * 109.47548 * 299.99825 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08999 * 113.62017 * 139.97660 * 22 7 6 39 39 H 1.08994 * 113.61478 * 270.89007 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8998 0.4287 -0.6961 6 6 4.2602 2.5354 -0.1235 7 6 5.2678 1.9993 0.9072 8 1 6.1076 1.4668 0.4607 9 7 5.6883 3.0015 1.8955 10 6 7.0098 2.6745 2.4474 11 6 7.4129 3.7388 3.4700 12 8 6.5170 3.6940 4.5824 13 6 6.8071 4.6531 5.6012 14 6 5.8052 4.5174 6.7188 15 1 5.0252 3.7729 6.6573 16 6 5.8882 5.3395 7.8226 17 7 6.8382 6.2458 7.8976 18 14 4.6509 5.1661 9.2113 19 1 5.1599 4.1908 10.2088 20 1 4.4525 6.4847 9.8649 21 1 3.3569 4.6851 8.6643 22 6 4.1452 1.0747 1.4069 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.6738 3.3801 0.2378 29 1 4.6944 2.7114 -1.1077 30 1 5.0027 3.0949 2.6298 31 1 7.7436 2.6486 1.6419 32 1 6.9694 1.6998 2.9336 33 1 7.3673 4.7241 3.0062 34 1 8.4291 3.5457 3.8138 35 1 6.7492 5.6576 5.1818 36 1 7.8106 4.4787 5.9893 37 1 6.8963 6.8244 8.6740 38 1 4.4860 0.0702 1.6577 39 1 3.5272 1.5201 2.1864 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000714486921.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:02 Heat of formation + Delta-G solvation = -106.445442 kcal Electronic energy + Delta-G solvation = -17251.780760 eV Core-core repulsion = 14386.913540 eV Total energy + Delta-G solvation = -2864.867219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49903 -38.80428 -38.22802 -35.47135 -34.64328 -30.68564 -29.32586 -28.16866 -26.68554 -26.41883 -24.53410 -23.09000 -22.39596 -20.47388 -18.63806 -17.54289 -17.40090 -17.04606 -16.82329 -16.58972 -16.40929 -16.11137 -15.35946 -15.11419 -14.98286 -14.10893 -13.79707 -13.49954 -13.36155 -13.21807 -13.06697 -12.81603 -12.67849 -12.64064 -12.32763 -12.25324 -11.99725 -11.64942 -11.37364 -11.29200 -11.17521 -10.87145 -10.56787 -10.23505 -9.25189 -8.32856 -6.45426 1.39594 1.42467 1.54488 2.34130 2.78991 3.01017 3.20444 3.30396 3.65571 3.68469 3.99637 4.02617 4.23041 4.33362 4.40686 4.43290 4.50278 4.51997 4.61163 4.62245 4.76066 4.83185 4.83866 4.85039 4.86687 4.90584 4.97187 5.12673 5.17726 5.25784 5.45862 5.53956 5.95066 6.19612 6.25701 6.41557 6.52713 6.81014 7.26588 8.79597 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.004073 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.337086 B = 6873.148582 C = 7939.121162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.070 3.930 4 C -0.100 4.100 5 H 0.104 0.896 6 C -0.111 4.111 7 C 0.063 3.937 8 H 0.108 0.892 9 N -0.686 5.686 10 C 0.075 3.925 11 C 0.053 3.947 12 O -0.409 6.409 13 C 0.211 3.789 14 C -0.548 4.548 15 H 0.062 0.938 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.268 1.268 20 H -0.274 1.274 21 H -0.264 1.264 22 C -0.163 4.163 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.096 0.904 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.344 0.656 31 H 0.106 0.894 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.048 0.952 35 H -0.015 1.015 36 H -0.015 1.015 37 H 0.271 0.729 38 H 0.063 0.937 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.888 -10.216 -17.333 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.007 4.007 4 C -0.118 4.118 5 H 0.122 0.878 6 C -0.149 4.149 7 C -0.047 4.047 8 H 0.126 0.874 9 N -0.316 5.316 10 C -0.054 4.054 11 C -0.024 4.024 12 O -0.329 6.329 13 C 0.136 3.864 14 C -0.586 4.586 15 H 0.080 0.920 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.188 1.188 22 C -0.202 4.202 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.114 0.886 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.163 0.837 31 H 0.124 0.876 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.003 0.997 36 H 0.002 0.998 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.582 -9.921 -17.677 21.643 hybrid contribution -0.446 -0.085 1.472 1.540 sum -8.029 -10.007 -16.205 20.669 Atomic orbital electron populations 1.22906 0.79870 1.03701 1.00672 1.87840 1.21166 1.28930 1.95559 1.22610 0.93246 0.84254 1.00553 1.22341 0.92749 0.99197 0.97551 0.87823 1.23003 0.96538 0.95795 0.99593 1.23117 0.96121 0.91437 0.94010 0.87411 1.60495 1.04553 1.47579 1.18998 1.21957 0.92426 0.95373 0.95677 1.22636 0.92986 0.99389 0.87432 1.87751 1.55007 1.59258 1.30891 1.19789 0.94882 0.86295 0.85409 1.21394 1.14267 1.19551 1.03393 0.91974 1.25979 0.98190 0.94055 1.01065 1.70075 1.34230 1.21491 1.31226 0.85169 0.78481 0.77987 0.77685 1.19307 1.19892 1.18844 1.23721 0.98781 1.00533 0.97160 0.93906 0.92898 0.88598 0.93613 0.91887 0.90208 0.89635 0.83735 0.87622 0.94975 0.93867 0.93403 0.99749 0.99758 0.92023 0.91796 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 11.01 113.37 1.25 1.62 16 2 O -0.42 -9.00 10.70 -148.98 -1.59 -10.59 16 3 C 0.07 1.34 5.77 71.98 0.42 1.76 16 4 C -0.10 -1.90 4.01 -10.26 -0.04 -1.94 16 5 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.11 -2.13 7.44 31.12 0.23 -1.90 16 7 C 0.06 1.42 4.18 45.44 0.19 1.61 16 8 H 0.11 2.12 7.87 -2.39 -0.02 2.10 16 9 N -0.69 -19.97 6.62 -488.85 -3.24 -23.21 16 10 C 0.07 2.20 5.95 86.31 0.51 2.71 16 11 C 0.05 1.99 6.28 71.98 0.45 2.45 16 12 O -0.41 -20.09 9.85 -148.98 -1.47 -21.56 16 13 C 0.21 12.08 5.69 71.24 0.41 12.48 16 14 C -0.55 -33.00 9.43 25.60 0.24 -32.76 16 15 H 0.06 3.68 7.81 -2.91 -0.02 3.66 16 16 C 0.01 0.32 5.46 84.66 0.46 0.79 16 17 N -0.93 -56.52 13.29 21.45 0.28 -56.23 16 18 Si 0.98 44.62 29.54 68.60 2.03 46.65 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 22 C -0.16 -3.73 7.25 31.12 0.23 -3.50 16 23 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 26 H 0.05 0.93 7.84 -2.39 -0.02 0.91 16 27 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.68 8.10 -2.39 -0.02 1.66 16 29 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.34 11.57 7.75 -89.70 -0.70 10.88 16 31 H 0.11 2.47 8.13 -2.39 -0.02 2.45 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 36 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 37 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.83 7.58 -2.39 -0.02 1.81 16 Total: -1.00 -66.91 324.89 0.66 -66.24 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.30 Total: 15.40 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 4.34 Total: -16.69 kcal Atomic # 7 Polarization: -76.49 SS G_CDS: -2.95 Total: -79.44 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -3.06 Total: -32.15 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.91 0.66 -66.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000714486921.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.203 kcal (2) G-P(sol) polarization free energy of solvation -66.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds