Wall clock time and date at job start Mon Mar 30 2020 04:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00136 * 2 1 4 4 H 1.08998 * 110.63168 * 328.34730 * 3 2 1 5 5 C 1.54322 * 110.70306 * 91.45284 * 3 2 1 6 6 N 1.47446 * 107.23296 * 140.66773 * 5 3 2 7 7 C 1.47841 * 108.56777 * 0.98630 * 6 5 3 8 8 H 1.09005 * 110.37497 * 94.84356 * 7 6 5 9 9 C 1.52998 * 110.37618 * 217.07692 * 7 6 5 10 10 O 1.42905 * 109.46812 * 293.54594 * 9 7 6 11 11 C 1.42904 * 113.99610 * 179.97438 * 10 9 7 12 12 C 1.52996 * 109.46716 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.46929 * 180.02562 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.54909 * 104.79621 * 335.90863 * 7 6 5 23 23 H 1.09000 * 109.46490 * 59.99889 * 1 2 3 24 24 H 1.08999 * 109.47208 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.46983 * 300.00131 * 1 2 3 26 26 H 1.08999 * 109.89174 * 21.26184 * 5 3 2 27 27 H 1.09001 * 109.88954 * 260.06978 * 5 3 2 28 28 H 1.00900 * 110.99799 * 238.72077 * 6 5 3 29 29 H 1.09000 * 109.47192 * 173.54558 * 9 7 6 30 30 H 1.08994 * 109.47241 * 53.54505 * 9 7 6 31 31 H 1.09000 * 109.47053 * 59.99934 * 11 10 9 32 32 H 1.09002 * 109.47003 * 299.99669 * 11 10 9 33 33 H 1.09000 * 109.47441 * 60.00137 * 12 11 10 34 34 H 1.09002 * 109.47087 * 299.99583 * 12 11 10 35 35 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 36 36 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 37 37 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 38 38 H 1.09000 * 110.99477 * 155.16623 * 22 7 6 39 39 H 1.09003 * 110.98802 * 278.97812 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3733 2.0095 -0.5353 5 6 2.2656 1.7890 1.4431 6 7 3.5586 2.4977 1.4440 7 6 4.0985 2.4939 0.0677 8 1 3.8256 3.4139 -0.4495 9 6 5.6193 2.3289 0.0924 10 8 6.2142 3.4845 0.6865 11 6 7.6404 3.4317 0.7592 12 6 8.1656 4.7132 1.4094 13 6 9.6926 4.6569 1.4866 14 6 10.2101 5.9194 2.1265 15 1 9.5189 6.6855 2.4457 16 6 11.5658 6.0965 2.3044 17 7 12.4074 5.1639 1.9152 18 14 12.2072 7.6617 3.0969 19 1 13.6892 7.6066 3.1731 20 1 11.7962 8.8334 2.2823 21 1 11.6461 7.7893 4.4659 22 6 3.4344 1.2718 -0.6144 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 2.3108 0.9343 2.1181 27 1 1.4708 2.4674 1.7530 28 1 4.2061 2.0679 2.0875 29 1 5.9889 2.2131 -0.9264 30 1 5.8795 1.4458 0.6759 31 1 8.0522 3.3385 -0.2457 32 1 7.9421 2.5715 1.3568 33 1 7.7538 4.8059 2.4143 34 1 7.8639 5.5736 0.8121 35 1 10.1042 4.5644 0.4816 36 1 9.9948 3.7964 2.0836 37 1 12.0743 4.3513 1.5034 38 1 3.3962 1.4013 -1.6960 39 1 3.9515 0.3491 -0.3512 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724352061.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:46:24 Heat of formation + Delta-G solvation = -134.007815 kcal Electronic energy + Delta-G solvation = -17190.889826 eV Core-core repulsion = 14324.827413 eV Total energy + Delta-G solvation = -2866.062414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51920 -39.02207 -37.47331 -36.17045 -33.53233 -31.26964 -30.58906 -28.19286 -27.23607 -25.83117 -24.71912 -22.50854 -22.00155 -21.70254 -19.00788 -18.10744 -17.48369 -17.35409 -17.04190 -16.34863 -15.75539 -15.63466 -15.45361 -15.30038 -15.01556 -14.56189 -14.42721 -13.67335 -13.43443 -13.25191 -12.77755 -12.68549 -12.61135 -12.46225 -12.25682 -12.12211 -11.95306 -11.82013 -11.77802 -11.67090 -10.75986 -10.71648 -10.61445 -10.55409 -9.44136 -8.70991 -6.41282 1.53269 1.61971 1.81719 2.37166 2.57195 2.87711 3.14149 3.19961 3.51108 3.71319 3.96874 4.00003 4.05215 4.14716 4.26630 4.32178 4.41979 4.46906 4.49656 4.51655 4.52988 4.72847 4.76188 4.77920 4.80542 4.84044 4.92238 4.97002 5.10581 5.36412 5.46821 5.80546 5.96811 6.12609 6.16112 6.24269 6.32821 6.56653 7.40140 8.70391 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.078708 B = 0.002953 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.661476 B = 9478.476560 C = 9674.041174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.071 3.929 4 H 0.086 0.914 5 C 0.025 3.975 6 N -0.685 5.685 7 C 0.087 3.913 8 H 0.091 0.909 9 C 0.053 3.947 10 O -0.396 6.396 11 C 0.074 3.926 12 C -0.090 4.090 13 C 0.012 3.988 14 C -0.622 4.622 15 H 0.050 0.950 16 C -0.040 4.040 17 N -0.937 5.937 18 Si 1.119 2.881 19 H -0.281 1.281 20 H -0.268 1.268 21 H -0.269 1.269 22 C -0.136 4.136 23 H 0.053 0.947 24 H 0.097 0.903 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.343 0.657 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.052 0.948 35 H -0.006 1.006 36 H -0.006 1.006 37 H 0.256 0.744 38 H 0.098 0.902 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.617 -10.157 -5.288 26.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.319 6.319 3 C 0.012 3.988 4 H 0.104 0.896 5 C -0.104 4.104 6 N -0.316 5.316 7 C -0.023 4.023 8 H 0.109 0.891 9 C -0.024 4.024 10 O -0.315 6.315 11 C -0.002 4.002 12 C -0.128 4.128 13 C -0.025 4.025 14 C -0.660 4.660 15 H 0.068 0.932 16 C -0.237 4.237 17 N -0.574 5.574 18 Si 0.940 3.060 19 H -0.207 1.207 20 H -0.193 1.193 21 H -0.194 1.194 22 C -0.175 4.175 23 H 0.071 0.929 24 H 0.116 0.884 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.099 0.901 28 H 0.160 0.840 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.013 0.987 36 H 0.012 0.988 37 H 0.065 0.935 38 H 0.117 0.883 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.542 -8.748 -4.780 24.648 hybrid contribution -0.951 -1.916 -0.651 2.236 sum -23.493 -10.665 -5.430 26.365 Atomic orbital electron populations 1.22994 0.79349 1.03934 1.00987 1.87890 1.21626 1.27370 1.95033 1.23382 0.94872 0.84939 0.95634 0.89560 1.23181 0.92734 0.97239 0.97296 1.61761 1.05519 1.56972 1.07314 1.22421 0.91399 0.98579 0.89873 0.89107 1.22876 0.93001 0.88122 0.98360 1.87927 1.19710 1.41487 1.82408 1.22459 0.80280 0.98037 0.99465 1.21251 0.95269 0.96349 0.99899 1.19099 0.92464 0.96063 0.94918 1.22486 0.95027 1.04921 1.43535 0.93204 1.27504 0.94239 1.05903 0.96034 1.70923 1.37830 1.08686 1.39969 0.82915 0.75649 0.71101 0.76350 1.20674 1.19347 1.19393 1.23099 0.94349 0.98258 1.01831 0.92876 0.88427 0.93213 0.91946 0.90132 0.83980 0.91299 0.92671 0.93154 0.93299 0.92937 0.92920 0.98727 0.98766 0.93476 0.88303 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.88 113.37 1.23 1.49 16 2 O -0.40 -6.99 10.43 -148.98 -1.55 -8.54 16 3 C 0.07 1.15 3.40 31.78 0.11 1.26 16 4 H 0.09 1.21 7.88 -2.39 -0.02 1.19 16 5 C 0.03 0.46 7.36 86.65 0.64 1.10 16 6 N -0.68 -15.51 7.29 -482.44 -3.52 -19.03 16 7 C 0.09 1.83 3.68 45.39 0.17 1.99 16 8 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 9 C 0.05 1.27 5.26 71.98 0.38 1.65 16 10 O -0.40 -13.04 10.33 -148.98 -1.54 -14.58 16 11 C 0.07 2.65 5.94 71.98 0.43 3.07 16 12 C -0.09 -3.98 5.52 30.59 0.17 -3.81 16 13 C 0.01 0.62 4.28 29.85 0.13 0.75 16 14 C -0.62 -36.81 9.11 25.60 0.23 -36.57 16 15 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 16 C -0.04 -2.35 5.46 84.65 0.46 -1.89 16 17 N -0.94 -59.05 13.65 21.45 0.29 -58.75 16 18 Si 1.12 51.17 29.90 68.60 2.05 53.22 16 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 20 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 21 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 22 C -0.14 -2.27 6.22 31.98 0.20 -2.07 16 23 H 0.05 0.46 8.11 -2.39 -0.02 0.44 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 26 H 0.06 1.13 8.06 -2.39 -0.02 1.11 16 27 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.34 7.91 8.32 -89.69 -0.75 7.17 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.22 8.05 -2.39 -0.02 1.20 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 35 H -0.01 -0.31 8.01 -2.39 -0.02 -0.33 16 36 H -0.01 -0.33 8.01 -2.38 -0.02 -0.35 16 37 H 0.26 16.23 7.22 -92.71 -0.67 15.56 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.38 8.06 -2.39 -0.02 1.36 16 Total: -1.00 -68.71 320.89 0.23 -68.48 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.35 Total: 12.22 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 4.14 Total: -33.03 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -3.22 Total: -77.78 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -3.09 Total: -23.12 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -68.71 0.23 -68.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724352061.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.530 kcal (2) G-P(sol) polarization free energy of solvation -68.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds