Wall clock time and date at job start Mon Mar 30 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99759 * 2 1 4 4 H 1.08998 * 112.85389 * 18.79715 * 3 2 1 5 5 C 1.53782 * 113.61321 * 247.49299 * 3 2 1 6 6 C 1.53952 * 87.11378 * 220.09059 * 5 3 2 7 7 C 1.53784 * 87.02070 * 25.36306 * 6 5 3 8 8 H 1.08997 * 113.61847 * 89.22843 * 7 6 5 9 9 N 1.46903 * 113.61646 * 220.05155 * 7 6 5 10 10 C 1.46899 * 110.99548 * 287.00913 * 9 7 6 11 11 C 1.46900 * 110.99937 * 163.05241 * 9 7 6 12 12 C 1.53001 * 109.46874 * 189.99790 * 11 9 7 13 13 O 1.42897 * 109.47273 * 65.00116 * 12 11 9 14 14 C 1.42899 * 114.00381 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47149 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00342 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99758 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99739 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99864 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47409 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47289 * 120.00240 * 19 17 15 22 22 H 1.48501 * 109.47010 * 240.00082 * 19 17 15 23 23 H 1.09004 * 109.47244 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47827 * 300.00417 * 1 2 3 25 25 H 1.09003 * 109.47279 * 60.00578 * 1 2 3 26 26 H 1.09001 * 113.61562 * 334.56602 * 5 3 2 27 27 H 1.09000 * 113.61692 * 105.47100 * 5 3 2 28 28 H 1.08998 * 113.61572 * 270.84546 * 6 5 3 29 29 H 1.09002 * 113.66788 * 139.88713 * 6 5 3 30 30 H 1.08995 * 109.47565 * 53.68369 * 10 9 7 31 31 H 1.09000 * 109.47060 * 293.68366 * 10 9 7 32 32 H 1.09001 * 109.46772 * 173.68203 * 10 9 7 33 33 H 1.08991 * 109.47165 * 309.99693 * 11 9 7 34 34 H 1.09000 * 109.46906 * 70.00405 * 11 9 7 35 35 H 1.08995 * 109.47000 * 185.00095 * 12 11 9 36 36 H 1.08999 * 109.47063 * 304.99991 * 12 11 9 37 37 H 1.09006 * 109.46673 * 300.00518 * 14 13 12 38 38 H 1.09003 * 109.47138 * 59.99704 * 14 13 12 39 39 H 0.97000 * 119.99601 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3136 2.0789 0.3236 5 6 2.7534 1.6488 -1.3017 6 6 3.8252 2.3175 -0.4218 7 6 3.3755 1.3720 0.7046 8 1 3.9081 0.4210 0.7152 9 7 3.3253 2.0125 2.0257 10 6 4.6778 2.2470 2.5486 11 6 2.5276 1.2154 2.9672 12 6 2.2890 2.0232 4.2445 13 8 1.4864 3.1662 3.9423 14 6 1.2036 3.9933 5.0728 15 6 0.3554 5.1615 4.6409 16 1 0.0619 5.2626 3.6065 17 6 -0.0461 6.1015 5.5664 18 7 0.3109 5.9781 6.8261 19 14 -1.0982 7.5492 5.0312 20 1 -1.3611 7.4577 3.5725 21 1 -2.3864 7.5246 5.7693 22 1 -0.3829 8.8167 5.3261 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3635 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 3.1167 0.7740 -1.8409 27 1 2.2141 2.3476 -1.9412 28 1 3.6263 3.3689 -0.2146 29 1 4.8451 2.1375 -0.7617 30 1 5.2601 2.8033 1.8140 31 1 5.1616 1.2906 2.7469 32 1 4.6154 2.8212 3.4730 33 1 1.5698 0.9656 2.5110 34 1 3.0637 0.2985 3.2120 35 1 1.7743 1.4013 4.9768 36 1 3.2458 2.3487 4.6526 37 1 0.6667 3.4123 5.8227 38 1 2.1381 4.3597 5.4977 39 1 0.0282 6.6391 7.4772 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724163438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:42 Heat of formation + Delta-G solvation = -90.114060 kcal Electronic energy + Delta-G solvation = -18200.409787 eV Core-core repulsion = 15336.250749 eV Total energy + Delta-G solvation = -2864.159038 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79954 -38.77529 -37.53027 -35.85219 -34.80750 -30.82142 -28.91164 -27.99673 -27.42782 -25.39670 -24.55461 -24.25320 -22.04950 -20.51978 -18.61601 -18.04677 -17.51518 -17.43048 -16.50992 -16.39855 -16.04860 -15.73989 -15.49428 -15.03211 -14.80033 -14.03953 -13.87354 -13.59666 -13.53244 -13.18784 -12.86876 -12.77474 -12.71088 -12.63592 -12.50446 -12.22515 -12.08705 -11.90011 -11.47133 -11.29859 -11.22778 -10.85619 -10.43812 -10.18235 -9.22136 -8.31683 -6.43560 1.39618 1.41269 1.56057 2.35227 2.71846 3.02020 3.10840 3.22587 3.60563 3.69119 3.86630 4.03478 4.14799 4.21321 4.43200 4.45902 4.51291 4.53688 4.57229 4.60509 4.66125 4.72291 4.81210 4.85055 4.90722 4.96740 5.03495 5.05934 5.18994 5.25039 5.35960 5.56010 5.97473 6.05040 6.17619 6.34607 6.57048 6.86200 7.28700 8.81090 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.023867 B = 0.005281 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.894966 B = 5300.683415 C = 5599.601638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.064 3.936 4 H 0.078 0.922 5 C -0.141 4.141 6 C -0.118 4.118 7 C 0.056 3.944 8 H 0.074 0.926 9 N -0.542 5.542 10 C 0.027 3.973 11 C 0.074 3.926 12 C 0.058 3.942 13 O -0.394 6.394 14 C 0.209 3.791 15 C -0.544 4.544 16 H 0.060 0.940 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.983 3.017 20 H -0.265 1.265 21 H -0.271 1.271 22 H -0.271 1.271 23 H 0.101 0.899 24 H 0.032 0.968 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.044 0.956 36 H 0.041 0.959 37 H -0.018 1.018 38 H -0.018 1.018 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.890 -10.686 -14.309 18.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.005 3.995 4 H 0.096 0.904 5 C -0.179 4.179 6 C -0.156 4.156 7 C -0.053 4.053 8 H 0.091 0.909 9 N -0.267 5.267 10 C -0.120 4.120 11 C -0.054 4.054 12 C -0.019 4.019 13 O -0.313 6.313 14 C 0.134 3.866 15 C -0.581 4.581 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.196 1.196 23 H 0.119 0.881 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.116 0.884 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.000 1.000 38 H 0.000 1.000 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.691 -10.288 -14.372 18.569 hybrid contribution -0.228 0.034 0.885 0.915 sum 5.463 -10.254 -13.487 17.801 Atomic orbital electron populations 1.22899 0.80201 1.03614 1.00230 1.87847 1.20857 1.27997 1.94743 1.23932 0.93666 0.84793 0.97076 0.90422 1.23282 0.97380 1.01274 0.96006 1.22737 0.99811 0.98900 0.94153 1.23625 0.96491 0.96864 0.88280 0.90880 1.62129 1.14369 1.47633 1.02550 1.22355 0.88561 1.00388 1.00734 1.21947 0.98325 0.93402 0.91756 1.22579 0.94237 0.88156 0.96918 1.87891 1.71015 1.37328 1.35078 1.19792 0.93443 0.88925 0.84425 1.21392 1.32707 1.08195 0.95834 0.92199 1.25964 0.97487 1.01259 0.94525 1.70081 1.46751 1.37347 1.02949 0.85141 0.77988 0.77563 0.78742 1.18865 1.19571 1.19598 0.88079 0.94927 0.93056 0.88354 0.90022 0.89982 0.88906 0.90126 0.94483 0.92796 0.91261 0.92002 0.93811 0.94072 0.99983 1.00016 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.85 113.37 1.23 1.81 16 2 O -0.40 -10.35 10.67 -148.98 -1.59 -11.94 16 3 C 0.06 1.65 3.03 31.12 0.09 1.75 16 4 H 0.08 2.39 7.87 -2.39 -0.02 2.37 16 5 C -0.14 -2.82 7.92 31.18 0.25 -2.58 16 6 C -0.12 -2.49 7.23 31.18 0.23 -2.26 16 7 C 0.06 1.42 3.00 45.44 0.14 1.55 16 8 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 9 N -0.54 -16.76 4.65 -893.94 -4.16 -20.91 16 10 C 0.03 0.73 9.23 127.69 1.18 1.91 16 11 C 0.07 2.38 5.27 86.30 0.45 2.84 16 12 C 0.06 2.31 5.99 71.98 0.43 2.74 16 13 O -0.39 -20.14 10.27 -148.98 -1.53 -21.67 16 14 C 0.21 12.19 5.69 71.23 0.41 12.60 16 15 C -0.54 -33.27 9.43 25.60 0.24 -33.03 16 16 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 17 C 0.01 0.34 5.46 84.66 0.46 0.81 16 18 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 19 Si 0.98 45.10 29.54 68.60 2.03 47.13 16 20 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.03 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.88 7.60 -2.39 -0.02 1.87 16 31 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 32 H 0.05 1.65 6.48 -2.39 -0.02 1.63 16 33 H 0.07 2.37 7.16 -2.39 -0.02 2.35 16 34 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.04 1.58 6.38 -2.39 -0.02 1.57 16 37 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 38 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -68.70 320.24 1.13 -67.57 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 0.99 Total: 8.37 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 5.11 Total: -11.87 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: -3.87 Total: -77.59 kcal Atomic # 8 Polarization: -30.48 SS G_CDS: -3.12 Total: -33.60 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.70 1.13 -67.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724163438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.540 kcal (2) G-P(sol) polarization free energy of solvation -68.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds