Wall clock time and date at job start Mon Mar 30 2020 04:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31700 * 1 3 3 Si 1.86800 * 119.99533 * 2 1 4 4 H 1.48500 * 109.47258 * 239.99898 * 3 2 1 5 5 H 1.48501 * 109.47359 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46998 * 120.00295 * 3 2 1 7 7 C 1.38574 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99531 * 180.02562 * 7 2 1 9 9 N 1.36905 * 119.99908 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99599 * 180.02562 * 9 7 2 11 11 O 1.22529 * 120.00257 * 0.02562 * 10 9 7 12 12 C 1.37615 * 120.00031 * 180.02562 * 10 9 7 13 13 S 1.76673 * 127.05439 * 0.02933 * 12 10 9 14 14 C 1.71203 * 97.88657 * 179.97438 * 13 12 10 15 15 C 1.38258 * 110.08726 * 0.02562 * 14 13 12 16 16 N 1.30797 * 122.43808 * 180.02562 * 15 14 13 17 17 O 1.41605 * 119.99830 * 179.97438 * 16 15 14 18 18 O 1.41603 * 120.00272 * 359.97019 * 16 15 14 19 19 C 1.49175 * 115.12082 * 359.74994 * 15 14 13 20 20 H 0.96998 * 120.00306 * 0.02562 * 1 2 3 21 21 H 0.96996 * 120.00530 * 0.02562 * 9 7 2 22 22 H 1.08002 * 124.96076 * 179.97438 * 14 13 12 23 23 H 0.96692 * 114.00130 * 180.02562 * 18 16 15 24 24 H 1.09001 * 109.30652 * 239.92782 * 19 15 14 25 25 H 1.09011 * 109.05348 * 120.75741 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3170 0.0000 0.0000 3 14 2.2509 1.6178 0.0000 4 1 3.1046 1.6966 -1.2125 5 1 1.2858 2.7465 0.0006 6 1 3.1046 1.6965 1.2125 7 6 2.0099 -1.2001 -0.0005 8 1 3.0898 -1.2000 -0.0001 9 7 1.3254 -2.3857 -0.0005 10 6 1.9993 -3.5529 -0.0005 11 8 3.2246 -3.5528 -0.0001 12 6 1.3113 -4.7447 -0.0011 13 16 -0.4420 -4.9618 -0.0025 14 6 -0.4667 -6.6736 -0.0032 15 6 0.8247 -7.1672 -0.0019 16 7 1.0860 -8.4488 -0.0026 17 8 2.4291 -8.8976 -0.0016 18 8 0.0259 -9.3876 -0.0042 19 6 1.8985 -6.1316 -0.0060 20 1 -0.4850 0.8400 -0.0004 21 1 0.3554 -2.3858 -0.0005 22 1 -1.3607 -7.2797 -0.0038 23 1 0.3170 -10.3096 -0.0042 24 1 2.5154 -6.2558 -0.8960 25 1 2.5207 -6.2606 0.8797 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725568781.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:29 Heat of formation + Delta-G solvation = 8.033367 kcal Electronic energy + Delta-G solvation = -14806.116079 eV Core-core repulsion = 11916.040710 eV Total energy + Delta-G solvation = -2890.075369 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 244.035 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.34024 -38.99151 -37.83281 -36.23853 -35.08413 -32.91755 -31.21909 -29.40372 -27.51296 -25.96221 -22.24944 -21.84917 -20.24031 -19.14499 -18.73823 -18.50447 -16.91011 -16.78842 -16.49686 -15.95413 -15.69169 -14.63510 -14.54631 -14.48395 -14.35468 -14.34984 -13.78757 -13.27729 -12.67798 -12.24505 -12.13344 -11.89994 -11.44610 -11.25500 -10.97857 -10.78439 -10.55225 -10.07665 -9.66470 -7.91973 -6.41533 -1.86000 0.84536 0.85478 1.21437 1.50120 1.56496 1.60371 1.84508 1.95082 2.08811 2.15159 2.31774 3.02532 3.65558 3.98743 4.26565 4.49834 4.56699 4.57596 4.80684 4.84311 5.04326 5.31661 5.58326 5.95500 6.29518 6.88385 7.36567 7.49003 Molecular weight = 244.03amu Principal moments of inertia in cm(-1) A = 0.055155 B = 0.005442 C = 0.004967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.534138 B = 5143.691322 C = 5636.106440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.078 4.078 3 Si 1.055 2.945 4 H -0.231 1.231 5 H -0.236 1.236 6 H -0.231 1.231 7 C 0.287 3.713 8 H 0.229 0.771 9 N -0.472 5.472 10 C 0.439 3.561 11 O -0.650 6.650 12 C -0.415 4.415 13 S 0.053 5.947 14 C -0.507 4.507 15 C 0.215 3.785 16 N -0.269 5.269 17 O -0.696 6.696 18 O -0.364 6.364 19 C 0.031 3.969 20 H 0.378 0.622 21 H 0.432 0.568 22 H 0.128 0.872 23 H 0.395 0.605 24 H 0.042 0.958 25 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.697 30.949 -0.006 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.204 5.204 2 C -0.310 4.310 3 Si 0.863 3.137 4 H -0.153 1.153 5 H -0.158 1.158 6 H -0.154 1.154 7 C 0.108 3.892 8 H 0.245 0.755 9 N -0.082 5.082 10 C 0.262 3.738 11 O -0.552 6.552 12 C -0.536 4.536 13 S 0.301 5.699 14 C -0.654 4.654 15 C 0.084 3.916 16 N -0.039 5.039 17 O -0.742 6.742 18 O -0.251 6.251 19 C -0.008 4.008 20 H 0.198 0.802 21 H 0.273 0.727 22 H 0.146 0.854 23 H 0.243 0.757 24 H 0.061 0.939 25 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.563 31.263 -0.006 31.595 hybrid contribution 0.682 -2.844 0.002 2.925 sum -3.881 28.419 -0.004 28.683 Atomic orbital electron populations 1.69712 1.09512 1.41539 0.99608 1.29033 0.97867 1.06365 0.97701 0.84059 0.78728 0.67515 0.83418 1.15348 1.15766 1.15360 1.25804 1.03056 0.82825 0.77539 0.75477 1.45309 1.14777 1.08030 1.40104 1.14113 0.87025 0.81491 0.91148 1.90964 1.12258 1.84835 1.67184 1.23848 0.96829 0.94521 1.38429 1.79792 1.01964 1.01234 1.86893 1.23478 0.95610 0.98545 1.47775 1.19435 0.95463 0.81415 0.95296 1.46796 0.96182 0.97692 1.63222 1.97126 0.91792 1.87582 1.97669 1.88832 1.18865 1.18608 1.98790 1.17942 0.94203 0.88983 0.99711 0.80247 0.72715 0.85430 0.75681 0.93935 0.94002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.58 -4.40 13.05 21.61 0.28 -4.12 15 2 C -0.08 -0.44 5.49 84.79 0.47 0.03 15 3 Si 1.05 -0.67 29.55 68.60 2.03 1.36 15 4 H -0.23 -0.13 7.11 99.48 0.71 0.58 15 5 H -0.24 0.28 7.11 99.48 0.71 0.99 15 6 H -0.23 -0.13 7.11 99.48 0.71 0.57 15 7 C 0.29 3.77 9.66 83.98 0.81 4.58 15 8 H 0.23 2.06 7.14 -2.91 -0.02 2.04 15 9 N -0.47 -12.17 5.26 -318.00 -1.67 -13.84 15 10 C 0.44 18.42 7.41 84.09 0.62 19.04 15 11 O -0.65 -31.02 16.46 -7.07 -0.12 -31.14 15 12 C -0.42 -21.16 6.66 25.51 0.17 -20.99 15 13 S 0.05 2.48 21.67 -56.49 -1.22 1.25 15 14 C -0.51 -29.64 10.48 67.82 0.71 -28.93 15 15 C 0.21 14.21 6.81 42.24 0.29 14.49 15 16 N -0.27 -19.05 4.97 -49.59 -0.25 -19.29 15 17 O -0.70 -55.77 19.86 -17.20 -0.34 -56.11 15 18 O -0.36 -21.81 14.14 -17.20 -0.24 -22.05 15 19 C 0.03 1.96 5.28 28.60 0.15 2.11 15 20 H 0.38 0.65 8.31 -92.71 -0.77 -0.12 15 21 H 0.43 10.24 6.89 -92.71 -0.64 9.61 15 22 H 0.13 7.41 7.76 -2.91 -0.02 7.38 15 23 H 0.40 19.80 9.20 -74.06 -0.68 19.12 15 24 H 0.04 2.85 8.14 -2.39 -0.02 2.83 15 25 H 0.04 2.81 8.14 -2.38 -0.02 2.79 15 Total: -1.00 -109.48 253.67 1.63 -107.84 By element: Atomic # 1 Polarization: 45.83 SS G_CDS: -0.05 Total: 45.78 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 3.22 Total: -9.67 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -1.64 Total: -37.26 kcal Atomic # 8 Polarization: -108.60 SS G_CDS: -0.70 Total: -109.30 kcal Atomic # 14 Polarization: -0.67 SS G_CDS: 2.03 Total: 1.36 kcal Atomic # 16 Polarization: 2.48 SS G_CDS: -1.22 Total: 1.25 kcal Total: -109.48 1.63 -107.84 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725568781.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.877 kcal (2) G-P(sol) polarization free energy of solvation -109.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -107.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds