Wall clock time and date at job start Mon Mar 30 2020 04:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35863 * 117.00071 * 2 1 4 4 C 1.40416 * 120.77753 * 90.00008 * 3 2 1 5 5 N 1.39048 * 120.34051 * 0.02562 * 4 3 2 6 6 C 1.39485 * 119.32445 * 180.02562 * 4 3 2 7 7 N 1.31367 * 120.91647 * 359.97438 * 6 4 3 8 8 C 1.33740 * 121.70405 * 0.02562 * 7 6 4 9 9 C 1.41088 * 119.70806 * 180.02562 * 8 7 6 10 10 H 1.08001 * 119.99880 * 195.86457 * 9 8 7 11 11 C 1.39963 * 120.00476 * 15.86304 * 9 8 7 12 12 N 1.30808 * 119.99670 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00276 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47013 * 60.00097 * 13 11 9 15 15 H 1.48501 * 109.46798 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46971 * 299.99780 * 13 11 9 17 17 C 1.38203 * 120.78218 * 269.72430 * 3 2 1 18 18 C 1.50696 * 120.48394 * 359.97438 * 17 3 2 19 19 F 1.39901 * 109.47501 * 218.27589 * 18 17 3 20 20 F 1.39895 * 109.47349 * 338.27663 * 18 17 3 21 21 H 1.08995 * 109.47331 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46949 * 299.99792 * 1 2 3 23 23 H 1.08996 * 109.46895 * 59.99884 * 1 2 3 24 24 H 0.96996 * 119.99942 * 0.02562 * 5 4 3 25 25 H 0.96997 * 119.99770 * 179.97438 * 5 4 3 26 26 H 1.08000 * 119.54261 * 179.97438 * 6 4 3 27 27 H 0.96993 * 120.00012 * 180.02562 * 12 11 9 28 28 H 1.08997 * 109.47338 * 98.27955 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 2.3720 1.8507 1.2064 5 7 2.0676 1.2521 2.4239 6 6 3.0046 3.0934 1.1710 7 7 3.2980 3.6691 0.0272 8 6 3.0051 3.0945 -1.1444 9 6 3.3399 3.7503 -2.3479 10 1 2.8917 3.4337 -3.2781 11 6 4.2529 4.8111 -2.3363 12 7 4.7961 5.1942 -1.2098 13 14 4.6955 5.6798 -3.9297 14 1 3.4707 6.2671 -4.5301 15 1 5.6753 6.7598 -3.6489 16 1 5.2919 4.7036 -4.8765 17 6 2.3720 1.8381 -1.1873 18 6 2.0493 1.1895 -2.5087 19 9 3.0917 1.4261 -3.4113 20 9 1.8944 -0.1888 -2.3261 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6280 0.3877 2.4428 25 1 2.2955 1.6986 3.2543 26 1 3.2567 3.5891 2.0968 27 1 5.4285 5.9296 -1.2017 28 1 1.1244 1.6099 -2.9036 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238427817.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:56 Heat of formation + Delta-G solvation = -120.325416 kcal Electronic energy + Delta-G solvation = -18164.895514 eV Core-core repulsion = 14851.246798 eV Total energy + Delta-G solvation = -3313.648716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.62297 -47.64316 -40.81476 -38.50760 -35.99450 -34.56241 -32.70614 -30.35585 -28.17180 -27.10516 -26.20397 -23.19645 -22.52679 -19.79093 -18.81137 -18.22971 -17.90194 -17.69260 -17.02113 -16.72966 -16.29714 -15.90477 -15.62505 -15.05818 -14.84446 -14.45676 -14.18174 -14.07427 -13.83747 -13.43765 -12.94553 -12.88961 -12.51304 -12.32756 -12.01602 -11.83896 -11.68973 -10.85546 -10.73854 -9.92493 -9.68059 -8.48496 -8.33235 -6.24256 0.56125 0.97185 1.43466 1.54056 1.57009 2.27264 2.73526 3.02732 3.14890 3.35578 3.68213 3.78334 4.15015 4.29435 4.33379 4.44027 4.55169 4.69334 4.76378 4.92658 5.23212 5.29145 5.42248 5.74099 6.26331 6.54393 6.66090 6.90512 7.05367 7.30899 8.06125 8.48917 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.026902 B = 0.010074 C = 0.007607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.563917 B = 2778.844276 C = 3679.713551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.337 6.337 3 C 0.108 3.892 4 C 0.025 3.975 5 N -0.867 5.867 6 C 0.074 3.926 7 N -0.482 5.482 8 C 0.233 3.767 9 C -0.464 4.464 10 H 0.096 0.904 11 C 0.029 3.971 12 N -0.771 5.771 13 Si 0.979 3.021 14 H -0.255 1.255 15 H -0.269 1.269 16 H -0.264 1.264 17 C -0.339 4.339 18 C 0.340 3.660 19 F -0.209 7.209 20 F -0.206 7.206 21 H 0.115 0.885 22 H 0.048 0.952 23 H 0.036 0.964 24 H 0.396 0.604 25 H 0.401 0.599 26 H 0.149 0.851 27 H 0.279 0.721 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.747 -4.510 1.773 8.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.254 6.254 3 C 0.053 3.947 4 C -0.080 4.080 5 N -0.413 5.413 6 C -0.096 4.096 7 N -0.194 5.194 8 C 0.107 3.893 9 C -0.495 4.495 10 H 0.114 0.886 11 C -0.191 4.191 12 N -0.394 5.394 13 Si 0.800 3.200 14 H -0.179 1.179 15 H -0.194 1.194 16 H -0.188 1.188 17 C -0.346 4.346 18 C 0.286 3.714 19 F -0.190 7.190 20 F -0.188 7.188 21 H 0.133 0.867 22 H 0.066 0.934 23 H 0.055 0.945 24 H 0.224 0.776 25 H 0.230 0.770 26 H 0.167 0.833 27 H 0.089 0.911 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.048 -3.692 1.741 7.296 hybrid contribution -0.155 -0.459 -0.140 0.504 sum -6.202 -4.150 1.601 7.633 Atomic orbital electron populations 1.23088 0.78491 1.04092 1.00365 1.85983 1.20750 1.24329 1.94314 1.17898 0.99784 0.86519 0.90527 1.18793 1.06397 0.95739 0.87087 1.41432 1.71973 1.24667 1.03219 1.22773 0.97488 0.91801 0.97537 1.68570 1.19545 1.34125 0.97121 1.18348 0.90390 0.88126 0.92401 1.19929 1.22174 1.13576 0.93836 0.88627 1.26854 0.94747 0.96709 1.00826 1.70131 1.19381 1.21260 1.28633 0.85298 0.79136 0.77916 0.77635 1.17923 1.19361 1.18844 1.21331 1.19723 0.99588 0.93973 1.19846 0.89067 0.76082 0.86433 1.92918 1.62732 1.94013 1.69370 1.92928 1.96094 1.33782 1.95971 0.86659 0.93361 0.94490 0.77629 0.77015 0.83348 0.91059 0.86122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.90 113.37 1.24 2.20 15 2 O -0.34 -12.87 7.65 -92.01 -0.70 -13.57 15 3 C 0.11 4.78 5.70 22.79 0.13 4.91 15 4 C 0.02 1.03 6.82 38.83 0.26 1.30 15 5 N -0.87 -26.79 9.06 -50.47 -0.46 -27.25 15 6 C 0.07 3.39 11.05 85.06 0.94 4.33 15 7 N -0.48 -26.19 8.03 -188.65 -1.51 -27.70 15 8 C 0.23 12.71 6.46 40.17 0.26 12.97 15 9 C -0.46 -24.99 7.85 23.39 0.18 -24.81 15 10 H 0.10 4.87 5.84 -2.91 -0.02 4.85 15 11 C 0.03 1.50 5.48 85.26 0.47 1.96 15 12 N -0.77 -41.72 11.60 21.83 0.25 -41.46 15 13 Si 0.98 38.99 29.56 68.60 2.03 41.02 15 14 H -0.26 -9.66 7.11 99.48 0.71 -8.95 15 15 H -0.27 -10.17 7.11 99.48 0.71 -9.46 15 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 15 17 C -0.34 -16.50 5.79 -19.26 -0.11 -16.61 15 18 C 0.34 14.58 5.14 71.23 0.37 14.95 15 19 F -0.21 -9.78 14.46 44.97 0.65 -9.13 15 20 F -0.21 -8.58 14.90 44.97 0.67 -7.91 15 21 H 0.12 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 15 24 H 0.40 11.04 8.26 -92.71 -0.77 10.27 15 25 H 0.40 10.18 8.84 -92.71 -0.82 9.36 15 26 H 0.15 5.90 8.06 -2.91 -0.02 5.87 15 27 H 0.28 13.74 8.30 -92.71 -0.77 12.97 15 28 H 0.12 4.38 8.14 -2.39 -0.02 4.36 15 Total: -1.00 -64.83 253.63 4.31 -60.52 By element: Atomic # 1 Polarization: 24.65 SS G_CDS: -0.35 Total: 24.30 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 3.74 Total: 1.19 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -1.72 Total: -96.41 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -0.70 Total: -13.57 kcal Atomic # 9 Polarization: -18.36 SS G_CDS: 1.32 Total: -17.04 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 2.03 Total: 41.02 kcal Total: -64.83 4.31 -60.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238427817.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.803 kcal (2) G-P(sol) polarization free energy of solvation -64.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds