Wall clock time and date at job start Mon Mar 30 2020 03:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47617 * 2 1 4 4 C 1.50701 * 109.47480 * 120.00476 * 2 1 3 5 5 H 1.07995 * 120.00754 * 119.99674 * 4 2 1 6 6 C 1.37880 * 119.99396 * 299.99644 * 4 2 1 7 7 N 1.31517 * 119.99983 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00361 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47060 * 89.99889 * 8 6 4 10 10 H 1.48496 * 109.47203 * 209.99736 * 8 6 4 11 11 H 1.48500 * 109.46692 * 329.99902 * 8 6 4 12 12 N 1.46905 * 109.47233 * 240.00068 * 2 1 3 13 13 C 1.46900 * 111.00256 * 183.95414 * 12 2 1 14 14 C 1.46900 * 110.99907 * 59.99788 * 12 2 1 15 15 C 1.52999 * 109.47432 * 190.00460 * 14 12 2 16 16 O 1.42900 * 109.47062 * 64.99900 * 15 14 12 17 17 C 1.42902 * 114.00051 * 180.02562 * 16 15 14 18 18 H 1.09007 * 110.90331 * 327.87007 * 17 16 15 19 19 C 1.55300 * 110.85056 * 204.28634 * 17 16 15 20 20 C 1.54940 * 100.94415 * 207.67408 * 19 17 16 21 21 O 1.43641 * 105.13614 * 36.44473 * 20 19 17 22 22 C 1.43245 * 109.97106 * 335.57089 * 21 20 19 23 23 H 1.09001 * 109.47375 * 59.99847 * 1 2 3 24 24 H 1.09004 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46668 * 299.99857 * 1 2 3 26 26 H 0.96996 * 120.00577 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.46918 * 296.04785 * 13 12 2 28 28 H 1.08998 * 109.47140 * 56.04972 * 13 12 2 29 29 H 1.09003 * 109.46545 * 176.04537 * 13 12 2 30 30 H 1.08995 * 109.47066 * 69.99882 * 14 12 2 31 31 H 1.09001 * 109.47014 * 310.00375 * 14 12 2 32 32 H 1.08997 * 109.46657 * 305.00287 * 15 14 12 33 33 H 1.08997 * 109.47207 * 185.00475 * 15 14 12 34 34 H 1.09007 * 111.12449 * 325.59681 * 19 17 16 35 35 H 1.09003 * 111.12579 * 89.71164 * 19 17 16 36 36 H 1.08997 * 110.31031 * 277.52940 * 20 19 17 37 37 H 1.08999 * 110.30948 * 155.35829 * 20 19 17 38 38 H 1.09000 * 109.82609 * 121.22500 * 22 21 20 39 39 H 1.09004 * 109.83131 * 242.10652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8726 2.6999 10 1 0.9760 1.9950 3.9068 11 1 0.8471 2.1764 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7946 -1.1871 14 6 1.5486 -0.0264 -2.4211 15 6 1.8625 -0.9043 -3.6342 16 8 1.1116 -2.1173 -3.5514 17 6 1.3332 -3.0136 -4.6421 18 1 1.5435 -2.4647 -5.5601 19 6 0.1196 -3.9639 -4.8320 20 6 0.8093 -5.1994 -5.4631 21 8 2.0874 -5.2881 -4.8136 22 6 2.4750 -4.0010 -4.3185 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9028 -0.5285 4.4375 27 1 3.9192 0.2043 -1.2301 28 1 3.8069 -1.2916 -0.2720 29 1 3.8162 -1.3722 -2.0501 30 1 2.0518 0.9346 -2.5280 31 1 0.4722 0.1324 -2.3563 32 1 2.9274 -1.1365 -3.6487 33 1 1.5942 -0.3723 -4.5469 34 1 -0.3364 -4.2149 -3.8742 35 1 -0.6144 -3.5325 -5.5126 36 1 0.9393 -5.0535 -6.5355 37 1 0.2241 -6.0987 -5.2710 38 1 2.6269 -4.0500 -3.2403 39 1 3.3944 -3.6783 -4.8071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724936059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:47 Heat of formation + Delta-G solvation = -71.589335 kcal Electronic energy + Delta-G solvation = -18415.788370 eV Core-core repulsion = 15552.432624 eV Total energy + Delta-G solvation = -2863.355745 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.63699 -37.83566 -36.42965 -32.83225 -31.51644 -30.36287 -29.16365 -28.23398 -25.36186 -24.31873 -22.64742 -21.50773 -21.49125 -19.34752 -17.34029 -16.80078 -16.63219 -15.60182 -15.49459 -14.87452 -14.78058 -14.06711 -13.82238 -13.50312 -13.22177 -12.90296 -12.71616 -12.49200 -12.23208 -11.79313 -11.68121 -11.49179 -11.44608 -10.96732 -10.82825 -10.68714 -10.49678 -10.14068 -10.08938 -9.62181 -9.47538 -9.35376 -8.97792 -8.53737 -7.29121 -6.04174 -4.02438 3.28438 3.37220 3.39836 3.53605 3.96326 4.37687 4.41749 4.73686 4.80921 4.84656 5.02787 5.12200 5.27456 5.35527 5.42769 5.54643 5.60695 5.63030 5.65685 5.89013 5.91645 5.97477 6.11135 6.13923 6.28583 6.43936 6.52356 6.61990 6.82931 6.87173 6.93795 7.31270 7.36589 7.63460 7.97449 8.13021 8.68755 9.02719 9.57775 11.08626 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.035176 B = 0.005248 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.795026 B = 5334.241385 C = 5461.870345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.181 3.819 3 H -0.005 1.005 4 C -0.504 4.504 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.298 1.298 11 H -0.270 1.270 12 N -0.518 5.518 13 C 0.034 3.966 14 C 0.046 3.954 15 C 0.067 3.933 16 O -0.345 6.345 17 C 0.055 3.945 18 H 0.071 0.929 19 C -0.153 4.153 20 C 0.052 3.948 21 O -0.382 6.382 22 C 0.027 3.973 23 H 0.028 0.972 24 H 0.062 0.938 25 H 0.040 0.960 26 H 0.263 0.737 27 H 0.010 0.990 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -1.763 -18.352 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 H 0.013 0.987 4 C -0.542 4.542 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.718 3.282 9 H -0.205 1.205 10 H -0.226 1.226 11 H -0.196 1.196 12 N -0.242 5.242 13 C -0.114 4.114 14 C -0.082 4.082 15 C -0.010 4.010 16 O -0.264 6.264 17 C -0.004 4.004 18 H 0.089 0.911 19 C -0.190 4.190 20 C -0.024 4.024 21 O -0.301 6.301 22 C -0.050 4.050 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.103 0.897 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.112 0.888 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.438 -2.460 -17.960 18.291 hybrid contribution -0.222 1.968 -0.028 1.981 sum -2.660 -0.491 -17.988 18.190 Atomic orbital electron populations 1.22197 0.98518 1.01481 0.97972 1.19688 0.91516 0.92432 0.88948 0.98710 1.20995 1.31811 1.13499 0.87887 0.89863 1.24927 0.95844 0.96622 0.95821 1.69880 1.45829 1.40288 0.97848 0.86872 0.80843 0.83813 0.76695 1.20541 1.22563 1.19550 1.61905 1.09626 1.51737 1.00928 1.22309 0.88165 0.98738 1.02222 1.22203 1.01923 0.93641 0.90477 1.22686 0.95323 0.85513 0.97487 1.88153 1.65986 1.28803 1.43418 1.23582 0.94715 0.91530 0.90619 0.91139 1.23296 0.97592 0.95036 1.03105 1.23312 0.84444 0.98458 0.96227 1.88418 1.36172 1.29675 1.75861 1.23718 0.97129 0.83024 1.01121 0.95285 0.91883 0.94198 0.92662 0.97195 0.89672 0.93656 0.94436 0.89918 0.93251 0.93821 0.88841 0.89624 0.92299 0.89426 0.89367 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.47 37.16 0.31 -2.94 16 2 C 0.18 4.38 1.65 -68.86 -0.11 4.26 16 3 H 0.00 -0.11 7.20 -51.93 -0.37 -0.49 16 4 C -0.50 -14.23 8.46 -34.44 -0.29 -14.52 16 5 H 0.08 2.55 6.65 -52.49 -0.35 2.20 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 8 Si 0.89 22.17 24.37 -169.99 -4.14 18.03 16 9 H -0.28 -6.80 6.87 56.52 0.39 -6.41 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 12 N -0.52 -10.88 4.57 -236.29 -1.08 -11.96 16 13 C 0.03 0.66 9.05 60.06 0.54 1.20 16 14 C 0.05 0.78 5.16 -3.82 -0.02 0.76 16 15 C 0.07 0.94 5.87 37.16 0.22 1.16 16 16 O -0.35 -5.36 10.03 -35.23 -0.35 -5.71 16 17 C 0.05 0.67 3.44 -24.79 -0.09 0.58 16 18 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 19 C -0.15 -1.63 6.89 -24.49 -0.17 -1.80 16 20 C 0.05 0.53 7.78 38.18 0.30 0.82 16 21 O -0.38 -5.20 11.36 -35.23 -0.40 -5.60 16 22 C 0.03 0.35 7.58 37.88 0.29 0.64 16 23 H 0.03 0.56 6.20 -51.93 -0.32 0.24 16 24 H 0.06 1.45 8.14 -51.93 -0.42 1.03 16 25 H 0.04 0.93 3.27 -51.93 -0.17 0.76 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.08 1.87 6.10 -51.93 -0.32 1.55 16 29 H 0.04 0.75 6.37 -51.93 -0.33 0.42 16 30 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.08 1.42 5.83 -51.93 -0.30 1.12 16 32 H 0.05 0.67 6.33 -51.93 -0.33 0.34 16 33 H 0.04 0.50 8.11 -51.93 -0.42 0.08 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -31.53 300.03 -6.10 -37.64 By element: Atomic # 1 Polarization: 4.17 SS G_CDS: -6.31 Total: -2.14 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 0.88 Total: -7.91 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.31 Total: -38.82 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.75 Total: -11.31 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.14 Total: 18.03 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.53 -6.10 -37.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724936059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.952 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds