Wall clock time and date at job start Mon Mar 30 2020 03:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47270 * 274.24969 * 3 2 1 5 5 N 1.46497 * 109.47379 * 174.52319 * 4 3 2 6 6 C 1.46500 * 120.00120 * 82.99191 * 5 4 3 7 7 C 1.53003 * 117.49998 * 3.87713 * 6 5 4 8 8 C 1.52996 * 60.00072 * 252.51237 * 7 6 5 9 9 S 1.65604 * 119.99956 * 262.99265 * 5 4 3 10 10 O 1.42097 * 106.40032 * 203.53818 * 9 5 4 11 11 O 1.42101 * 106.40059 * 336.45867 * 9 5 4 12 12 C 1.76196 * 107.21683 * 89.99780 * 9 5 4 13 13 H 1.07994 * 120.00099 * 359.97438 * 12 9 5 14 14 C 1.37884 * 119.99716 * 180.02562 * 12 9 5 15 15 N 1.31512 * 119.99844 * 179.97438 * 14 12 9 16 16 Si 1.86793 * 120.00035 * 359.97438 * 14 12 9 17 17 H 1.48503 * 109.47161 * 90.00105 * 16 14 12 18 18 H 1.48499 * 109.47276 * 210.00315 * 16 14 12 19 19 H 1.48500 * 109.47215 * 330.00348 * 16 14 12 20 20 H 1.09005 * 109.47392 * 154.24837 * 3 2 1 21 21 H 1.09001 * 109.47213 * 34.24749 * 3 2 1 22 22 H 1.08994 * 109.47329 * 54.51617 * 4 3 2 23 23 H 1.09001 * 109.46638 * 294.52262 * 4 3 2 24 24 H 1.08999 * 115.55497 * 149.59055 * 6 5 4 25 25 H 1.08996 * 117.49721 * 0.02562 * 7 6 5 26 26 H 1.09003 * 117.49520 * 145.01950 * 7 6 5 27 27 H 1.09001 * 117.50276 * 252.50775 * 8 7 6 28 28 H 1.09002 * 117.51634 * 107.48531 * 8 7 6 29 29 H 0.96996 * 119.99829 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1180 -0.1060 1.4385 5 7 4.5771 -0.2370 1.4309 6 6 5.4192 0.9571 1.3253 7 6 4.7186 2.3173 1.3177 8 6 5.3363 1.7678 0.0304 9 16 5.2746 -1.7349 1.5415 10 8 6.5837 -1.5309 2.0552 11 8 4.3169 -2.5782 2.1668 12 6 5.4734 -2.3402 -0.1012 13 1 5.1543 -1.7399 -0.9402 14 6 6.0355 -3.5810 -0.3153 15 7 6.1834 -4.0330 -1.5414 16 14 6.5868 -4.6197 1.1360 17 1 5.4630 -5.4811 1.5835 18 1 7.7320 -5.4723 0.7278 19 1 7.0037 -3.7313 2.2505 20 1 2.9709 0.9264 -0.4465 21 1 2.9717 -0.8487 -0.5783 22 1 2.6772 -0.9808 1.9164 23 1 2.8366 0.7904 1.9912 24 1 6.3895 0.8933 1.8178 25 1 3.6312 2.3237 1.3917 26 1 5.2279 3.1485 1.8056 27 1 6.2520 2.2375 -0.3289 28 1 4.6555 1.4125 -0.7431 29 1 6.5792 -4.9057 -1.6921 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044510074.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:19 Heat of formation + Delta-G solvation = -44.404396 kcal Electronic energy + Delta-G solvation = -16094.732578 eV Core-core repulsion = 13338.216431 eV Total energy + Delta-G solvation = -2756.516147 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 244.067 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48682 -37.83857 -37.49850 -36.45490 -35.13167 -34.65856 -31.46128 -28.47564 -25.30661 -23.12559 -22.28293 -20.42091 -19.66693 -18.79674 -18.22329 -17.49513 -17.00601 -15.91911 -15.81803 -15.48194 -15.31044 -14.99187 -14.88440 -14.09333 -13.73164 -13.50473 -13.39455 -13.25768 -12.89483 -12.81976 -12.63212 -12.53902 -12.36245 -11.89765 -11.85205 -11.49522 -11.28296 -11.14223 -11.04254 -9.58110 -8.91079 -7.44133 0.09192 1.07813 1.16415 1.23905 1.71599 1.79207 1.92142 2.36884 2.48180 3.04163 3.09442 3.44292 3.85779 3.95090 4.06784 4.14881 4.27575 4.38180 4.42367 4.55584 4.88797 4.94458 5.06314 5.28750 5.39478 5.44771 5.47964 5.89033 6.12166 6.55998 6.61734 8.25513 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.023703 B = 0.010220 C = 0.008746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.979778 B = 2739.037325 C = 3200.520315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.244 3.756 3 C -0.055 4.055 4 C 0.115 3.885 5 N -0.962 5.962 6 C 0.047 3.953 7 C -0.153 4.153 8 C -0.197 4.197 9 S 2.691 3.309 10 O -1.025 7.025 11 O -1.027 7.027 12 C -1.027 5.027 13 H 0.119 0.881 14 C 0.113 3.887 15 N -0.851 5.851 16 Si 0.813 3.187 17 H -0.243 1.243 18 H -0.225 1.225 19 H -0.229 1.229 20 H 0.146 0.854 21 H 0.111 0.889 22 H 0.087 0.913 23 H 0.125 0.875 24 H 0.127 0.873 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.110 0.890 28 H 0.106 0.894 29 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.398 11.628 3.371 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.074 4.074 3 C -0.097 4.097 4 C -0.012 4.012 5 N -0.797 5.797 6 C -0.059 4.059 7 C -0.192 4.192 8 C -0.236 4.236 9 S 2.793 3.207 10 O -1.015 7.015 11 O -1.017 7.017 12 C -1.160 5.160 13 H 0.137 0.863 14 C -0.103 4.103 15 N -0.482 5.482 16 Si 0.631 3.369 17 H -0.167 1.167 18 H -0.147 1.147 19 H -0.151 1.151 20 H 0.164 0.836 21 H 0.129 0.871 22 H 0.105 0.895 23 H 0.143 0.857 24 H 0.144 0.856 25 H 0.135 0.865 26 H 0.140 0.860 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.796 11.042 4.069 12.095 hybrid contribution 0.734 -0.991 -0.596 1.370 sum -2.061 10.051 3.473 10.832 Atomic orbital electron populations 1.81208 1.14182 1.11034 1.09958 1.29175 0.95003 0.91351 0.91838 1.20181 0.80436 1.08200 1.00869 1.21396 0.78551 1.06170 0.95076 1.56632 1.12771 1.20921 1.89358 1.21694 0.96390 0.83540 1.04292 1.23443 1.01644 0.94043 1.00038 1.23644 1.04423 1.03477 0.92101 1.00789 0.72127 0.71911 0.75842 1.93413 1.40556 1.85644 1.81928 1.93378 1.63646 1.66187 1.78512 1.31002 1.54313 1.12967 1.17691 0.86251 1.25037 0.90777 0.96959 0.97572 1.69999 1.37154 1.19795 1.21228 0.87661 0.82537 0.84252 0.82425 1.16681 1.14690 1.15127 0.83627 0.87102 0.89461 0.85746 0.85576 0.86535 0.85984 0.87197 0.87611 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.31 18.54 20.01 0.37 -14.94 15 2 C 0.24 6.44 15.43 89.44 1.38 7.82 15 3 C -0.06 -1.28 5.61 28.79 0.16 -1.12 15 4 C 0.11 2.98 5.03 86.38 0.43 3.41 15 5 N -0.96 -31.35 3.13 -493.40 -1.54 -32.89 15 6 C 0.05 1.26 6.34 44.99 0.29 1.54 15 7 C -0.15 -2.52 9.62 30.59 0.29 -2.23 15 8 C -0.20 -4.05 9.88 30.59 0.30 -3.75 15 9 S 2.69 124.01 4.20 -56.49 -0.24 123.77 15 10 O -1.03 -51.52 14.85 -128.00 -1.90 -53.42 15 11 O -1.03 -51.09 15.37 -128.00 -1.97 -53.06 15 12 C -1.03 -53.20 10.29 67.74 0.70 -52.50 15 13 H 0.12 6.09 8.00 -2.91 -0.02 6.07 15 14 C 0.11 6.22 5.47 84.66 0.46 6.68 15 15 N -0.85 -47.27 13.96 21.45 0.30 -46.97 15 16 Si 0.81 39.74 26.54 68.60 1.82 41.56 15 17 H -0.24 -11.66 7.11 99.48 0.71 -10.95 15 18 H -0.22 -9.79 7.11 99.48 0.71 -9.09 15 19 H -0.23 -11.48 5.61 99.48 0.56 -10.92 15 20 H 0.15 2.39 5.65 -2.38 -0.01 2.38 15 21 H 0.11 3.02 8.09 -2.39 -0.02 3.00 15 22 H 0.09 2.59 6.88 -2.39 -0.02 2.57 15 23 H 0.12 2.24 6.36 -2.39 -0.02 2.23 15 24 H 0.13 3.67 7.45 -2.39 -0.02 3.65 15 25 H 0.12 1.53 6.24 -2.39 -0.01 1.52 15 26 H 0.12 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 15 28 H 0.11 2.07 5.94 -2.39 -0.01 2.05 15 29 H 0.29 14.61 8.31 -92.71 -0.77 13.84 15 Total: -1.00 -68.11 263.28 1.89 -66.23 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 1.03 Total: 9.87 kcal Atomic # 6 Polarization: -44.16 SS G_CDS: 4.02 Total: -40.14 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -0.87 Total: -94.80 kcal Atomic # 8 Polarization: -102.61 SS G_CDS: -3.87 Total: -106.48 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.82 Total: 41.56 kcal Atomic # 16 Polarization: 124.01 SS G_CDS: -0.24 Total: 123.77 kcal Total: -68.11 1.89 -66.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044510074.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.822 kcal (2) G-P(sol) polarization free energy of solvation -68.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds