Wall clock time and date at job start Mon Mar 30 2020 04:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 114.00097 * 2 1 4 4 H 1.08998 * 112.90514 * 18.75290 * 3 2 1 5 5 C 1.53784 * 113.61422 * 247.49783 * 3 2 1 6 6 C 1.53778 * 87.07895 * 270.88731 * 5 3 2 7 7 C 1.53779 * 87.08568 * 334.56618 * 6 5 3 8 8 H 1.09002 * 113.69208 * 270.88145 * 7 6 5 9 9 N 1.46900 * 113.61513 * 139.98285 * 7 6 5 10 10 C 1.46900 * 110.99727 * 206.46120 * 9 7 6 11 11 C 1.46894 * 110.99613 * 82.50724 * 9 7 6 12 12 C 1.53009 * 109.46764 * 190.00090 * 11 9 7 13 13 O 1.42899 * 109.47113 * 64.99856 * 12 11 9 14 14 C 1.42903 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 H 1.09006 * 109.46818 * 300.00020 * 1 2 3 24 24 H 1.08998 * 109.47603 * 59.99527 * 1 2 3 25 25 H 1.08996 * 109.47603 * 180.02562 * 1 2 3 26 26 H 1.09003 * 113.61144 * 25.43116 * 5 3 2 27 27 H 1.08997 * 113.61444 * 156.25288 * 5 3 2 28 28 H 1.09001 * 113.61193 * 220.01838 * 6 5 3 29 29 H 1.09001 * 113.61989 * 89.11713 * 6 5 3 30 30 H 1.09003 * 109.47021 * 296.04554 * 10 9 7 31 31 H 1.08999 * 109.47780 * 56.04449 * 10 9 7 32 32 H 1.09007 * 109.46838 * 176.04890 * 10 9 7 33 33 H 1.09000 * 109.47283 * 70.00039 * 11 9 7 34 34 H 1.09002 * 109.47562 * 309.99359 * 11 9 7 35 35 H 1.09007 * 109.46516 * 304.99789 * 12 11 9 36 36 H 1.09004 * 109.47113 * 185.00258 * 12 11 9 37 37 H 1.09002 * 109.47382 * 59.99956 * 14 13 12 38 38 H 1.09001 * 109.46938 * 299.99942 * 14 13 12 39 39 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3143 2.0797 0.3228 5 6 2.7535 1.6489 -1.3018 6 6 4.0061 1.0329 -0.6565 7 6 3.3756 1.3718 0.7045 8 1 3.6305 2.3667 1.0698 9 7 3.5663 0.3258 1.7181 10 6 2.4938 0.3632 2.7213 11 6 4.8856 0.4425 2.3533 12 6 5.1487 -0.7951 3.2136 13 8 5.2337 -1.9490 2.3749 14 6 5.4783 -3.1657 3.0834 15 6 5.5478 -4.3107 2.1061 16 1 5.4185 -4.1276 1.0496 17 6 5.7775 -5.5920 2.5606 18 7 5.9354 -5.8149 3.8470 19 14 5.8643 -7.0112 1.3491 20 1 5.6562 -6.4990 -0.0292 21 1 7.1977 -7.6587 1.4400 22 1 4.8087 -8.0040 1.6733 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 2.3926 1.0963 -2.1693 27 1 2.8377 2.7197 -1.4870 28 1 4.9214 1.5873 -0.8638 29 1 4.1084 -0.0373 -0.8360 30 1 2.5377 1.3069 3.2651 31 1 1.5278 0.2750 2.2241 32 1 2.6202 -0.4646 3.4193 33 1 4.9091 1.3332 2.9812 34 1 5.6538 0.5200 1.5838 35 1 4.3333 -0.9226 3.9256 36 1 6.0868 -0.6690 3.7543 37 1 4.6695 -3.3422 3.7924 38 1 6.4230 -3.0890 3.6216 39 1 6.0966 -6.7164 4.1668 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724163655.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:50 Heat of formation + Delta-G solvation = -82.611110 kcal Electronic energy + Delta-G solvation = -18270.491289 eV Core-core repulsion = 15406.657604 eV Total energy + Delta-G solvation = -2863.833685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.83301 -38.75514 -37.27548 -35.79350 -34.80349 -30.78743 -28.87979 -27.69751 -27.43597 -25.52903 -24.67984 -24.33724 -21.97846 -20.31428 -18.61096 -17.79448 -17.42702 -17.20713 -16.60428 -16.37761 -16.11630 -15.67586 -15.29158 -15.09328 -14.61004 -14.45449 -13.94618 -13.57997 -13.47335 -13.13086 -12.84813 -12.74707 -12.68459 -12.51024 -12.41846 -12.24303 -12.02365 -11.65464 -11.47215 -11.22058 -11.00090 -10.83479 -10.33516 -10.15207 -9.02103 -8.31137 -6.42728 1.39027 1.41092 1.56281 2.36153 2.75378 3.02173 3.12332 3.28050 3.67344 3.72823 3.95693 4.13423 4.18901 4.26937 4.41287 4.45236 4.52865 4.56372 4.59555 4.63383 4.67356 4.72883 4.84398 4.88641 4.93752 5.00479 5.08500 5.12645 5.20338 5.32467 5.46296 5.56963 5.99079 6.21538 6.25069 6.56081 6.59201 6.89130 7.29618 8.81697 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.024390 B = 0.005388 C = 0.004985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.723668 B = 5195.820539 C = 5614.979601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.379 6.379 3 C 0.071 3.929 4 H 0.091 0.909 5 C -0.147 4.147 6 C -0.126 4.126 7 C 0.049 3.951 8 H 0.093 0.907 9 N -0.535 5.535 10 C 0.033 3.967 11 C 0.069 3.931 12 C 0.057 3.943 13 O -0.394 6.394 14 C 0.210 3.790 15 C -0.544 4.544 16 H 0.057 0.943 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.983 3.017 20 H -0.267 1.267 21 H -0.268 1.268 22 H -0.270 1.270 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.115 0.885 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.045 0.955 37 H -0.020 1.020 38 H -0.016 1.016 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 18.339 -6.601 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.298 6.298 3 C 0.013 3.987 4 H 0.109 0.891 5 C -0.185 4.185 6 C -0.164 4.164 7 C -0.060 4.060 8 H 0.111 0.889 9 N -0.259 5.259 10 C -0.115 4.115 11 C -0.058 4.058 12 C -0.020 4.020 13 O -0.314 6.314 14 C 0.135 3.865 15 C -0.581 4.581 16 H 0.075 0.925 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.806 3.194 20 H -0.191 1.191 21 H -0.193 1.193 22 H -0.195 1.195 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.089 0.911 27 H 0.134 0.866 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.054 0.946 36 H 0.063 0.937 37 H -0.003 1.003 38 H 0.001 0.999 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.092 17.590 -6.902 20.969 hybrid contribution 0.097 -0.112 0.704 0.720 sum -8.996 17.478 -6.197 20.611 Atomic orbital electron populations 1.22938 0.80277 1.03145 1.00762 1.88090 1.20486 1.26801 1.94374 1.23267 0.93572 0.85407 0.96460 0.89078 1.23307 0.95903 1.02200 0.97084 1.22835 0.98017 1.00574 0.94967 1.23678 0.96940 0.93618 0.91736 0.88942 1.61887 1.01648 1.47531 1.14870 1.22310 0.95286 0.99506 0.94421 1.22047 0.91886 0.94449 0.97449 1.22608 0.98816 0.87154 0.93436 1.87923 1.92869 1.15620 1.34954 1.19773 0.92482 0.82173 0.92088 1.21396 1.50067 0.92378 0.94298 0.92484 1.25958 0.93989 1.01567 0.97693 1.70079 1.49354 1.22720 1.14971 0.85143 0.78414 0.77494 0.78388 1.19103 1.19335 1.19505 0.93083 0.92688 0.89958 0.91109 0.86629 0.90696 0.92396 0.94570 0.90815 0.93635 0.91319 0.90693 0.94575 0.93671 1.00268 0.99855 0.92060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 10.52 113.37 1.19 1.69 16 2 O -0.38 -10.75 8.87 -148.98 -1.32 -12.07 16 3 C 0.07 1.56 3.41 31.12 0.11 1.67 16 4 H 0.09 1.48 7.87 -2.39 -0.02 1.46 16 5 C -0.15 -2.82 7.91 31.12 0.25 -2.58 16 6 C -0.13 -3.22 7.60 31.12 0.24 -2.98 16 7 C 0.05 1.19 3.15 45.44 0.14 1.33 16 8 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 9 N -0.53 -17.16 4.35 -893.92 -3.89 -21.06 16 10 C 0.03 0.94 8.98 127.69 1.15 2.08 16 11 C 0.07 2.20 5.31 86.31 0.46 2.66 16 12 C 0.06 2.31 5.99 71.99 0.43 2.74 16 13 O -0.39 -21.01 10.27 -148.98 -1.53 -22.54 16 14 C 0.21 12.63 5.69 71.24 0.41 13.03 16 15 C -0.54 -34.42 9.43 25.60 0.24 -34.18 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 17 C 0.01 0.36 5.46 84.66 0.46 0.82 16 18 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 19 Si 0.98 46.45 29.54 68.60 2.03 48.47 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H 0.05 0.85 7.97 -2.38 -0.02 0.83 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 2.03 5.59 -2.39 -0.01 2.02 16 32 H 0.04 1.52 6.37 -2.38 -0.02 1.50 16 33 H 0.07 1.70 8.12 -2.39 -0.02 1.68 16 34 H 0.07 2.42 7.91 -2.39 -0.02 2.40 16 35 H 0.04 1.45 6.34 -2.38 -0.02 1.43 16 36 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 37 H -0.02 -1.28 8.14 -2.39 -0.02 -1.30 16 38 H -0.02 -1.01 8.14 -2.39 -0.02 -1.02 16 39 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -74.08 316.95 1.63 -72.45 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: 0.99 Total: 6.23 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 5.07 Total: -13.71 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -3.61 Total: -78.83 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -2.85 Total: -34.61 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal Total: -74.08 1.63 -72.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724163655.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.164 kcal (2) G-P(sol) polarization free energy of solvation -74.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds