Wall clock time and date at job start Mon Mar 30 2020 03:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47573 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47232 * 299.99775 * 3 2 1 6 6 H 1.48501 * 109.47127 * 59.99512 * 3 2 1 7 7 C 1.40022 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.41443 * 119.99926 * 0.02562 * 7 2 1 10 10 N 1.33698 * 119.80249 * 359.97438 * 9 7 2 11 11 C 1.31473 * 121.65416 * 179.97438 * 10 9 7 12 12 C 1.50703 * 119.46264 * 180.02562 * 11 10 9 13 13 F 1.39894 * 109.47102 * 120.00216 * 12 11 10 14 14 F 1.39904 * 109.47136 * 240.00568 * 12 11 10 15 15 C 1.38567 * 121.07914 * 359.97438 * 11 10 9 16 16 C 1.39482 * 119.49493 * 359.80396 * 15 11 10 17 17 O 1.35758 * 120.76813 * 180.23663 * 16 15 11 18 18 C 1.38841 * 118.47011 * 0.43627 * 16 15 11 19 19 C 1.50697 * 120.54745 * 179.80275 * 18 16 15 20 20 N 1.46905 * 109.47066 * 269.72052 * 19 18 16 21 21 H 0.97003 * 119.99873 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47129 * 0.02562 * 12 11 10 23 23 H 1.08001 * 120.25356 * 180.02562 * 15 11 10 24 24 H 0.96698 * 114.00577 * 270.20429 * 17 16 15 25 25 H 1.09001 * 109.47558 * 149.72215 * 19 18 16 26 26 H 1.08998 * 109.47216 * 29.71878 * 19 18 16 27 27 H 1.00901 * 110.99869 * 56.04737 * 20 19 18 28 28 H 1.00896 * 110.99543 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3004 -2.4376 0.0005 10 7 -0.0366 -2.4330 0.0005 11 6 -0.7304 -3.5497 0.0000 12 6 -2.2361 -3.4869 -0.0005 13 9 -2.7291 -4.1262 -1.1430 14 9 -2.7300 -4.1265 1.1415 15 6 -0.0998 -4.7836 -0.0010 16 6 1.2937 -4.8426 -0.0058 17 8 1.9382 -6.0374 -0.0117 18 6 2.0067 -3.6512 0.0000 19 6 3.5136 -3.6604 -0.0002 20 7 4.0035 -3.6635 1.3847 21 1 -0.4850 0.8401 -0.0004 22 1 -2.5563 -2.4450 -0.0009 23 1 -0.6829 -5.6927 -0.0019 24 1 2.1251 -6.3881 0.8699 25 1 3.8823 -2.7726 -0.5140 26 1 3.8714 -4.5526 -0.5142 27 1 3.6234 -4.4427 1.9010 28 1 5.0121 -3.6701 1.4114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238623430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:12 Heat of formation + Delta-G solvation = -115.599864 kcal Electronic energy + Delta-G solvation = -17687.368107 eV Core-core repulsion = 14373.924306 eV Total energy + Delta-G solvation = -3313.443801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.28564 -46.28680 -39.06510 -36.46955 -34.34791 -33.55662 -30.51184 -29.55759 -26.62766 -25.96303 -22.96114 -21.77113 -20.11344 -18.31439 -17.26831 -16.53324 -16.12684 -16.04661 -15.45594 -15.16711 -14.77422 -13.98902 -13.78380 -13.38706 -13.25968 -12.98115 -12.70077 -12.30798 -12.04431 -11.79040 -11.59840 -11.32458 -11.26389 -10.64004 -10.49960 -10.40590 -9.51190 -9.40756 -8.28127 -8.05621 -7.90788 -7.82001 -6.63606 -4.69331 2.29803 2.56505 3.02879 3.04453 3.07693 3.84117 4.39482 4.43670 4.88736 5.04432 5.23035 5.55267 5.64019 5.94697 5.97548 6.02379 6.28532 6.43150 6.68995 6.88801 7.00019 7.18368 7.33761 7.48163 7.72123 7.98434 8.07984 8.25522 8.50953 8.70189 9.72860 10.10976 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.010906 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.439746 B = 2566.767039 C = 3894.777129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.714 5.714 2 C 0.065 3.935 3 Si 0.913 3.087 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.402 4.402 8 H 0.096 0.904 9 C 0.275 3.725 10 N -0.463 5.463 11 C 0.098 3.902 12 C 0.323 3.677 13 F -0.207 7.207 14 F -0.208 7.208 15 C -0.309 4.309 16 C 0.162 3.838 17 O -0.505 6.505 18 C -0.248 4.248 19 C 0.131 3.869 20 N -0.838 5.838 21 H 0.276 0.724 22 H 0.126 0.874 23 H 0.104 0.896 24 H 0.376 0.624 25 H 0.077 0.923 26 H 0.018 0.982 27 H 0.329 0.671 28 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.945 -2.700 1.453 3.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.432 4.432 8 H 0.114 0.886 9 C 0.151 3.849 10 N -0.177 5.177 11 C -0.051 4.051 12 C 0.268 3.732 13 F -0.189 7.189 14 F -0.189 7.189 15 C -0.334 4.334 16 C 0.112 3.888 17 O -0.313 6.313 18 C -0.255 4.255 19 C 0.001 3.999 20 N -0.366 5.366 21 H 0.087 0.913 22 H 0.143 0.857 23 H 0.123 0.877 24 H 0.230 0.770 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.140 0.860 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.950 -0.961 0.880 1.613 hybrid contribution 1.061 -1.341 0.283 1.733 sum 2.010 -2.302 1.163 3.270 Atomic orbital electron populations 1.70096 1.07424 1.28253 1.27663 1.26163 0.94978 1.01541 0.93399 0.86171 0.80919 0.80600 0.78633 1.18174 1.19774 1.19665 1.19801 0.94878 0.88686 1.39835 0.88593 1.18144 0.86663 0.91438 0.88676 1.68338 1.07891 1.25012 1.16419 1.21043 0.93979 0.90743 0.99338 1.20272 0.89392 0.93246 0.70268 1.92933 1.89008 1.85110 1.51826 1.92931 1.89008 1.85101 1.51882 1.21131 0.93854 0.97541 1.20829 1.18200 0.89612 0.83540 0.97469 1.84688 1.78732 1.35445 1.32446 1.20688 0.95046 0.93028 1.16692 1.20196 0.91829 0.99366 0.88475 1.58749 1.11630 1.51303 1.14912 0.91304 0.85710 0.87741 0.77027 0.90466 0.96369 0.85977 0.86097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.84 11.46 55.55 0.64 -17.20 15 2 C 0.07 1.57 5.50 -17.35 -0.10 1.47 15 3 Si 0.91 17.79 29.56 -169.99 -5.02 12.77 15 4 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 15 6 H -0.27 -5.25 7.11 56.52 0.40 -4.85 15 7 C -0.40 -10.13 8.68 -37.69 -0.33 -10.45 15 8 H 0.10 2.30 6.02 -52.48 -0.32 1.98 15 9 C 0.27 7.14 6.55 -85.01 -0.56 6.58 15 10 N -0.46 -12.21 7.74 -7.43 -0.06 -12.26 15 11 C 0.10 2.35 6.28 -82.62 -0.52 1.83 15 12 C 0.32 6.73 5.54 36.01 0.20 6.93 15 13 F -0.21 -4.27 17.25 2.25 0.04 -4.24 15 14 F -0.21 -4.23 17.25 2.25 0.04 -4.19 15 15 C -0.31 -7.17 9.59 -39.00 -0.37 -7.54 15 16 C 0.16 3.62 6.74 -38.90 -0.26 3.36 15 17 O -0.50 -9.50 12.69 -18.98 -0.24 -9.74 15 18 C -0.25 -5.78 5.48 -103.58 -0.57 -6.34 15 19 C 0.13 2.57 6.22 -4.97 -0.03 2.54 15 20 N -0.84 -14.25 9.61 -11.41 -0.11 -14.36 15 21 H 0.28 6.20 8.29 -40.82 -0.34 5.86 15 22 H 0.13 2.45 8.10 -51.93 -0.42 2.02 15 23 H 0.10 2.29 8.06 -52.49 -0.42 1.87 15 24 H 0.38 5.19 9.06 45.56 0.41 5.60 15 25 H 0.08 1.56 6.34 -51.93 -0.33 1.23 15 26 H 0.02 0.34 7.60 -51.93 -0.39 -0.05 15 27 H 0.33 5.16 8.99 -39.29 -0.35 4.81 15 28 H 0.33 4.56 9.08 -39.29 -0.36 4.20 15 LS Contribution 258.99 15.07 3.90 3.90 Total: -1.00 -28.99 258.99 -4.66 -33.65 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -1.31 Total: 13.29 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -2.53 Total: -1.62 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.47 Total: -43.82 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.24 Total: -9.74 kcal Atomic # 9 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.02 Total: 12.77 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.99 -4.66 -33.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.948 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds