Wall clock time and date at job start Mon Mar 30 2020 03:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30740 * 1 3 3 Si 1.86805 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47353 * 273.28622 * 3 2 1 5 5 H 1.48500 * 109.46657 * 33.28971 * 3 2 1 6 6 H 1.48504 * 109.46962 * 153.28445 * 3 2 1 7 7 C 1.40027 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99878 * 344.54271 * 7 2 1 9 9 C 1.41544 * 120.00193 * 164.53875 * 7 2 1 10 10 C 1.40857 * 121.00306 * 331.63281 * 9 7 2 11 11 C 1.38426 * 118.80980 * 180.02562 * 10 9 7 12 12 O 1.35704 * 119.56226 * 180.02562 * 11 10 9 13 13 N 1.32397 * 120.86950 * 359.73894 * 11 10 9 14 14 C 1.32078 * 122.24251 * 0.53560 * 13 11 10 15 15 C 1.50699 * 119.45816 * 179.74731 * 14 13 11 16 16 N 1.46895 * 109.47475 * 96.12364 * 15 14 13 17 17 C 1.37610 * 121.08936 * 359.46644 * 14 13 11 18 18 C 1.50701 * 120.50508 * 180.27982 * 17 14 13 19 19 F 1.39899 * 109.47262 * 129.25197 * 18 17 14 20 20 F 1.39901 * 109.47214 * 249.24674 * 18 17 14 21 21 H 0.97008 * 119.99867 * 359.97438 * 1 2 3 22 22 H 1.07999 * 120.59013 * 0.04119 * 10 9 7 23 23 H 0.96697 * 114.00051 * 90.00244 * 12 11 10 24 24 H 1.09008 * 109.46535 * 336.12692 * 15 14 13 25 25 H 1.08994 * 109.47314 * 216.12616 * 15 14 13 26 26 H 1.00897 * 111.00752 * 180.02562 * 16 15 14 27 27 H 1.00907 * 111.00126 * 303.95451 * 16 15 14 28 28 H 1.09001 * 109.47495 * 9.24706 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 2.4195 2.0866 -1.3977 5 1 1.4753 2.6315 0.7685 6 1 3.5720 1.4211 0.6294 7 6 2.0076 -1.2127 -0.0005 8 1 1.4968 -2.1312 0.2483 9 6 3.3846 -1.2347 -0.3273 10 6 3.9414 -0.2694 -1.1889 11 6 5.2935 -0.3341 -1.4782 12 8 5.8459 0.5884 -2.3060 13 7 6.0559 -1.2809 -0.9535 14 6 5.5729 -2.2075 -0.1457 15 6 6.4968 -3.2595 0.4116 16 7 6.9487 -2.8554 1.7496 17 6 4.2410 -2.2249 0.1999 18 6 3.7052 -3.2847 1.1276 19 9 2.9769 -2.6787 2.1569 20 9 2.8705 -4.1510 0.4134 21 1 -0.4850 0.8401 0.0004 22 1 3.3244 0.5074 -1.6158 23 1 6.1794 1.3745 -1.8522 24 1 7.3597 -3.3701 -0.2452 25 1 5.9671 -4.2097 0.4787 26 1 7.5703 -3.5447 2.1451 27 1 7.3864 -1.9465 1.7243 28 1 4.5353 -3.8486 1.5532 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238593691.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:40 Heat of formation + Delta-G solvation = -145.119105 kcal Electronic energy + Delta-G solvation = -18071.832040 eV Core-core repulsion = 14757.108189 eV Total energy + Delta-G solvation = -3314.723851 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.63352 -47.61944 -41.08221 -38.24241 -36.49152 -35.12313 -33.50756 -31.68270 -28.39778 -26.96282 -25.74410 -22.78813 -22.55660 -19.97433 -18.75763 -18.52497 -18.16923 -17.90341 -17.25559 -16.81683 -16.57737 -15.85055 -15.55173 -15.33029 -14.68829 -14.55826 -14.32556 -14.04665 -13.71642 -13.37471 -13.22195 -13.16846 -13.01574 -12.76429 -12.47616 -12.00312 -11.62998 -11.21921 -10.35199 -10.13453 -9.70228 -9.58066 -9.10474 -6.87611 0.18857 0.54618 1.18029 1.32518 1.39254 1.99412 2.33892 2.84030 3.13194 3.21564 3.58030 3.77286 3.87937 3.95921 4.21402 4.45691 4.47925 4.61280 4.71055 4.89986 4.94571 5.22918 5.41903 5.76001 6.01326 6.12499 6.27291 6.50561 6.65153 6.79432 7.25845 7.95152 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.019616 B = 0.012997 C = 0.008961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.029318 B = 2153.851776 C = 3124.036877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.049 3.951 3 Si 0.972 3.028 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.254 1.254 7 C -0.441 4.441 8 H 0.069 0.931 9 C 0.121 3.879 10 C -0.319 4.319 11 C 0.337 3.663 12 O -0.495 6.495 13 N -0.590 5.590 14 C 0.200 3.800 15 C 0.113 3.887 16 N -0.844 5.844 17 C -0.322 4.322 18 C 0.332 3.668 19 F -0.215 7.215 20 F -0.225 7.225 21 H 0.303 0.697 22 H 0.117 0.883 23 H 0.412 0.588 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.362 0.638 27 H 0.347 0.653 28 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.501 -0.725 2.715 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.171 4.171 3 Si 0.795 3.205 4 H -0.178 1.178 5 H -0.195 1.195 6 H -0.178 1.178 7 C -0.470 4.470 8 H 0.087 0.913 9 C 0.113 3.887 10 C -0.343 4.343 11 C 0.164 3.836 12 O -0.304 6.304 13 N -0.315 5.315 14 C 0.064 3.936 15 C -0.018 4.018 16 N -0.377 5.377 17 C -0.329 4.329 18 C 0.279 3.721 19 F -0.196 7.196 20 F -0.207 7.207 21 H 0.114 0.886 22 H 0.135 0.865 23 H 0.271 0.729 24 H 0.077 0.923 25 H 0.117 0.883 26 H 0.178 0.822 27 H 0.160 0.840 28 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 10.143 -1.048 2.248 10.442 hybrid contribution -0.383 1.036 -0.127 1.112 sum 9.761 -0.012 2.121 9.989 Atomic orbital electron populations 1.69629 1.09237 1.32501 1.32484 1.26993 0.95579 1.04605 0.89899 0.85407 0.79424 0.75861 0.79805 1.17751 1.19517 1.17838 1.19625 0.92468 0.96088 1.38817 0.91255 1.17721 0.92808 0.90159 0.87977 1.21905 0.96518 1.07429 1.08446 1.18835 0.87624 0.89243 0.87929 1.84641 1.80344 1.31551 1.33855 1.66872 1.40005 1.07776 1.16851 1.20561 0.90607 0.92553 0.89886 1.20649 0.96468 0.94333 0.90339 1.58625 1.49400 1.08642 1.21039 1.21052 0.95646 1.05703 1.10474 1.20397 0.85904 0.85384 0.80441 1.92922 1.81009 1.85270 1.60408 1.92910 1.76212 1.71305 1.80272 0.88570 0.86513 0.72878 0.92321 0.88341 0.82195 0.84022 0.83474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.97 13.92 21.84 0.30 -42.66 15 2 C 0.05 2.55 5.46 85.29 0.47 3.02 15 3 Si 0.97 41.18 24.44 68.60 1.68 42.85 15 4 H -0.25 -10.06 6.64 99.48 0.66 -9.40 15 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 6 H -0.25 -11.03 6.74 99.48 0.67 -10.36 15 7 C -0.44 -24.40 8.21 23.52 0.19 -24.20 15 8 H 0.07 4.21 6.74 -2.91 -0.02 4.19 15 9 C 0.12 6.18 5.16 -21.11 -0.11 6.07 15 10 C -0.32 -15.23 7.14 22.96 0.16 -15.06 15 11 C 0.34 14.64 7.73 84.65 0.65 15.29 15 12 O -0.49 -18.01 13.55 -90.24 -1.22 -19.24 15 13 N -0.59 -24.66 10.27 -297.42 -3.05 -27.71 15 14 C 0.20 7.90 6.28 42.37 0.27 8.16 15 15 C 0.11 3.17 6.17 85.56 0.53 3.70 15 16 N -0.84 -19.91 9.45 -190.01 -1.80 -21.70 15 17 C -0.32 -14.59 5.46 -19.30 -0.11 -14.70 15 18 C 0.33 13.79 4.62 71.24 0.33 14.12 15 19 F -0.21 -10.02 15.89 44.97 0.71 -9.30 15 20 F -0.23 -10.07 16.59 44.97 0.75 -9.32 15 21 H 0.30 14.10 8.29 -92.70 -0.77 13.33 15 22 H 0.12 5.48 4.38 -2.91 -0.01 5.47 15 23 H 0.41 10.35 9.06 -74.06 -0.67 9.68 15 24 H 0.06 1.51 8.14 -2.38 -0.02 1.50 15 25 H 0.10 2.45 6.63 -2.39 -0.02 2.44 15 26 H 0.36 5.89 9.08 -89.70 -0.81 5.07 15 27 H 0.35 8.36 8.99 -89.69 -0.81 7.55 15 28 H 0.15 4.79 5.72 -2.39 -0.01 4.78 15 Total: -1.00 -64.89 247.87 -1.35 -66.24 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -1.10 Total: 24.45 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 2.39 Total: -3.59 kcal Atomic # 7 Polarization: -87.53 SS G_CDS: -4.55 Total: -92.08 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -1.22 Total: -19.24 kcal Atomic # 9 Polarization: -20.09 SS G_CDS: 1.46 Total: -18.63 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 1.68 Total: 42.85 kcal Total: -64.89 -1.35 -66.24 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238593691.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.881 kcal (2) G-P(sol) polarization free energy of solvation -64.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds