Wall clock time and date at job start Mon Mar 30 2020 05:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 103.00255 * 2 1 4 4 H 1.08998 * 109.46150 * 55.01131 * 3 2 1 5 5 C 1.49613 * 109.46288 * 295.07351 * 3 2 1 6 6 C 1.31318 * 118.46874 * 258.92027 * 5 3 2 7 7 S 1.77710 * 108.14037 * 359.81350 * 6 5 3 8 8 C 1.54780 * 109.46722 * 175.00231 * 3 2 1 9 9 C 1.50706 * 111.22742 * 211.91974 * 8 3 2 10 10 O 1.21293 * 119.99769 * 333.76765 * 9 8 3 11 11 N 1.34772 * 120.00186 * 153.76842 * 9 8 3 12 12 C 1.37095 * 120.00109 * 179.97438 * 11 9 8 13 13 H 1.08000 * 119.99966 * 359.97438 * 12 11 9 14 14 C 1.38953 * 120.00272 * 180.02562 * 12 11 9 15 15 N 1.31414 * 119.99928 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99736 * 0.02562 * 14 12 11 17 17 H 1.48492 * 109.46861 * 90.00171 * 16 14 12 18 18 H 1.48500 * 109.46717 * 210.00251 * 16 14 12 19 19 H 1.48499 * 109.47023 * 330.00121 * 16 14 12 20 20 H 1.09002 * 109.47220 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46848 * 299.99690 * 1 2 3 22 22 H 1.09000 * 109.47374 * 59.99971 * 1 2 3 23 23 H 1.08003 * 120.76516 * 78.94944 * 5 3 2 24 24 H 1.07995 * 125.92960 * 179.81350 * 6 5 3 25 25 H 1.09004 * 111.22945 * 336.29551 * 8 3 2 26 26 H 0.96997 * 119.99994 * 359.97438 * 11 9 8 27 27 H 0.96999 * 119.99241 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7297 2.2539 0.8420 5 6 1.7518 2.3877 -1.2777 6 6 2.6325 2.6131 -2.2254 7 16 4.2224 2.0738 -1.6429 8 6 3.7547 1.9430 0.1271 9 6 4.0992 3.2039 0.8773 10 8 3.3266 4.1390 0.8785 11 7 5.2655 3.2925 1.5467 12 6 5.5791 4.4397 2.2286 13 1 4.8916 5.2726 2.2291 14 6 6.7819 4.5313 2.9183 15 7 7.0822 5.6308 3.5724 16 14 7.9719 3.0914 2.9158 17 1 8.9056 3.2230 1.7686 18 1 8.7439 3.0851 4.1843 19 1 7.2121 1.8215 2.7924 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 0.7121 2.6446 -1.4172 24 1 2.4262 3.0503 -3.1912 25 1 4.2144 1.0716 0.5935 26 1 5.8831 2.5445 1.5459 27 1 7.9220 5.6947 4.0536 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725588466.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:02:48 Heat of formation + Delta-G solvation = -29.049071 kcal Electronic energy + Delta-G solvation = -13442.085208 eV Core-core repulsion = 11031.269127 eV Total energy + Delta-G solvation = -2410.816081 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 245.028 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.60083 -37.36849 -36.01600 -33.88989 -31.51624 -29.82762 -27.62493 -25.49641 -21.86956 -21.11222 -20.25002 -18.57188 -18.43454 -17.03561 -16.93435 -16.14709 -15.56731 -15.44325 -15.09248 -14.66398 -14.53747 -14.21690 -13.66161 -13.55615 -13.30150 -13.08244 -12.86947 -12.49217 -12.04355 -11.92968 -11.62043 -11.32155 -10.90433 -10.74292 -10.35369 -8.73294 -8.57016 -8.49499 -6.09996 0.06382 0.38272 1.06706 1.14272 1.27709 1.33490 1.39997 1.64033 1.99827 2.16636 2.60949 3.05062 3.17426 3.53637 3.86199 4.02672 4.26700 4.33823 4.36984 4.57006 4.88897 4.96661 5.22370 5.42817 5.83418 6.44013 6.73545 7.23046 7.73375 8.66835 Molecular weight = 245.03amu Principal moments of inertia in cm(-1) A = 0.032874 B = 0.006889 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.521592 B = 4063.276479 C = 4176.172253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 S -0.250 6.250 3 C -0.014 4.014 4 H 0.099 0.901 5 C -0.162 4.162 6 C -0.117 4.117 7 S -0.160 6.160 8 C -0.051 4.051 9 C 0.466 3.534 10 O -0.605 6.605 11 N -0.571 5.571 12 C -0.329 4.329 13 H 0.065 0.935 14 C -0.003 4.003 15 N -0.920 5.920 16 Si 0.953 3.047 17 H -0.256 1.256 18 H -0.267 1.267 19 H -0.236 1.236 20 H 0.122 0.878 21 H 0.082 0.918 22 H 0.092 0.908 23 H 0.164 0.836 24 H 0.198 0.802 25 H 0.145 0.855 26 H 0.388 0.612 27 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.045 -14.186 -9.225 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 S -0.020 6.020 3 C -0.143 4.143 4 H 0.118 0.882 5 C -0.192 4.192 6 C -0.251 4.251 7 S 0.079 5.921 8 C -0.183 4.183 9 C 0.249 3.751 10 O -0.490 6.490 11 N -0.210 5.210 12 C -0.458 4.458 13 H 0.083 0.917 14 C -0.204 4.204 15 N -0.560 5.560 16 Si 0.773 3.227 17 H -0.180 1.180 18 H -0.191 1.191 19 H -0.160 1.160 20 H 0.140 0.860 21 H 0.101 0.899 22 H 0.110 0.890 23 H 0.181 0.819 24 H 0.215 0.785 25 H 0.163 0.837 26 H 0.224 0.776 27 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.619 -14.622 -9.647 19.103 hybrid contribution -1.034 1.190 1.008 1.871 sum -8.653 -13.432 -8.639 18.164 Atomic orbital electron populations 1.23533 0.90768 1.07979 1.06110 1.86815 1.11078 1.06310 1.97792 1.22416 0.94349 0.96522 1.01060 0.88241 1.22964 1.02290 1.00746 0.93217 1.25338 0.92759 1.03250 1.03801 1.86236 1.19593 1.83747 1.02559 1.23948 0.97985 1.00004 0.96408 1.19730 0.82963 0.89225 0.83140 1.90550 1.51145 1.41075 1.66249 1.41962 1.17867 1.15562 1.45612 1.19039 1.04838 0.93536 1.28417 0.91737 1.26016 0.98756 1.00665 0.94946 1.69769 1.25320 1.28661 1.32226 0.85520 0.78913 0.78606 0.79634 1.18041 1.19150 1.15982 0.85958 0.89896 0.88954 0.81898 0.78506 0.83748 0.77634 0.90737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 10.54 113.37 1.19 -0.63 15 2 S -0.25 -6.11 21.60 -56.49 -1.22 -7.33 15 3 C -0.01 -0.42 2.35 30.12 0.07 -0.35 15 4 H 0.10 3.36 7.58 -2.39 -0.02 3.34 15 5 C -0.16 -4.32 9.09 25.00 0.23 -4.10 15 6 C -0.12 -3.15 11.32 67.47 0.76 -2.39 15 7 S -0.16 -5.18 22.60 -56.49 -1.28 -6.46 15 8 C -0.05 -1.79 3.40 30.46 0.10 -1.69 15 9 C 0.47 21.66 6.99 87.66 0.61 22.28 15 10 O -0.60 -33.05 15.70 -3.07 -0.05 -33.10 15 11 N -0.57 -27.75 5.09 -306.98 -1.56 -29.32 15 12 C -0.33 -19.18 10.16 84.04 0.85 -18.32 15 13 H 0.06 4.42 7.39 -2.91 -0.02 4.40 15 14 C 0.00 -0.17 5.50 84.93 0.47 0.30 15 15 N -0.92 -54.47 13.96 21.66 0.30 -54.17 15 16 Si 0.95 38.98 27.74 68.60 1.90 40.88 15 17 H -0.26 -10.04 7.11 99.48 0.71 -9.34 15 18 H -0.27 -10.62 7.11 99.48 0.71 -9.91 15 19 H -0.24 -8.39 6.52 99.48 0.65 -7.74 15 20 H 0.12 1.45 8.14 -2.39 -0.02 1.43 15 21 H 0.08 1.27 8.14 -2.39 -0.02 1.25 15 22 H 0.09 1.24 7.99 -2.39 -0.02 1.22 15 23 H 0.16 3.36 8.06 -2.91 -0.02 3.33 15 24 H 0.20 3.93 8.06 -2.91 -0.02 3.91 15 25 H 0.14 4.54 7.82 -2.38 -0.02 4.52 15 26 H 0.39 16.22 5.76 -92.71 -0.53 15.69 15 27 H 0.28 15.24 8.31 -92.71 -0.77 14.47 15 Total: -1.00 -70.81 264.01 2.99 -67.82 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.59 Total: 26.57 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 4.29 Total: -4.90 kcal Atomic # 7 Polarization: -82.22 SS G_CDS: -1.26 Total: -83.48 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -0.05 Total: -33.10 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.88 kcal Atomic # 16 Polarization: -11.29 SS G_CDS: -2.50 Total: -13.79 kcal Total: -70.81 2.99 -67.82 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725588466.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.773 kcal (2) G-P(sol) polarization free energy of solvation -70.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds