Wall clock time and date at job start Mon Mar 30 2020 05:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 103.00255 * 2 1 4 4 H 1.08998 * 109.46150 * 55.01131 * 3 2 1 5 5 C 1.49613 * 109.46288 * 295.07351 * 3 2 1 6 6 C 1.31318 * 118.46874 * 258.92027 * 5 3 2 7 7 S 1.77710 * 108.14037 * 359.81350 * 6 5 3 8 8 C 1.54780 * 109.46722 * 175.00231 * 3 2 1 9 9 C 1.50706 * 111.22742 * 211.91974 * 8 3 2 10 10 O 1.21293 * 119.99769 * 333.76765 * 9 8 3 11 11 N 1.34772 * 120.00186 * 153.76842 * 9 8 3 12 12 C 1.37095 * 120.00109 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99966 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00272 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99928 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99736 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.46861 * 90.00171 * 16 14 12 18 18 H 1.48500 * 109.46717 * 210.00251 * 16 14 12 19 19 H 1.48499 * 109.47023 * 330.00121 * 16 14 12 20 20 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46848 * 299.99690 * 1 2 3 22 22 H 1.09000 * 109.47374 * 59.99971 * 1 2 3 23 23 H 1.08003 * 120.76516 * 78.94944 * 5 3 2 24 24 H 1.07995 * 125.92960 * 179.81350 * 6 5 3 25 25 H 1.09004 * 111.22945 * 336.29551 * 8 3 2 26 26 H 0.96997 * 119.99994 * 359.97438 * 11 9 8 27 27 H 0.96999 * 119.99241 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7297 2.2539 0.8420 5 6 1.7518 2.3877 -1.2777 6 6 2.6325 2.6131 -2.2254 7 16 4.2224 2.0738 -1.6429 8 6 3.7547 1.9430 0.1271 9 6 4.0992 3.2039 0.8773 10 8 3.3266 4.1390 0.8785 11 7 5.2655 3.2925 1.5467 12 6 5.5791 4.4397 2.2286 13 1 4.8916 5.2726 2.2291 14 6 6.7819 4.5313 2.9183 15 7 7.0822 5.6308 3.5724 16 14 7.9719 3.0914 2.9158 17 1 8.9056 3.2230 1.7686 18 1 8.7439 3.0851 4.1843 19 1 7.2121 1.8215 2.7924 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.7121 2.6446 -1.4172 24 1 2.4262 3.0503 -3.1912 25 1 4.2144 1.0716 0.5935 26 1 5.8831 2.5445 1.5459 27 1 7.9220 5.6947 4.0536 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725588466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:48 Heat of formation + Delta-G solvation = -8.050834 kcal Electronic energy + Delta-G solvation = -13441.174656 eV Core-core repulsion = 11031.269127 eV Total energy + Delta-G solvation = -2409.905529 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 245.028 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.76609 -35.99296 -34.03875 -31.84414 -30.11295 -29.05039 -25.91709 -23.85846 -20.31173 -19.39851 -18.51959 -17.24785 -16.80881 -15.71383 -15.13980 -14.79541 -14.05764 -13.79921 -13.65165 -13.57730 -12.99640 -12.71488 -12.45687 -12.05303 -12.03414 -11.67641 -11.24850 -10.82078 -10.65433 -10.11033 -10.07485 -9.70705 -9.67107 -8.87454 -8.30838 -7.70431 -7.24253 -6.43603 -3.93043 1.27399 1.68050 2.10327 2.38050 2.70707 2.99872 3.04593 3.11625 3.78618 4.01875 4.25530 4.56135 4.70845 5.04462 5.04793 5.14970 5.32537 5.42619 5.57635 5.69397 5.74052 6.05137 6.37266 7.41859 7.99101 8.43765 8.80240 9.27445 9.64356 10.68214 Molecular weight = 245.03amu Principal moments of inertia in cm(-1) A = 0.032874 B = 0.006889 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.521592 B = 4063.276479 C = 4176.172253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.241 6.241 3 C -0.010 4.010 4 H 0.118 0.882 5 C -0.161 4.161 6 C -0.109 4.109 7 S -0.148 6.148 8 C -0.052 4.052 9 C 0.460 3.540 10 O -0.566 6.566 11 N -0.567 5.567 12 C -0.303 4.303 13 H 0.123 0.877 14 C 0.047 3.953 15 N -0.870 5.870 16 Si 0.877 3.123 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.267 1.267 20 H 0.100 0.900 21 H 0.077 0.923 22 H 0.077 0.923 23 H 0.134 0.866 24 H 0.166 0.834 25 H 0.128 0.872 26 H 0.373 0.627 27 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.559 -11.395 -7.949 16.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.011 6.011 3 C -0.139 4.139 4 H 0.136 0.864 5 C -0.192 4.192 6 C -0.244 4.244 7 S 0.091 5.909 8 C -0.185 4.185 9 C 0.243 3.757 10 O -0.449 6.449 11 N -0.204 5.204 12 C -0.433 4.433 13 H 0.141 0.859 14 C -0.158 4.158 15 N -0.508 5.508 16 Si 0.703 3.297 17 H -0.192 1.192 18 H -0.198 1.198 19 H -0.193 1.193 20 H 0.118 0.882 21 H 0.096 0.904 22 H 0.096 0.904 23 H 0.152 0.848 24 H 0.184 0.816 25 H 0.146 0.854 26 H 0.206 0.794 27 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.118 -11.823 -8.365 16.137 hybrid contribution -0.979 0.287 0.676 1.224 sum -8.097 -11.536 -7.689 16.055 Atomic orbital electron populations 1.23383 0.94358 1.06256 1.05131 1.86805 1.07194 1.09324 1.97732 1.22497 0.96312 0.94201 1.00927 0.86397 1.22680 1.00758 1.01678 0.94132 1.24942 0.94596 1.02638 1.02261 1.86219 1.17212 1.83141 1.04300 1.24082 0.95751 1.02670 0.96008 1.18803 0.84202 0.88127 0.84602 1.90578 1.50072 1.38901 1.65391 1.42133 1.16859 1.16157 1.45243 1.19479 1.04706 0.93180 1.25906 0.85937 1.25062 0.97211 0.97195 0.96349 1.69618 1.24216 1.25891 1.31110 0.86691 0.81848 0.81996 0.79176 1.19184 1.19826 1.19264 0.88156 0.90383 0.90360 0.84836 0.81648 0.85439 0.79397 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.54 101.05 1.06 -0.12 15 2 S -0.24 -3.26 21.60 -107.50 -2.32 -5.58 15 3 C -0.01 -0.16 2.35 -27.47 -0.06 -0.22 15 4 H 0.12 2.02 7.58 -51.92 -0.39 1.63 15 5 C -0.16 -2.35 9.09 -36.63 -0.33 -2.68 15 6 C -0.11 -1.61 11.32 28.93 0.33 -1.28 15 7 S -0.15 -2.52 22.60 -107.50 -2.43 -4.95 15 8 C -0.05 -0.95 3.40 -26.94 -0.09 -1.04 15 9 C 0.46 10.57 6.99 -10.98 -0.08 10.49 15 10 O -0.57 -14.96 15.70 5.55 0.09 -14.87 15 11 N -0.57 -13.62 5.09 -10.96 -0.06 -13.68 15 12 C -0.30 -8.46 10.16 -14.93 -0.15 -8.61 15 13 H 0.12 3.88 7.39 -52.49 -0.39 3.49 15 14 C 0.05 1.26 5.50 -17.47 -0.10 1.16 15 15 N -0.87 -24.83 13.96 55.50 0.77 -24.05 15 16 Si 0.88 19.18 27.74 -169.99 -4.72 14.47 15 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 18 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 19 H -0.27 -5.38 6.52 56.52 0.37 -5.01 15 20 H 0.10 0.80 8.14 -51.92 -0.42 0.38 15 21 H 0.08 0.72 8.14 -51.92 -0.42 0.29 15 22 H 0.08 0.68 7.99 -51.92 -0.41 0.27 15 23 H 0.13 1.60 8.06 -52.48 -0.42 1.18 15 24 H 0.17 1.93 8.06 -52.49 -0.42 1.51 15 25 H 0.13 2.11 7.82 -51.93 -0.41 1.71 15 26 H 0.37 8.01 5.76 -40.82 -0.24 7.78 15 27 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15 LS Contribution 264.01 15.07 3.98 3.98 Total: -1.00 -30.91 264.01 -6.80 -37.71 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.70 Total: 9.27 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 0.58 Total: -2.29 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.72 Total: -37.73 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.09 Total: -14.87 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.72 Total: 14.47 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -4.75 Total: -10.53 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.91 -6.80 -37.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725588466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.659 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds