Wall clock time and date at job start Mon Mar 30 2020 03:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46893 * 109.47323 * 2 1 4 4 C 1.46903 * 111.00336 * 69.09270 * 3 2 1 5 5 C 1.50702 * 109.46919 * 71.33222 * 4 3 2 6 6 H 1.08005 * 119.99798 * 5.05567 * 5 4 3 7 7 C 1.37874 * 120.00280 * 185.06075 * 5 4 3 8 8 N 1.31511 * 119.99572 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00227 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46990 * 89.99918 * 9 7 5 11 11 H 1.48503 * 109.46978 * 209.99660 * 9 7 5 12 12 H 1.48496 * 109.46918 * 329.99613 * 9 7 5 13 13 C 1.46901 * 111.00096 * 305.14053 * 3 2 1 14 14 C 1.52999 * 109.46895 * 287.28987 * 13 3 2 15 15 O 1.42893 * 109.47362 * 65.24040 * 14 13 3 16 16 C 1.42909 * 114.00360 * 179.97438 * 15 14 13 17 17 H 1.09007 * 110.45022 * 332.60718 * 16 15 14 18 18 C 1.54505 * 110.51078 * 210.00102 * 16 15 14 19 19 C 1.54476 * 104.06262 * 241.35115 * 18 16 15 20 20 O 1.44427 * 104.80062 * 23.98389 * 19 18 16 21 21 C 1.44427 * 105.27531 * 319.48487 * 20 19 18 22 22 H 1.08996 * 109.46949 * 305.16577 * 1 2 3 23 23 H 1.09003 * 109.46731 * 65.16464 * 1 2 3 24 24 H 1.09000 * 109.47411 * 185.16503 * 1 2 3 25 25 H 1.09002 * 109.47183 * 239.99732 * 2 1 3 26 26 H 1.09000 * 109.46885 * 120.00504 * 2 1 3 27 27 H 1.08998 * 109.47279 * 191.33027 * 4 3 2 28 28 H 1.09003 * 109.47123 * 311.33810 * 4 3 2 29 29 H 0.97003 * 120.00010 * 180.02562 * 8 7 5 30 30 H 1.09005 * 109.47188 * 167.29112 * 13 3 2 31 31 H 1.09002 * 109.46992 * 47.28911 * 13 3 2 32 32 H 1.09002 * 109.46923 * 185.24159 * 14 13 3 33 33 H 1.09003 * 109.47571 * 305.23790 * 14 13 3 34 34 H 1.08998 * 110.51434 * 0.02562 * 18 16 15 35 35 H 1.09004 * 110.50869 * 122.57725 * 18 16 15 36 36 H 1.09003 * 110.37376 * 142.80919 * 19 18 16 37 37 H 1.08999 * 110.37704 * 265.15453 * 19 18 16 38 38 H 1.09001 * 110.37092 * 281.68357 * 21 20 19 39 39 H 1.08996 * 110.37009 * 159.34293 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7338 2.0445 1.2811 5 6 2.6252 1.4699 2.3518 6 1 3.3888 0.7519 2.0909 7 6 2.4661 1.8606 3.6644 8 7 1.5366 2.7352 3.9820 9 14 3.5715 1.1490 4.9915 10 1 4.7763 2.0038 5.1430 11 1 2.8326 1.1023 6.2787 12 1 3.9843 -0.2248 4.6076 13 6 1.4510 2.1444 -1.1215 14 6 2.0986 1.6847 -2.4292 15 8 1.7454 0.3236 -2.6830 16 6 2.3015 -0.2063 -3.8881 17 1 2.4729 0.5911 -4.6113 18 6 1.3718 -1.2870 -4.4839 19 6 2.2335 -2.5691 -4.4764 20 8 3.2197 -2.3447 -3.4454 21 6 3.6149 -0.9632 -3.5910 22 1 -0.3633 0.5919 0.8401 23 1 -0.3633 0.4317 -0.9327 24 1 -0.3634 -1.0235 0.0925 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.9204 3.1144 1.1886 28 1 0.6904 1.8794 1.5499 29 1 1.4249 3.0104 4.9054 30 1 1.6430 3.2074 -0.9749 31 1 0.3756 1.9725 -1.1685 32 1 1.7459 2.3106 -3.2489 33 1 3.1823 1.7697 -2.3476 34 1 0.4878 -1.4168 -3.8596 35 1 1.0837 -1.0240 -5.5017 36 1 1.6205 -3.4369 -4.2327 37 1 2.7190 -2.7056 -5.4427 38 1 4.3122 -0.8535 -4.4216 39 1 4.0630 -0.5974 -2.6672 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724934227.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:32 Heat of formation + Delta-G solvation = -107.264112 kcal Electronic energy + Delta-G solvation = -18564.520543 eV Core-core repulsion = 15699.617824 eV Total energy + Delta-G solvation = -2864.902720 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60322 -39.19163 -37.44541 -34.73948 -32.51933 -31.35974 -30.54394 -29.38349 -27.55904 -24.97574 -24.04716 -23.41727 -22.05069 -20.78042 -18.35022 -18.18333 -17.45908 -16.98610 -16.76427 -16.57144 -15.97635 -15.65805 -15.22400 -14.97929 -14.45030 -14.28711 -13.60754 -13.46735 -13.23555 -13.13985 -12.83056 -12.73517 -12.55932 -12.44713 -12.33016 -12.29280 -12.09930 -11.84053 -11.65390 -11.40166 -11.20824 -10.79482 -10.57940 -10.14957 -8.85264 -8.17374 -6.26791 1.40231 1.41589 1.53127 2.41576 2.75574 3.08947 3.14152 3.41930 3.68655 3.95411 4.13519 4.23678 4.25918 4.30510 4.38539 4.48282 4.54772 4.55289 4.63547 4.77515 4.81596 4.83958 4.85414 4.91639 4.99893 5.03194 5.13736 5.19740 5.34536 5.38702 5.60563 5.71722 5.85310 6.12960 6.40193 6.47863 6.74311 6.90691 7.42545 8.92659 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.032704 B = 0.005407 C = 0.005082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.952789 B = 5177.582648 C = 5508.782266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.066 3.934 3 N -0.539 5.539 4 C 0.202 3.798 5 C -0.519 4.519 6 H 0.055 0.945 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.281 1.281 12 H -0.269 1.269 13 C 0.044 3.956 14 C 0.077 3.923 15 O -0.381 6.381 16 C 0.048 3.952 17 H 0.100 0.900 18 C -0.149 4.149 19 C 0.040 3.960 20 O -0.404 6.404 21 C 0.021 3.979 22 H 0.026 0.974 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.095 0.905 26 H 0.039 0.961 27 H 0.000 1.000 28 H -0.025 1.025 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.148 -6.122 -19.868 20.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.062 4.062 3 N -0.263 5.263 4 C 0.076 3.924 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.195 4.195 8 N -0.576 5.576 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.193 1.193 13 C -0.084 4.084 14 C 0.000 4.000 15 O -0.301 6.301 16 C -0.010 4.010 17 H 0.118 0.882 18 C -0.187 4.187 19 C -0.036 4.036 20 O -0.323 6.323 21 C -0.055 4.055 22 H 0.045 0.955 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.057 0.943 27 H 0.018 0.982 28 H -0.007 1.007 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.553 -6.299 -19.507 20.507 hybrid contribution -0.460 0.300 1.070 1.202 sum 0.093 -5.999 -18.438 19.389 Atomic orbital electron populations 1.22173 0.98668 1.01365 1.00475 1.22041 0.92695 0.90203 1.01257 1.62270 1.58255 1.02662 1.03106 1.19449 0.93702 0.92802 0.86489 1.21456 1.17113 1.24768 0.92366 0.92670 1.25857 0.97051 0.95625 1.01001 1.70079 1.34612 1.33695 1.19179 0.85441 0.78660 0.78951 0.77919 1.19688 1.20660 1.19308 1.22290 0.97484 0.97708 0.90941 1.22578 0.99145 0.82586 0.95657 1.88073 1.73077 1.27337 1.41578 1.23695 0.92965 0.97007 0.87323 0.88231 1.23089 0.99037 0.93831 1.02704 1.23609 0.89762 0.98407 0.91852 1.89147 1.59689 1.28234 1.55259 1.24050 0.97115 0.81818 1.02563 0.95525 0.91700 0.92045 0.88731 0.94274 0.98243 1.00704 0.92784 0.90443 0.94293 0.90442 0.92962 0.90691 0.87015 0.88595 0.90127 0.89487 0.90385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.53 9.15 71.98 0.66 -5.88 16 2 C 0.07 2.81 5.46 86.31 0.47 3.28 16 3 N -0.54 -24.29 4.61 -900.78 -4.15 -28.45 16 4 C 0.20 11.10 4.63 85.56 0.40 11.50 16 5 C -0.52 -30.67 8.38 25.60 0.21 -30.46 16 6 H 0.06 3.27 7.69 -2.91 -0.02 3.25 16 7 C 0.00 0.13 5.46 84.65 0.46 0.60 16 8 N -0.93 -57.56 13.29 21.45 0.28 -57.28 16 9 Si 0.97 45.90 29.54 68.60 2.03 47.92 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.04 1.57 5.31 86.30 0.46 2.03 16 14 C 0.08 2.10 6.09 71.98 0.44 2.54 16 15 O -0.38 -10.63 6.96 -148.98 -1.04 -11.67 16 16 C 0.05 0.98 3.61 31.61 0.11 1.10 16 17 H 0.10 1.48 7.82 -2.38 -0.02 1.46 16 18 C -0.15 -2.52 6.90 31.61 0.22 -2.30 16 19 C 0.04 0.71 7.63 72.48 0.55 1.27 16 20 O -0.40 -10.87 11.65 -148.98 -1.74 -12.60 16 21 C 0.02 0.49 7.38 72.48 0.53 1.02 16 22 H 0.03 1.17 6.28 -2.39 -0.02 1.15 16 23 H 0.06 2.28 6.37 -2.39 -0.02 2.27 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.09 3.78 5.61 -2.39 -0.01 3.77 16 26 H 0.04 1.88 7.17 -2.39 -0.02 1.86 16 27 H 0.00 -0.03 7.73 -2.39 -0.02 -0.05 16 28 H -0.02 -1.47 6.13 -2.39 -0.01 -1.48 16 29 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 30 H 0.08 2.74 7.72 -2.38 -0.02 2.72 16 31 H 0.04 1.39 5.66 -2.39 -0.01 1.38 16 32 H 0.08 1.59 8.11 -2.39 -0.02 1.57 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.51 8.00 -2.39 -0.02 1.49 16 35 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 2.15 8.09 -2.39 -0.02 2.13 16 Total: -1.00 -69.28 306.91 0.91 -68.36 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 1.01 Total: 9.02 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: 4.52 Total: -15.31 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -3.87 Total: -85.72 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -2.77 Total: -24.27 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.92 kcal Total: -69.28 0.91 -68.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724934227.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.901 kcal (2) G-P(sol) polarization free energy of solvation -69.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds