Wall clock time and date at job start Mon Mar 30 2020 03:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47617 * 2 1 4 4 C 1.50701 * 109.47480 * 120.00476 * 2 1 3 5 5 H 1.07995 * 120.00754 * 119.99674 * 4 2 1 6 6 C 1.37880 * 119.99396 * 299.99644 * 4 2 1 7 7 N 1.31517 * 119.99983 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 120.00361 * 0.02562 * 6 4 2 9 9 H 1.48504 * 109.47060 * 89.99889 * 8 6 4 10 10 H 1.48496 * 109.47203 * 209.99736 * 8 6 4 11 11 H 1.48500 * 109.46692 * 329.99902 * 8 6 4 12 12 N 1.46905 * 109.47233 * 240.00068 * 2 1 3 13 13 C 1.46900 * 111.00256 * 183.95414 * 12 2 1 14 14 C 1.46900 * 110.99907 * 59.99788 * 12 2 1 15 15 C 1.52999 * 109.47432 * 190.00460 * 14 12 2 16 16 O 1.42900 * 109.47062 * 64.99900 * 15 14 12 17 17 C 1.42902 * 114.00051 * 180.02562 * 16 15 14 18 18 H 1.09007 * 110.90331 * 327.87007 * 17 16 15 19 19 C 1.55300 * 110.85056 * 204.28634 * 17 16 15 20 20 C 1.54940 * 100.94415 * 207.67408 * 19 17 16 21 21 O 1.43641 * 105.13614 * 36.44473 * 20 19 17 22 22 C 1.43245 * 109.97106 * 335.57089 * 21 20 19 23 23 H 1.09001 * 109.47375 * 59.99847 * 1 2 3 24 24 H 1.09004 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46668 * 299.99857 * 1 2 3 26 26 H 0.96996 * 120.00577 * 180.02562 * 7 6 4 27 27 H 1.08993 * 109.46918 * 296.04785 * 13 12 2 28 28 H 1.08998 * 109.47140 * 56.04972 * 13 12 2 29 29 H 1.09003 * 109.46545 * 176.04537 * 13 12 2 30 30 H 1.08995 * 109.47066 * 69.99882 * 14 12 2 31 31 H 1.09001 * 109.47014 * 310.00375 * 14 12 2 32 32 H 1.08997 * 109.46657 * 305.00287 * 15 14 12 33 33 H 1.08997 * 109.47207 * 185.00475 * 15 14 12 34 34 H 1.09007 * 111.12449 * 325.59681 * 19 17 16 35 35 H 1.09003 * 111.12579 * 89.71164 * 19 17 16 36 36 H 1.08997 * 110.31031 * 277.52940 * 20 19 17 37 37 H 1.08999 * 110.30948 * 155.35829 * 20 19 17 38 38 H 1.09000 * 109.82609 * 121.22500 * 22 21 20 39 39 H 1.09004 * 109.83131 * 242.10652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8726 2.6999 10 1 0.9760 1.9950 3.9068 11 1 0.8471 2.1764 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7946 -1.1871 14 6 1.5486 -0.0264 -2.4211 15 6 1.8625 -0.9043 -3.6342 16 8 1.1116 -2.1173 -3.5514 17 6 1.3332 -3.0136 -4.6421 18 1 1.5435 -2.4647 -5.5601 19 6 0.1196 -3.9639 -4.8320 20 6 0.8093 -5.1994 -5.4631 21 8 2.0874 -5.2881 -4.8136 22 6 2.4750 -4.0010 -4.3185 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.9028 -0.5285 4.4375 27 1 3.9192 0.2043 -1.2301 28 1 3.8069 -1.2916 -0.2720 29 1 3.8162 -1.3722 -2.0501 30 1 2.0518 0.9346 -2.5280 31 1 0.4722 0.1324 -2.3563 32 1 2.9274 -1.1365 -3.6487 33 1 1.5942 -0.3723 -4.5469 34 1 -0.3364 -4.2149 -3.8742 35 1 -0.6144 -3.5325 -5.5126 36 1 0.9393 -5.0535 -6.5355 37 1 0.2241 -6.0987 -5.2710 38 1 2.6269 -4.0500 -3.2403 39 1 3.3944 -3.6783 -4.8071 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724936059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:46 Heat of formation + Delta-G solvation = -96.093227 kcal Electronic energy + Delta-G solvation = -18416.850938 eV Core-core repulsion = 15552.432624 eV Total energy + Delta-G solvation = -2864.418314 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 243.162 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.59808 -39.24063 -37.74064 -34.81608 -32.74385 -31.96942 -30.36224 -29.37178 -27.22046 -26.01164 -23.62752 -22.93515 -22.42204 -21.05091 -18.87306 -18.32382 -17.61364 -17.18236 -16.64079 -16.37579 -15.82666 -15.64533 -15.29705 -14.82842 -14.67129 -14.28806 -14.26010 -13.91729 -13.67782 -13.29417 -12.88035 -12.75677 -12.63004 -12.48757 -12.40223 -12.20637 -12.03554 -11.77341 -11.49779 -11.38155 -10.99960 -10.72502 -10.56190 -10.38596 -8.92039 -8.27319 -6.30472 1.30577 1.34586 1.45279 2.32241 2.57212 3.05442 3.07224 3.24723 3.50992 3.90787 3.98402 4.11246 4.24427 4.25944 4.35597 4.42321 4.51714 4.56523 4.63342 4.69912 4.71427 4.76229 4.79360 4.84016 4.87131 4.91981 4.97001 5.10163 5.13227 5.24305 5.45768 5.66219 5.97900 6.03600 6.33119 6.45601 6.73842 6.77987 7.34208 8.89208 Molecular weight = 243.16amu Principal moments of inertia in cm(-1) A = 0.035176 B = 0.005248 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.795026 B = 5334.241385 C = 5461.870345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.184 3.816 3 H -0.008 1.008 4 C -0.507 4.507 5 H 0.040 0.960 6 C 0.010 3.990 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.266 1.266 10 H -0.298 1.298 11 H -0.250 1.250 12 N -0.536 5.536 13 C 0.040 3.960 14 C 0.043 3.957 15 C 0.069 3.931 16 O -0.376 6.376 17 C 0.053 3.947 18 H 0.102 0.898 19 C -0.150 4.150 20 C 0.048 3.952 21 O -0.407 6.407 22 C 0.026 3.974 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.034 0.966 26 H 0.265 0.735 27 H 0.018 0.982 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -0.156 -21.293 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.076 3.924 3 H 0.009 0.991 4 C -0.545 4.545 5 H 0.058 0.942 6 C -0.187 4.187 7 N -0.591 5.591 8 Si 0.778 3.222 9 H -0.192 1.192 10 H -0.226 1.226 11 H -0.174 1.174 12 N -0.261 5.261 13 C -0.108 4.108 14 C -0.085 4.085 15 C -0.007 4.007 16 O -0.295 6.295 17 C -0.005 4.005 18 H 0.119 0.881 19 C -0.188 4.188 20 C -0.027 4.027 21 O -0.327 6.327 22 C -0.051 4.051 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.103 0.897 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.723 -0.857 -20.940 21.285 hybrid contribution 0.244 1.347 0.821 1.597 sum -3.479 0.490 -20.118 20.423 Atomic orbital electron populations 1.22087 0.96959 1.01152 0.99429 1.19519 0.92661 0.91592 0.88642 0.99095 1.21260 1.30814 1.12269 0.90174 0.94205 1.25805 0.97445 1.00086 0.95336 1.70040 1.47908 1.42570 0.98533 0.85820 0.79224 0.79928 0.77190 1.19238 1.22597 1.17374 1.61821 1.10213 1.52467 1.01560 1.22203 0.87820 0.99191 1.01557 1.22340 1.01862 0.94802 0.89467 1.22698 0.95448 0.85161 0.97391 1.88113 1.66384 1.29699 1.45304 1.23774 0.94784 0.91211 0.90766 0.88071 1.23315 0.97678 0.95119 1.02659 1.23554 0.83093 0.98762 0.97331 1.88384 1.37870 1.30136 1.76351 1.23680 0.98553 0.83479 0.99353 0.91627 0.93188 0.94785 0.92578 0.96343 0.93516 0.90804 0.92835 0.89938 0.92921 0.90104 0.91176 0.86953 0.89681 0.88460 0.92696 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.00 8.47 71.98 0.61 -5.39 16 2 C 0.18 8.75 1.65 44.17 0.07 8.83 16 3 H -0.01 -0.40 7.20 -2.39 -0.02 -0.42 16 4 C -0.51 -29.53 8.46 25.60 0.22 -29.32 16 5 H 0.04 2.60 6.65 -2.91 -0.02 2.58 16 6 C 0.01 0.60 5.45 84.65 0.46 1.06 16 7 N -0.95 -60.41 13.96 21.45 0.30 -60.11 16 8 Si 0.95 45.51 24.37 68.60 1.67 47.18 16 9 H -0.27 -12.15 6.87 99.48 0.68 -11.47 16 10 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 11 H -0.25 -11.03 6.53 99.48 0.65 -10.38 16 12 N -0.54 -22.12 4.57 -901.48 -4.12 -26.24 16 13 C 0.04 1.58 9.05 127.69 1.16 2.73 16 14 C 0.04 1.34 5.16 86.30 0.45 1.78 16 15 C 0.07 1.72 5.87 71.98 0.42 2.14 16 16 O -0.38 -10.87 10.03 -148.98 -1.49 -12.36 16 17 C 0.05 1.16 3.44 31.85 0.11 1.27 16 18 H 0.10 1.60 7.90 -2.38 -0.02 1.59 16 19 C -0.15 -2.88 6.89 32.05 0.22 -2.66 16 20 C 0.05 0.87 7.78 72.65 0.56 1.43 16 21 O -0.41 -10.69 11.36 -148.98 -1.69 -12.38 16 22 C 0.03 0.66 7.58 72.45 0.55 1.21 16 23 H 0.07 2.33 6.20 -2.39 -0.01 2.31 16 24 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.03 1.49 3.27 -2.39 -0.01 1.48 16 26 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 2.15 6.10 -2.39 -0.01 2.14 16 29 H 0.07 2.41 6.37 -2.39 -0.02 2.39 16 30 H 0.05 1.51 8.12 -2.39 -0.02 1.49 16 31 H 0.08 2.55 5.83 -2.39 -0.01 2.53 16 32 H 0.05 1.26 6.33 -2.39 -0.02 1.24 16 33 H 0.08 1.44 8.11 -2.39 -0.02 1.42 16 34 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 39 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -70.74 300.03 0.43 -70.31 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: 0.94 Total: 10.51 kcal Atomic # 6 Polarization: -21.73 SS G_CDS: 4.83 Total: -16.90 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.82 Total: -86.35 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -3.19 Total: -24.74 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -70.74 0.43 -70.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724936059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.785 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds