Wall clock time and date at job start Mon Mar 30 2020 03:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47323 * 2 1 4 4 C 1.46903 * 111.00336 * 69.09270 * 3 2 1 5 5 C 1.50702 * 109.46919 * 71.33222 * 4 3 2 6 6 H 1.08005 * 119.99798 * 5.05567 * 5 4 3 7 7 C 1.37874 * 120.00280 * 185.06075 * 5 4 3 8 8 N 1.31511 * 119.99572 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00227 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46990 * 89.99918 * 9 7 5 11 11 H 1.48503 * 109.46978 * 209.99660 * 9 7 5 12 12 H 1.48496 * 109.46918 * 329.99613 * 9 7 5 13 13 C 1.46901 * 111.00096 * 305.14053 * 3 2 1 14 14 C 1.52999 * 109.46895 * 287.28987 * 13 3 2 15 15 O 1.42893 * 109.47362 * 65.24040 * 14 13 3 16 16 C 1.42909 * 114.00360 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.45022 * 332.60718 * 16 15 14 18 18 C 1.54505 * 110.51078 * 210.00102 * 16 15 14 19 19 C 1.54476 * 104.06262 * 241.35115 * 18 16 15 20 20 O 1.44427 * 104.80062 * 23.98389 * 19 18 16 21 21 C 1.44427 * 105.27531 * 319.48487 * 20 19 18 22 22 H 1.08996 * 109.46949 * 305.16577 * 1 2 3 23 23 H 1.09003 * 109.46731 * 65.16464 * 1 2 3 24 24 H 1.09000 * 109.47411 * 185.16503 * 1 2 3 25 25 H 1.09002 * 109.47183 * 239.99732 * 2 1 3 26 26 H 1.09000 * 109.46885 * 120.00504 * 2 1 3 27 27 H 1.08998 * 109.47279 * 191.33027 * 4 3 2 28 28 H 1.09003 * 109.47123 * 311.33810 * 4 3 2 29 29 H 0.97003 * 120.00010 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47188 * 167.29112 * 13 3 2 31 31 H 1.09002 * 109.46992 * 47.28911 * 13 3 2 32 32 H 1.09002 * 109.46923 * 185.24159 * 14 13 3 33 33 H 1.09003 * 109.47571 * 305.23790 * 14 13 3 34 34 H 1.08998 * 110.51434 * 0.02562 * 18 16 15 35 35 H 1.09004 * 110.50869 * 122.57725 * 18 16 15 36 36 H 1.09003 * 110.37376 * 142.80919 * 19 18 16 37 37 H 1.08999 * 110.37704 * 265.15453 * 19 18 16 38 38 H 1.09001 * 110.37092 * 281.68357 * 21 20 19 39 39 H 1.08996 * 110.37009 * 159.34293 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7338 2.0445 1.2811 5 6 2.6252 1.4699 2.3518 6 1 3.3888 0.7519 2.0909 7 6 2.4661 1.8606 3.6644 8 7 1.5366 2.7352 3.9820 9 14 3.5715 1.1490 4.9915 10 1 4.7763 2.0038 5.1430 11 1 2.8326 1.1023 6.2787 12 1 3.9843 -0.2248 4.6076 13 6 1.4510 2.1444 -1.1215 14 6 2.0986 1.6847 -2.4292 15 8 1.7454 0.3236 -2.6830 16 6 2.3015 -0.2063 -3.8881 17 1 2.4729 0.5911 -4.6113 18 6 1.3718 -1.2870 -4.4839 19 6 2.2335 -2.5691 -4.4764 20 8 3.2197 -2.3447 -3.4454 21 6 3.6149 -0.9632 -3.5910 22 1 -0.3633 0.5919 0.8401 23 1 -0.3633 0.4317 -0.9327 24 1 -0.3634 -1.0235 0.0925 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9204 3.1144 1.1886 28 1 0.6904 1.8794 1.5499 29 1 1.4249 3.0104 4.9054 30 1 1.6430 3.2074 -0.9749 31 1 0.3756 1.9725 -1.1685 32 1 1.7459 2.3106 -3.2489 33 1 3.1823 1.7697 -2.3476 34 1 0.4878 -1.4168 -3.8596 35 1 1.0837 -1.0240 -5.5017 36 1 1.6205 -3.4369 -4.2327 37 1 2.7190 -2.7056 -5.4427 38 1 4.3122 -0.8535 -4.4216 39 1 4.0630 -0.5974 -2.6672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724934227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:32 Heat of formation + Delta-G solvation = -84.863045 kcal Electronic energy + Delta-G solvation = -18563.549160 eV Core-core repulsion = 15699.617824 eV Total energy + Delta-G solvation = -2863.931337 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.64816 -37.75423 -36.09818 -32.58009 -31.50573 -29.93814 -28.94169 -28.25787 -25.68685 -23.34535 -22.80180 -21.97996 -21.16808 -19.09329 -17.17405 -16.49627 -16.10287 -15.85419 -15.38598 -15.03167 -14.71191 -14.03778 -13.82485 -13.59878 -12.99801 -12.59360 -12.44668 -12.15740 -11.74152 -11.60544 -11.52757 -11.25285 -11.18052 -11.02873 -10.78619 -10.65463 -10.54260 -10.27122 -10.13386 -9.89222 -9.57247 -9.16511 -8.97938 -8.34867 -7.03727 -5.94782 -3.95009 3.37281 3.42868 3.47920 3.76362 3.91991 4.49156 4.51760 4.79333 4.92059 4.98407 5.05960 5.27751 5.36402 5.40244 5.52651 5.60725 5.63433 5.69266 5.76775 5.83975 5.94762 6.08031 6.11489 6.28278 6.38205 6.41812 6.70270 6.78603 6.86350 7.21718 7.40145 7.44810 7.56361 7.92484 8.22125 8.36295 8.67704 9.14100 9.68845 11.15805 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.032704 B = 0.005407 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.952789 B = 5177.582648 C = 5508.782266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.059 3.941 3 N -0.532 5.532 4 C 0.187 3.813 5 C -0.500 4.500 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.902 5.902 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.048 3.952 14 C 0.067 3.933 15 O -0.357 6.357 16 C 0.053 3.947 17 H 0.071 0.929 18 C -0.155 4.155 19 C 0.045 3.955 20 O -0.367 6.367 21 C 0.024 3.976 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.043 0.957 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.021 0.979 28 H 0.001 0.999 29 H 0.260 0.740 30 H 0.078 0.922 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -5.521 -18.047 18.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.070 4.070 3 N -0.256 5.256 4 C 0.061 3.939 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.081 4.081 14 C -0.010 4.010 15 O -0.276 6.276 16 C -0.006 4.006 17 H 0.089 0.911 18 C -0.192 4.192 19 C -0.032 4.032 20 O -0.286 6.286 21 C -0.053 4.053 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.088 0.912 27 H 0.039 0.961 28 H 0.019 0.981 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.145 -5.692 -17.658 18.553 hybrid contribution -0.313 0.135 0.589 0.681 sum -0.168 -5.558 -17.068 17.951 Atomic orbital electron populations 1.22312 1.00007 1.00691 1.00947 1.22131 0.91667 0.90995 1.02164 1.62340 1.57345 1.02057 1.03854 1.19793 0.95682 0.93889 0.84489 1.21182 1.16822 1.24686 0.91163 0.91951 1.24981 0.95661 0.95425 0.98648 1.69962 1.33154 1.32622 1.18452 0.86528 0.80490 0.79563 0.81017 1.20739 1.21422 1.19847 1.22163 0.97254 0.97968 0.90686 1.22746 0.99682 0.81776 0.96761 1.88152 1.72635 1.27341 1.39481 1.23441 0.93105 0.95966 0.88043 0.91079 1.23071 1.00155 0.94595 1.01418 1.23379 0.90125 0.98027 0.91654 1.89190 1.58526 1.27348 1.53495 1.23988 0.96199 0.82312 1.02795 0.92629 0.93367 0.93798 0.90197 0.91164 0.96103 0.98082 0.93090 0.90411 0.94281 0.94059 0.92666 0.89196 0.90140 0.89057 0.92571 0.92123 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 9.15 37.16 0.34 -3.17 16 2 C 0.06 1.23 5.46 -3.83 -0.02 1.21 16 3 N -0.53 -11.76 4.61 -236.07 -1.09 -12.85 16 4 C 0.19 4.94 4.63 -4.97 -0.02 4.92 16 5 C -0.50 -14.39 8.38 -34.44 -0.29 -14.68 16 6 H 0.06 1.80 7.69 -52.48 -0.40 1.40 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.05 0.87 5.31 -3.82 -0.02 0.85 16 14 C 0.07 0.98 6.09 37.16 0.23 1.21 16 15 O -0.36 -5.34 6.96 -35.23 -0.25 -5.58 16 16 C 0.05 0.62 3.61 -25.17 -0.09 0.53 16 17 H 0.07 0.68 7.82 -51.92 -0.41 0.28 16 18 C -0.15 -1.54 6.90 -25.17 -0.17 -1.72 16 19 C 0.05 0.46 7.63 37.93 0.29 0.75 16 20 O -0.37 -5.16 11.65 -35.23 -0.41 -5.58 16 21 C 0.02 0.30 7.38 37.93 0.28 0.58 16 22 H 0.05 1.20 6.28 -51.93 -0.33 0.87 16 23 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.08 1.60 5.61 -51.93 -0.29 1.31 16 26 H 0.07 1.64 7.17 -51.93 -0.37 1.27 16 27 H 0.02 0.58 7.73 -51.93 -0.40 0.18 16 28 H 0.00 0.04 6.13 -51.93 -0.32 -0.28 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.08 1.37 7.72 -51.93 -0.40 0.97 16 31 H 0.04 0.71 5.66 -51.93 -0.29 0.42 16 32 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 1.01 8.00 -51.93 -0.42 0.59 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.10 1.43 8.09 -51.93 -0.42 1.01 16 LS Contribution 306.91 15.07 4.63 4.63 Total: -1.00 -31.48 306.91 -7.46 -38.93 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -6.47 Total: -2.12 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: 0.42 Total: -8.07 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.35 Total: -39.36 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.66 Total: -11.16 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.48 -7.46 -38.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724934227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.931 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds