Wall clock time and date at job start Mon Mar 30 2020 04:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99759 * 2 1 4 4 H 1.08998 * 112.85389 * 18.79715 * 3 2 1 5 5 C 1.53782 * 113.61321 * 247.49299 * 3 2 1 6 6 C 1.53952 * 87.11378 * 220.09059 * 5 3 2 7 7 C 1.53784 * 87.02070 * 25.36306 * 6 5 3 8 8 H 1.08997 * 113.61847 * 89.22843 * 7 6 5 9 9 N 1.46903 * 113.61646 * 220.05155 * 7 6 5 10 10 C 1.46899 * 110.99548 * 287.00913 * 9 7 6 11 11 C 1.46900 * 110.99937 * 163.05241 * 9 7 6 12 12 C 1.53001 * 109.46874 * 189.99790 * 11 9 7 13 13 O 1.42897 * 109.47273 * 65.00116 * 12 11 9 14 14 C 1.42899 * 114.00381 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47149 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00342 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99739 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99864 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47409 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47289 * 120.00240 * 19 17 15 22 22 H 1.48501 * 109.47010 * 240.00082 * 19 17 15 23 23 H 1.09004 * 109.47244 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47827 * 300.00417 * 1 2 3 25 25 H 1.09003 * 109.47279 * 60.00578 * 1 2 3 26 26 H 1.09001 * 113.61562 * 334.56602 * 5 3 2 27 27 H 1.09000 * 113.61692 * 105.47100 * 5 3 2 28 28 H 1.08998 * 113.61572 * 270.84546 * 6 5 3 29 29 H 1.09002 * 113.66788 * 139.88713 * 6 5 3 30 30 H 1.08995 * 109.47565 * 53.68369 * 10 9 7 31 31 H 1.09000 * 109.47060 * 293.68366 * 10 9 7 32 32 H 1.09001 * 109.46772 * 173.68203 * 10 9 7 33 33 H 1.08991 * 109.47165 * 309.99693 * 11 9 7 34 34 H 1.09000 * 109.46906 * 70.00405 * 11 9 7 35 35 H 1.08995 * 109.47000 * 185.00095 * 12 11 9 36 36 H 1.08999 * 109.47063 * 304.99991 * 12 11 9 37 37 H 1.09006 * 109.46673 * 300.00518 * 14 13 12 38 38 H 1.09003 * 109.47138 * 59.99704 * 14 13 12 39 39 H 0.97000 * 119.99601 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 0.3236 5 6 2.7534 1.6488 -1.3017 6 6 3.8252 2.3175 -0.4218 7 6 3.3755 1.3720 0.7046 8 1 3.9081 0.4210 0.7152 9 7 3.3253 2.0125 2.0257 10 6 4.6778 2.2470 2.5486 11 6 2.5276 1.2154 2.9672 12 6 2.2890 2.0232 4.2445 13 8 1.4864 3.1662 3.9423 14 6 1.2036 3.9933 5.0728 15 6 0.3554 5.1615 4.6409 16 1 0.0619 5.2626 3.6065 17 6 -0.0461 6.1015 5.5664 18 7 0.3109 5.9781 6.8261 19 14 -1.0982 7.5492 5.0312 20 1 -1.3611 7.4577 3.5725 21 1 -2.3864 7.5246 5.7693 22 1 -0.3829 8.8167 5.3261 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 3.1167 0.7740 -1.8409 27 1 2.2141 2.3476 -1.9412 28 1 3.6263 3.3689 -0.2146 29 1 4.8451 2.1375 -0.7617 30 1 5.2601 2.8033 1.8140 31 1 5.1616 1.2906 2.7469 32 1 4.6154 2.8212 3.4730 33 1 1.5698 0.9656 2.5110 34 1 3.0637 0.2985 3.2120 35 1 1.7743 1.4013 4.9768 36 1 3.2458 2.3487 4.6526 37 1 0.6667 3.4123 5.8227 38 1 2.1381 4.3597 5.4977 39 1 0.0282 6.6391 7.4772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724163438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:43 Heat of formation + Delta-G solvation = -67.525265 kcal Electronic energy + Delta-G solvation = -18199.430263 eV Core-core repulsion = 15336.250749 eV Total energy + Delta-G solvation = -2863.179514 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.75766 -37.19367 -36.21295 -34.59100 -32.61567 -29.22270 -27.16805 -26.77486 -26.28353 -24.37705 -23.18643 -22.23056 -20.71055 -19.50562 -17.02102 -16.40036 -16.26984 -15.62538 -15.20586 -15.04001 -14.53100 -14.35070 -13.98089 -13.73470 -13.11898 -12.97951 -12.71616 -12.09375 -11.98607 -11.85936 -11.61087 -11.55176 -11.15625 -11.07115 -10.89976 -10.76518 -10.63340 -10.31646 -10.28812 -9.91977 -9.44360 -9.02486 -8.75117 -8.11029 -8.02990 -6.06760 -4.07465 3.31370 3.37694 3.44441 3.71874 4.24273 4.39002 4.57785 4.64856 4.80996 4.94860 5.04378 5.29819 5.33695 5.41068 5.44141 5.53483 5.57356 5.63931 5.69712 5.77967 5.78352 5.79824 5.87966 6.01258 6.11822 6.14902 6.25336 6.30600 6.40653 7.15711 7.18133 7.30988 7.40155 7.49643 7.85359 8.22227 8.68041 9.07905 9.57296 11.05053 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.005281 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.894966 B = 5300.683415 C = 5599.601638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.383 6.383 3 C 0.071 3.929 4 H 0.103 0.897 5 C -0.155 4.155 6 C -0.126 4.126 7 C 0.058 3.942 8 H 0.066 0.934 9 N -0.517 5.517 10 C 0.025 3.975 11 C 0.063 3.937 12 C 0.066 3.934 13 O -0.380 6.380 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.081 0.919 24 H 0.047 0.953 25 H 0.040 0.960 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.036 0.964 37 H 0.001 0.999 38 H 0.003 0.997 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.744 -10.719 -12.851 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.302 6.302 3 C 0.013 3.987 4 H 0.120 0.880 5 C -0.193 4.193 6 C -0.164 4.164 7 C -0.051 4.051 8 H 0.084 0.916 9 N -0.242 5.242 10 C -0.123 4.123 11 C -0.065 4.065 12 C -0.012 4.012 13 O -0.300 6.300 14 C 0.119 3.881 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.531 -10.300 -12.909 17.416 hybrid contribution -0.218 0.125 0.404 0.476 sum 5.313 -10.175 -12.504 16.974 Atomic orbital electron populations 1.22785 0.81154 1.02339 1.00423 1.87877 1.19762 1.27977 1.94588 1.23912 0.94013 0.85372 0.95371 0.87951 1.23333 0.98238 1.00788 0.96970 1.22779 0.98386 1.00128 0.95072 1.23501 0.96164 0.96186 0.89209 0.91582 1.62163 1.13425 1.46941 1.01637 1.22374 0.89064 0.99555 1.01280 1.22105 0.98081 0.93197 0.93128 1.22268 0.94815 0.89506 0.94598 1.87929 1.69924 1.35906 1.36221 1.20171 0.94932 0.88921 0.84044 1.21100 1.31180 1.06667 0.95759 0.91530 1.24951 0.96582 0.98357 0.94714 1.69978 1.46147 1.36102 1.01755 0.86308 0.79758 0.81716 0.78872 1.19496 1.20913 1.20884 0.90060 0.93396 0.94181 0.89672 0.90899 0.88611 0.91159 0.91597 0.96299 0.90726 0.90295 0.94449 0.94452 0.94547 0.98074 0.97960 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.85 101.05 1.10 1.43 16 2 O -0.38 -5.21 10.67 -35.23 -0.38 -5.59 16 3 C 0.07 0.96 3.03 -25.91 -0.08 0.88 16 4 H 0.10 1.54 7.87 -51.93 -0.41 1.13 16 5 C -0.15 -1.71 7.92 -25.83 -0.20 -1.91 16 6 C -0.13 -1.44 7.23 -25.83 -0.19 -1.63 16 7 C 0.06 0.78 3.00 -66.89 -0.20 0.58 16 8 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 9 N -0.52 -8.15 4.65 -233.91 -1.09 -9.24 16 10 C 0.03 0.35 9.23 60.06 0.55 0.91 16 11 C 0.06 1.02 5.27 -3.82 -0.02 1.00 16 12 C 0.07 1.29 5.99 37.16 0.22 1.51 16 13 O -0.38 -9.44 10.27 -35.23 -0.36 -9.80 16 14 C 0.19 5.44 5.69 36.00 0.20 5.65 16 15 C -0.51 -15.24 9.43 -34.44 -0.32 -15.57 16 16 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 17 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 19 Si 0.91 22.11 29.54 -169.99 -5.02 17.09 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.82 7.60 -51.93 -0.39 0.43 16 31 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 32 H 0.07 1.14 6.48 -51.93 -0.34 0.80 16 33 H 0.08 1.34 7.16 -51.93 -0.37 0.97 16 34 H 0.04 0.54 8.10 -51.93 -0.42 0.12 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.04 0.69 6.38 -51.93 -0.33 0.36 16 37 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 38 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 320.24 15.07 4.83 4.83 Total: -1.00 -31.99 320.24 -7.20 -39.19 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -6.88 Total: -4.24 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 0.97 Total: -5.66 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.35 Total: -35.82 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.74 Total: -15.39 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.99 -7.20 -39.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724163438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.334 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds