Wall clock time and date at job start Mon Mar 30 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00136 * 2 1 4 4 H 1.08998 * 110.63168 * 328.34730 * 3 2 1 5 5 C 1.54322 * 110.70306 * 91.45284 * 3 2 1 6 6 N 1.47446 * 107.23296 * 140.66773 * 5 3 2 7 7 C 1.47841 * 108.56777 * 0.98630 * 6 5 3 8 8 H 1.09005 * 110.37497 * 94.84356 * 7 6 5 9 9 C 1.52998 * 110.37618 * 217.07692 * 7 6 5 10 10 O 1.42905 * 109.46812 * 293.54594 * 9 7 6 11 11 C 1.42904 * 113.99610 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46716 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.54909 * 104.79621 * 335.90863 * 7 6 5 23 23 H 1.09000 * 109.46490 * 59.99889 * 1 2 3 24 24 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46983 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.89174 * 21.26184 * 5 3 2 27 27 H 1.09001 * 109.88954 * 260.06978 * 5 3 2 28 28 H 1.00900 * 110.99799 * 238.72077 * 6 5 3 29 29 H 1.09000 * 109.47192 * 173.54558 * 9 7 6 30 30 H 1.08994 * 109.47241 * 53.54505 * 9 7 6 31 31 H 1.09000 * 109.47053 * 59.99934 * 11 10 9 32 32 H 1.09002 * 109.47003 * 299.99669 * 11 10 9 33 33 H 1.09000 * 109.47441 * 60.00137 * 12 11 10 34 34 H 1.09002 * 109.47087 * 299.99583 * 12 11 10 35 35 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 36 36 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 38 38 H 1.09000 * 110.99477 * 155.16623 * 22 7 6 39 39 H 1.09003 * 110.98802 * 278.97812 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3733 2.0095 -0.5353 5 6 2.2656 1.7890 1.4431 6 7 3.5586 2.4977 1.4440 7 6 4.0985 2.4939 0.0677 8 1 3.8256 3.4139 -0.4495 9 6 5.6193 2.3289 0.0924 10 8 6.2142 3.4845 0.6865 11 6 7.6404 3.4317 0.7592 12 6 8.1656 4.7132 1.4094 13 6 9.6926 4.6569 1.4866 14 6 10.2101 5.9194 2.1265 15 1 9.5189 6.6855 2.4457 16 6 11.5658 6.0965 2.3044 17 7 12.4074 5.1639 1.9152 18 14 12.2072 7.6617 3.0969 19 1 13.6892 7.6066 3.1731 20 1 11.7962 8.8334 2.2823 21 1 11.6461 7.7893 4.4659 22 6 3.4344 1.2718 -0.6144 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 2.3108 0.9343 2.1181 27 1 1.4708 2.4674 1.7530 28 1 4.2061 2.0679 2.0875 29 1 5.9889 2.2131 -0.9264 30 1 5.8795 1.4458 0.6759 31 1 8.0522 3.3385 -0.2457 32 1 7.9421 2.5715 1.3568 33 1 7.7538 4.8059 2.4143 34 1 7.8639 5.5736 0.8121 35 1 10.1042 4.5644 0.4816 36 1 9.9948 3.7964 2.0836 37 1 12.0743 4.3513 1.5034 38 1 3.3962 1.4013 -1.6960 39 1 3.9515 0.3491 -0.3512 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724352061.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:24 Heat of formation + Delta-G solvation = -110.616377 kcal Electronic energy + Delta-G solvation = -17189.875497 eV Core-core repulsion = 14324.827413 eV Total energy + Delta-G solvation = -2865.048085 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.71400 -37.89346 -36.55409 -34.14332 -31.65528 -30.29949 -29.74269 -26.78512 -26.27593 -24.71237 -22.78105 -21.31687 -21.09547 -20.35059 -17.34560 -16.89141 -16.57273 -16.20577 -15.81773 -15.42318 -14.86177 -14.57313 -14.03471 -13.86827 -13.68068 -13.30718 -12.85320 -12.34002 -12.16116 -12.03612 -11.95842 -11.66827 -11.48416 -11.23512 -10.93086 -10.74398 -10.52079 -10.10903 -10.09653 -9.95156 -9.79232 -9.29797 -8.59007 -8.53858 -8.30213 -6.34099 -4.02664 3.18445 3.46889 3.49189 3.67722 3.87463 4.02863 4.25029 4.49703 4.58080 4.67922 4.86804 4.96371 4.98460 5.10712 5.14446 5.21886 5.30527 5.38475 5.43261 5.47776 5.52895 5.64096 5.65426 5.76249 5.95612 6.11026 6.57148 6.58449 6.65750 6.76732 6.96423 7.18968 7.39174 7.52869 7.54206 8.24663 8.49353 8.90982 9.69363 11.06680 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.078708 B = 0.002953 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.661476 B = 9478.476560 C = 9674.041174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.068 3.932 4 H 0.075 0.925 5 C 0.024 3.976 6 N -0.667 5.667 7 C 0.084 3.916 8 H 0.098 0.902 9 C 0.058 3.942 10 O -0.379 6.379 11 C 0.062 3.938 12 C -0.100 4.100 13 C 0.010 3.990 14 C -0.600 4.600 15 H 0.050 0.950 16 C 0.013 3.987 17 N -0.914 5.914 18 Si 1.070 2.930 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.287 1.287 22 C -0.144 4.144 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.076 0.924 28 H 0.346 0.654 29 H 0.054 0.946 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.007 0.993 36 H 0.007 0.993 37 H 0.268 0.732 38 H 0.083 0.917 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.375 -10.289 -5.073 25.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.009 3.991 4 H 0.093 0.907 5 C -0.106 4.106 6 N -0.298 5.298 7 C -0.026 4.026 8 H 0.116 0.884 9 C -0.020 4.020 10 O -0.298 6.298 11 C -0.014 4.014 12 C -0.137 4.137 13 C -0.027 4.027 14 C -0.638 4.638 15 H 0.068 0.932 16 C -0.190 4.190 17 N -0.551 5.551 18 Si 0.898 3.102 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.214 1.214 22 C -0.183 4.183 23 H 0.061 0.939 24 H 0.104 0.896 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.163 0.837 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.026 0.974 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -21.259 -8.858 -4.551 23.476 hybrid contribution -1.249 -1.818 -0.703 2.315 sum -22.508 -10.677 -5.253 25.459 Atomic orbital electron populations 1.22802 0.80878 1.02823 1.00152 1.87919 1.19875 1.27216 1.94963 1.23414 0.94792 0.84711 0.96210 0.90665 1.23165 0.93590 0.97307 0.96572 1.61742 1.04771 1.56262 1.07037 1.22474 0.92408 0.97890 0.89814 0.88433 1.22628 0.92272 0.89334 0.97725 1.87977 1.20881 1.39271 1.81687 1.22794 0.79121 1.00172 0.99361 1.21491 0.98184 0.94244 0.99831 1.19179 0.89502 0.97653 0.96338 1.22039 0.94506 1.03860 1.43406 0.93151 1.25888 0.93531 1.03389 0.96235 1.70791 1.37407 1.08346 1.38534 0.83526 0.76104 0.74440 0.76086 1.20797 1.21402 1.21400 1.23159 0.94464 0.99525 1.01135 0.93925 0.89573 0.93843 0.91899 0.90528 0.83656 0.92754 0.93609 0.93983 0.94001 0.92322 0.92405 0.97450 0.97437 0.92199 0.89784 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.88 101.05 1.10 1.29 16 2 O -0.38 -3.67 10.43 -35.23 -0.37 -4.04 16 3 C 0.07 0.61 3.40 -24.91 -0.08 0.53 16 4 H 0.08 0.61 7.88 -51.93 -0.41 0.20 16 5 C 0.02 0.23 7.36 -2.83 -0.02 0.21 16 6 N -0.67 -7.88 7.29 -103.84 -0.76 -8.64 16 7 C 0.08 0.94 3.68 -66.19 -0.24 0.70 16 8 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 9 C 0.06 0.74 5.26 37.16 0.20 0.93 16 10 O -0.38 -6.44 10.33 -35.23 -0.36 -6.81 16 11 C 0.06 1.13 5.94 37.16 0.22 1.35 16 12 C -0.10 -2.21 5.52 -26.73 -0.15 -2.36 16 13 C 0.01 0.27 4.28 -27.88 -0.12 0.15 16 14 C -0.60 -17.65 9.11 -34.44 -0.31 -17.96 16 15 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 16 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 17 N -0.91 -28.55 13.65 55.43 0.76 -27.79 16 18 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.14 -1.33 6.22 -24.59 -0.15 -1.48 16 23 H 0.04 0.23 8.11 -51.93 -0.42 -0.19 16 24 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.60 8.06 -51.93 -0.42 0.18 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.35 4.10 8.32 -39.29 -0.33 3.77 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.54 8.05 -51.93 -0.42 0.13 16 31 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 36 H 0.01 0.20 8.01 -51.93 -0.42 -0.22 16 37 H 0.27 8.29 7.22 -40.82 -0.29 8.00 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.78 8.06 -51.93 -0.42 0.37 16 LS Contribution 320.89 15.07 4.84 4.84 Total: -1.00 -32.47 320.89 -7.61 -40.08 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.97 Total: -2.02 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: 0.34 Total: -16.36 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.00 Total: -36.43 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: -0.73 Total: -10.84 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.47 -7.61 -40.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724352061.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.535 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds