Wall clock time and date at job start Mon Mar 30 2020 03:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46505 * 109.46748 * 2 1 4 4 C 1.37102 * 119.99711 * 93.43692 * 3 2 1 5 5 H 1.07995 * 120.00090 * 218.94054 * 4 3 2 6 6 C 1.38956 * 119.99760 * 38.93906 * 4 3 2 7 7 N 1.31406 * 120.00169 * 19.71532 * 6 4 3 8 8 Si 1.86799 * 119.99470 * 199.71196 * 6 4 3 9 9 H 1.48499 * 109.47394 * 60.00622 * 8 6 4 10 10 H 1.48504 * 109.46816 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47516 * 299.99970 * 8 6 4 12 12 C 1.34766 * 120.00215 * 273.43152 * 3 2 1 13 13 O 1.21300 * 120.00319 * 179.97438 * 12 3 2 14 14 C 1.50702 * 120.00159 * 0.02562 * 12 3 2 15 15 H 1.08999 * 109.01898 * 40.69868 * 14 12 3 16 16 C 1.53424 * 109.04064 * 281.75069 * 14 12 3 17 17 S 1.82063 * 103.94043 * 239.40545 * 16 14 12 18 18 C 1.76708 * 95.97575 * 0.02562 * 17 16 14 19 19 O 1.21615 * 125.20419 * 179.97438 * 18 17 16 20 20 N 1.32800 * 109.54813 * 0.06323 * 18 17 16 21 21 H 1.08997 * 109.47210 * 59.99696 * 1 2 3 22 22 H 1.09002 * 109.46637 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47337 * 299.99552 * 1 2 3 24 24 H 1.08997 * 109.47210 * 120.00304 * 2 1 3 25 25 H 1.09000 * 109.47296 * 240.00764 * 2 1 3 26 26 H 0.96994 * 119.99849 * 180.02562 * 7 6 4 27 27 H 1.09001 * 110.53672 * 358.02198 * 16 14 12 28 28 H 1.09005 * 110.53238 * 120.79149 * 16 14 12 29 29 H 0.96999 * 120.47322 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3139 2.0038 1.1852 5 1 2.0665 3.0458 1.3243 6 6 2.9317 1.2940 2.2076 7 7 3.5761 0.1809 1.9384 8 14 2.8464 1.9224 3.9647 9 1 1.4267 2.0050 4.3925 10 1 3.5801 0.9915 4.8594 11 1 3.4650 3.2703 4.0390 12 6 2.1770 2.0399 -1.1650 13 8 2.5808 3.1837 -1.1650 14 6 1.8517 1.3558 -2.4678 15 1 0.9391 0.7727 -2.3446 16 6 3.0028 0.4116 -2.8384 17 16 3.5733 1.0283 -4.4536 18 6 2.4095 2.3533 -4.5661 19 8 2.3296 3.1397 -5.4903 20 7 1.6372 2.3593 -3.4857 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8899 24 1 1.8934 -0.5139 0.8899 25 1 1.8934 -0.5137 -0.8900 26 1 4.0070 -0.3148 2.6522 27 1 3.8026 0.4756 -2.1005 28 1 2.6432 -0.6137 -2.9259 29 1 0.9398 3.0256 -3.3833 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155348772.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:34 Heat of formation + Delta-G solvation = -56.975994 kcal Electronic energy + Delta-G solvation = -16105.284631 eV Core-core repulsion = 13348.223339 eV Total energy + Delta-G solvation = -2757.061292 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 244.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03836 -38.47903 -36.00874 -35.06811 -32.31921 -30.30569 -29.69986 -26.04165 -24.58483 -22.68284 -21.91592 -19.79992 -17.58795 -17.21731 -17.14782 -16.57956 -15.25956 -14.90604 -14.64517 -14.31510 -13.90184 -13.82042 -13.24477 -13.10550 -12.86407 -12.39146 -11.92299 -11.72221 -11.22883 -11.17579 -10.89770 -10.60398 -10.49243 -10.30699 -9.77742 -9.65972 -9.13131 -8.59510 -8.06518 -7.69212 -6.52466 -4.19740 1.35022 1.97708 2.40929 3.06440 3.15986 3.18047 3.36870 3.53133 3.99102 4.43960 4.53574 4.81752 5.00021 5.26621 5.46046 5.68144 5.69764 5.97885 6.05306 6.25819 6.56562 6.66737 6.88059 7.00370 7.40872 7.85152 8.04109 8.26436 8.94306 9.13652 9.70732 10.51614 Molecular weight = 244.07amu Principal moments of inertia in cm(-1) A = 0.037485 B = 0.007089 C = 0.006940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.784208 B = 3949.001627 C = 4033.692733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.091 3.909 3 N -0.427 5.427 4 C -0.314 4.314 5 H 0.092 0.908 6 C 0.043 3.957 7 N -0.866 5.866 8 Si 0.921 3.079 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.441 3.559 13 O -0.562 6.562 14 C 0.110 3.890 15 H 0.110 0.890 16 C -0.082 4.082 17 S -0.180 6.180 18 C 0.554 3.446 19 O -0.500 6.500 20 N -0.691 5.691 21 H 0.041 0.959 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.113 0.887 25 H 0.050 0.950 26 H 0.271 0.729 27 H 0.126 0.874 28 H 0.122 0.878 29 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.901 -5.663 -3.885 8.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.033 4.033 3 N -0.146 5.146 4 C -0.441 4.441 5 H 0.109 0.891 6 C -0.163 4.163 7 N -0.503 5.503 8 Si 0.747 3.253 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.226 3.774 13 O -0.444 6.444 14 C -0.001 4.001 15 H 0.128 0.872 16 C -0.231 4.231 17 S 0.041 5.959 18 C 0.231 3.769 19 O -0.379 6.379 20 N -0.347 5.347 21 H 0.060 0.940 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.130 0.870 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.140 0.860 29 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -3.627 -5.320 -5.005 8.156 hybrid contribution -1.178 0.705 1.809 2.271 sum -4.805 -4.616 -3.196 7.390 Atomic orbital electron populations 1.22234 0.97806 1.00769 1.01698 1.21685 0.92054 0.85390 1.04142 1.43473 1.55082 1.11850 1.04181 1.19388 1.38516 0.97525 0.88703 0.89080 1.25414 0.93731 0.96413 1.00728 1.69874 1.29831 1.16890 1.33670 0.86084 0.78635 0.79018 0.81546 1.19740 1.20823 1.19603 1.20344 0.83946 0.88728 0.84391 1.90599 1.49408 1.18244 1.86177 1.21082 0.99970 0.89812 0.89253 0.87225 1.24216 1.00696 1.01840 0.96375 1.87139 1.46926 1.36230 1.25568 1.21515 0.83778 0.87686 0.83957 1.90860 1.69858 1.41936 1.35248 1.45416 1.36831 1.33949 1.18479 0.94023 0.92656 0.92001 0.86967 0.93120 0.91853 0.85573 0.85997 0.74556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.05 37.16 0.37 -2.13 15 2 C 0.09 1.67 5.30 -4.04 -0.02 1.65 15 3 N -0.43 -9.51 2.52 -114.81 -0.29 -9.80 15 4 C -0.31 -7.96 8.88 -14.93 -0.13 -8.09 15 5 H 0.09 2.45 7.79 -52.49 -0.41 2.04 15 6 C 0.04 1.04 4.95 -17.47 -0.09 0.95 15 7 N -0.87 -21.27 11.51 55.50 0.64 -20.63 15 8 Si 0.92 19.23 29.60 -169.99 -5.03 14.20 15 9 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 10 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 11 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 12 C 0.44 9.61 6.54 -10.99 -0.07 9.54 15 13 O -0.56 -14.76 16.42 5.54 0.09 -14.67 15 14 C 0.11 1.79 3.05 -69.91 -0.21 1.58 15 15 H 0.11 1.48 5.80 -51.93 -0.30 1.18 15 16 C -0.08 -1.22 5.72 37.38 0.21 -1.00 15 17 S -0.18 -2.92 23.25 -107.50 -2.50 -5.42 15 18 C 0.55 10.13 8.77 53.18 0.47 10.60 15 19 O -0.50 -10.37 18.05 5.26 0.10 -10.28 15 20 N -0.69 -11.61 4.73 -59.67 -0.28 -11.89 15 21 H 0.04 0.57 6.77 -51.93 -0.35 0.22 15 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 23 H 0.06 1.02 8.14 -51.93 -0.42 0.59 15 24 H 0.11 2.33 5.61 -51.93 -0.29 2.04 15 25 H 0.05 0.78 5.54 -51.93 -0.29 0.50 15 26 H 0.27 6.34 8.31 -40.82 -0.34 6.00 15 27 H 0.13 2.13 7.64 -51.93 -0.40 1.73 15 28 H 0.12 1.36 7.84 -51.93 -0.41 0.95 15 29 H 0.41 6.52 8.94 -40.82 -0.36 6.16 15 LS Contribution 261.16 15.07 3.94 3.94 Total: -1.00 -30.16 261.16 -5.60 -35.76 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -2.79 Total: 5.69 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 0.53 Total: 13.09 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.07 Total: -42.32 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: 0.19 Total: -24.95 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -2.50 Total: -5.42 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.16 -5.60 -35.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155348772.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.214 kcal (2) G-P(sol) polarization free energy of solvation -30.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds