Wall clock time and date at job start Mon Mar 30 2020 04:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00097 * 2 1 4 4 H 1.08998 * 112.90514 * 18.75290 * 3 2 1 5 5 C 1.53784 * 113.61422 * 247.49783 * 3 2 1 6 6 C 1.53778 * 87.07895 * 270.88731 * 5 3 2 7 7 C 1.53779 * 87.08568 * 334.56618 * 6 5 3 8 8 H 1.09002 * 113.69208 * 270.88145 * 7 6 5 9 9 N 1.46900 * 113.61513 * 139.98285 * 7 6 5 10 10 C 1.46900 * 110.99727 * 206.46120 * 9 7 6 11 11 C 1.46894 * 110.99613 * 82.50724 * 9 7 6 12 12 C 1.53009 * 109.46764 * 190.00090 * 11 9 7 13 13 O 1.42899 * 109.47113 * 64.99856 * 12 11 9 14 14 C 1.42903 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 H 1.09006 * 109.46818 * 300.00020 * 1 2 3 24 24 H 1.08998 * 109.47603 * 59.99527 * 1 2 3 25 25 H 1.08996 * 109.47603 * 180.02562 * 1 2 3 26 26 H 1.09003 * 113.61144 * 25.43116 * 5 3 2 27 27 H 1.08997 * 113.61444 * 156.25288 * 5 3 2 28 28 H 1.09001 * 113.61193 * 220.01838 * 6 5 3 29 29 H 1.09001 * 113.61989 * 89.11713 * 6 5 3 30 30 H 1.09003 * 109.47021 * 296.04554 * 10 9 7 31 31 H 1.08999 * 109.47780 * 56.04449 * 10 9 7 32 32 H 1.09007 * 109.46838 * 176.04890 * 10 9 7 33 33 H 1.09000 * 109.47283 * 70.00039 * 11 9 7 34 34 H 1.09002 * 109.47562 * 309.99359 * 11 9 7 35 35 H 1.09007 * 109.46516 * 304.99789 * 12 11 9 36 36 H 1.09004 * 109.47113 * 185.00258 * 12 11 9 37 37 H 1.09002 * 109.47382 * 59.99956 * 14 13 12 38 38 H 1.09001 * 109.46938 * 299.99942 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 0.3228 5 6 2.7535 1.6489 -1.3018 6 6 4.0061 1.0329 -0.6565 7 6 3.3756 1.3718 0.7045 8 1 3.6305 2.3667 1.0698 9 7 3.5663 0.3258 1.7181 10 6 2.4938 0.3632 2.7213 11 6 4.8856 0.4425 2.3533 12 6 5.1487 -0.7951 3.2136 13 8 5.2337 -1.9490 2.3749 14 6 5.4783 -3.1657 3.0834 15 6 5.5478 -4.3107 2.1061 16 1 5.4185 -4.1276 1.0496 17 6 5.7775 -5.5920 2.5606 18 7 5.9354 -5.8149 3.8470 19 14 5.8643 -7.0112 1.3491 20 1 5.6562 -6.4990 -0.0292 21 1 7.1977 -7.6587 1.4400 22 1 4.8087 -8.0040 1.6733 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 2.3926 1.0963 -2.1693 27 1 2.8377 2.7197 -1.4870 28 1 4.9214 1.5873 -0.8638 29 1 4.1084 -0.0373 -0.8360 30 1 2.5377 1.3069 3.2651 31 1 1.5278 0.2750 2.2241 32 1 2.6202 -0.4646 3.4193 33 1 4.9091 1.3332 2.9812 34 1 5.6538 0.5200 1.5838 35 1 4.3333 -0.9226 3.9256 36 1 6.0868 -0.6690 3.7543 37 1 4.6695 -3.3422 3.7924 38 1 6.4230 -3.0890 3.6216 39 1 6.0966 -6.7164 4.1668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724163655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:51 Heat of formation + Delta-G solvation = -58.549559 kcal Electronic energy + Delta-G solvation = -18269.447902 eV Core-core repulsion = 15406.657604 eV Total energy + Delta-G solvation = -2862.790298 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.83964 -37.11731 -35.96554 -34.55395 -32.55298 -29.16748 -26.97149 -26.69368 -26.26510 -24.56198 -23.37929 -22.16426 -20.62984 -19.34943 -16.74242 -16.33997 -16.10213 -15.56608 -15.41956 -14.96654 -14.54507 -14.23276 -13.82413 -13.62331 -13.51893 -13.02313 -12.67607 -12.05283 -11.99741 -11.74357 -11.58716 -11.47230 -11.05691 -10.89481 -10.72153 -10.71186 -10.62525 -10.24316 -10.07743 -9.88217 -9.38193 -8.95110 -8.68077 -8.01799 -7.87322 -6.00634 -4.00603 3.36371 3.42356 3.50373 3.65005 4.23865 4.45128 4.60630 4.62951 4.90908 4.95262 5.03400 5.30438 5.31336 5.34429 5.36011 5.44485 5.56128 5.64062 5.69078 5.78956 5.81586 5.86882 6.03042 6.06999 6.17993 6.21262 6.36524 6.43158 6.53085 7.20652 7.23020 7.42928 7.53424 7.56514 7.92596 8.29310 8.75801 9.15558 9.63937 11.11298 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.005388 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.723668 B = 5195.820539 C = 5614.979601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C 0.075 3.925 4 H 0.064 0.936 5 C -0.163 4.163 6 C -0.117 4.117 7 C 0.052 3.948 8 H 0.066 0.934 9 N -0.501 5.501 10 C 0.027 3.973 11 C 0.060 3.940 12 C 0.068 3.932 13 O -0.377 6.377 14 C 0.194 3.806 15 C -0.506 4.506 16 H 0.067 0.933 17 C 0.054 3.946 18 N -0.902 5.902 19 Si 0.906 3.094 20 H -0.270 1.270 21 H -0.284 1.284 22 H -0.283 1.283 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.101 0.899 30 H 0.011 0.989 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.079 0.921 35 H 0.035 0.965 36 H 0.036 0.964 37 H 0.002 0.998 38 H 0.001 0.999 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.614 17.118 -5.689 19.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.256 6.256 3 C 0.015 3.985 4 H 0.082 0.918 5 C -0.201 4.201 6 C -0.155 4.155 7 C -0.057 4.057 8 H 0.084 0.916 9 N -0.225 5.225 10 C -0.121 4.121 11 C -0.068 4.068 12 C -0.011 4.011 13 O -0.296 6.296 14 C 0.119 3.881 15 C -0.544 4.544 16 H 0.086 0.914 17 C -0.147 4.147 18 N -0.542 5.542 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.209 1.209 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.106 0.894 26 H 0.095 0.905 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.119 0.881 30 H 0.029 0.971 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.513 16.341 -5.999 19.378 hybrid contribution -0.069 0.207 0.370 0.429 sum -8.582 16.548 -5.629 19.472 Atomic orbital electron populations 1.22816 0.81891 1.02901 0.99235 1.88144 1.18465 1.24890 1.94122 1.23125 0.93576 0.85653 0.96098 0.91776 1.23327 0.98193 1.00645 0.97942 1.22898 0.96024 1.02851 0.93711 1.23493 0.95814 0.93419 0.92953 0.91626 1.61989 1.01600 1.45061 1.13832 1.22402 0.95463 0.99340 0.94898 1.22158 0.91575 0.95490 0.97591 1.22238 0.98247 0.87734 0.92835 1.87964 1.92887 1.15072 1.33707 1.20164 0.94339 0.80751 0.92812 1.21123 1.48045 0.90767 0.94480 0.91444 1.24944 0.95421 0.98798 0.95488 1.69981 1.49790 1.21382 1.13024 0.86308 0.77493 0.81601 0.81269 1.19438 1.20974 1.20935 0.94434 0.94528 0.89400 0.90527 0.89870 0.91994 0.88058 0.97103 0.91232 0.91001 0.94840 0.90260 0.94664 0.94586 0.98026 0.98142 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.52 101.05 1.06 1.36 16 2 O -0.34 -4.91 8.87 -35.23 -0.31 -5.22 16 3 C 0.07 0.90 3.41 -25.91 -0.09 0.81 16 4 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 5 C -0.16 -1.75 7.91 -25.92 -0.21 -1.96 16 6 C -0.12 -1.54 7.60 -25.92 -0.20 -1.74 16 7 C 0.05 0.69 3.15 -66.90 -0.21 0.48 16 8 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 9 N -0.50 -8.22 4.35 -233.90 -1.02 -9.23 16 10 C 0.03 0.40 8.98 60.06 0.54 0.94 16 11 C 0.06 0.97 5.31 -3.82 -0.02 0.95 16 12 C 0.07 1.34 5.99 37.16 0.22 1.56 16 13 O -0.38 -9.68 10.27 -35.23 -0.36 -10.04 16 14 C 0.19 5.58 5.69 36.01 0.20 5.79 16 15 C -0.51 -15.55 9.43 -34.44 -0.32 -15.88 16 16 H 0.07 2.08 7.81 -52.49 -0.41 1.67 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.83 13.29 55.43 0.74 -27.10 16 19 Si 0.91 22.62 29.54 -169.99 -5.02 17.60 16 20 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.04 0.35 7.97 -51.93 -0.41 -0.07 16 24 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.01 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.99 5.59 -51.93 -0.29 0.70 16 32 H 0.07 1.18 6.37 -51.92 -0.33 0.85 16 33 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.08 1.30 7.91 -51.93 -0.41 0.89 16 35 H 0.04 0.69 6.34 -51.93 -0.33 0.36 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 38 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 316.95 15.07 4.78 4.78 Total: -1.00 -33.53 316.95 -7.11 -40.65 By element: Atomic # 1 Polarization: 1.53 SS G_CDS: -6.80 Total: -5.27 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 0.89 Total: -6.16 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.28 Total: -36.33 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.67 Total: -15.26 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.53 -7.11 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724163655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.901 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds