Wall clock time and date at job start Mon Mar 30 2020 03:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86800 * 120.00145 * 2 1 4 4 H 1.48496 * 109.47573 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47232 * 299.99775 * 3 2 1 6 6 H 1.48501 * 109.47127 * 59.99512 * 3 2 1 7 7 C 1.40022 * 120.00112 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99648 * 180.02562 * 7 2 1 9 9 C 1.41443 * 119.99926 * 0.02562 * 7 2 1 10 10 N 1.33698 * 119.80249 * 359.97438 * 9 7 2 11 11 C 1.31473 * 121.65416 * 179.97438 * 10 9 7 12 12 C 1.50703 * 119.46264 * 180.02562 * 11 10 9 13 13 F 1.39894 * 109.47102 * 120.00216 * 12 11 10 14 14 F 1.39904 * 109.47136 * 240.00568 * 12 11 10 15 15 C 1.38567 * 121.07914 * 359.97438 * 11 10 9 16 16 C 1.39482 * 119.49493 * 359.80396 * 15 11 10 17 17 O 1.35758 * 120.76813 * 180.23663 * 16 15 11 18 18 C 1.38841 * 118.47011 * 0.43627 * 16 15 11 19 19 C 1.50697 * 120.54745 * 179.80275 * 18 16 15 20 20 N 1.46905 * 109.47066 * 269.72052 * 19 18 16 21 21 H 0.97003 * 119.99873 * 0.02562 * 1 2 3 22 22 H 1.08997 * 109.47129 * 0.02562 * 12 11 10 23 23 H 1.08001 * 120.25356 * 180.02562 * 15 11 10 24 24 H 0.96698 * 114.00577 * 270.20429 * 17 16 15 25 25 H 1.09001 * 109.47558 * 149.72215 * 19 18 16 26 26 H 1.08998 * 109.47216 * 29.71878 * 19 18 16 27 27 H 1.00901 * 110.99869 * 56.04737 * 20 19 18 28 28 H 1.00896 * 110.99543 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7015 1.3464 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8827 2.3965 1.2124 7 6 2.0076 -1.2126 0.0005 8 1 3.0876 -1.2125 0.0010 9 6 1.3004 -2.4376 0.0005 10 7 -0.0366 -2.4330 0.0005 11 6 -0.7304 -3.5497 0.0000 12 6 -2.2361 -3.4869 -0.0005 13 9 -2.7291 -4.1262 -1.1430 14 9 -2.7300 -4.1265 1.1415 15 6 -0.0998 -4.7836 -0.0010 16 6 1.2937 -4.8426 -0.0058 17 8 1.9382 -6.0374 -0.0117 18 6 2.0067 -3.6512 0.0000 19 6 3.5136 -3.6604 -0.0002 20 7 4.0035 -3.6635 1.3847 21 1 -0.4850 0.8401 -0.0004 22 1 -2.5563 -2.4450 -0.0009 23 1 -0.6829 -5.6927 -0.0019 24 1 2.1251 -6.3881 0.8699 25 1 3.8823 -2.7726 -0.5140 26 1 3.8714 -4.5526 -0.5142 27 1 3.6234 -4.4427 1.9010 28 1 5.0121 -3.6701 1.4114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238623430.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:11 Heat of formation + Delta-G solvation = -137.939471 kcal Electronic energy + Delta-G solvation = -17688.336825 eV Core-core repulsion = 14373.924306 eV Total energy + Delta-G solvation = -3314.412519 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.95185 -47.94638 -40.80286 -38.11754 -35.97077 -35.25572 -32.22862 -31.29782 -28.39747 -27.66786 -24.59180 -23.55303 -21.82349 -20.03147 -18.98746 -18.20074 -17.85543 -17.67702 -16.97553 -16.82767 -16.48816 -15.59794 -15.35973 -15.01897 -14.91465 -14.59705 -14.36018 -13.95580 -13.81768 -13.44928 -13.23710 -12.99119 -12.84973 -12.31484 -12.21341 -11.96453 -11.25186 -11.09023 -9.98080 -9.80882 -9.71255 -9.36378 -8.40702 -6.55840 0.51228 0.80999 1.44426 1.50845 1.59148 2.22798 2.65541 2.70790 3.24466 3.39555 3.59337 4.00617 4.03817 4.24583 4.31728 4.39493 4.58826 4.75917 4.94917 5.19780 5.25489 5.41519 5.62900 5.77559 6.22146 6.35217 6.56044 6.77495 6.83758 6.94596 7.89987 8.37114 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.017679 B = 0.010906 C = 0.007187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.439746 B = 2566.767039 C = 3894.777129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.748 5.748 2 C 0.023 3.977 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.427 4.427 8 H 0.101 0.899 9 C 0.243 3.757 10 N -0.493 5.493 11 C 0.077 3.923 12 C 0.332 3.668 13 F -0.206 7.206 14 F -0.204 7.204 15 C -0.319 4.319 16 C 0.165 3.835 17 O -0.501 6.501 18 C -0.259 4.259 19 C 0.142 3.858 20 N -0.842 5.842 21 H 0.283 0.717 22 H 0.137 0.863 23 H 0.114 0.886 24 H 0.401 0.599 25 H 0.067 0.933 26 H 0.029 0.971 27 H 0.338 0.662 28 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -2.716 1.743 4.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.200 4.200 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.457 4.457 8 H 0.119 0.881 9 C 0.119 3.881 10 N -0.208 5.208 11 C -0.070 4.070 12 C 0.278 3.722 13 F -0.187 7.187 14 F -0.186 7.186 15 C -0.344 4.344 16 C 0.115 3.885 17 O -0.312 6.312 18 C -0.265 4.265 19 C 0.011 3.989 20 N -0.373 5.373 21 H 0.094 0.906 22 H 0.154 0.846 23 H 0.132 0.868 24 H 0.259 0.741 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.150 0.850 28 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.993 -1.024 1.192 2.538 hybrid contribution 0.753 -1.480 0.212 1.674 sum 2.746 -2.504 1.404 3.973 Atomic orbital electron populations 1.70165 1.08908 1.29588 1.28273 1.27031 0.95751 1.04690 0.92527 0.85065 0.79568 0.75909 0.78689 1.17624 1.19198 1.19267 1.20089 0.95273 0.89399 1.40919 0.88110 1.18632 0.87154 0.92909 0.89396 1.68314 1.08493 1.26087 1.17864 1.21507 0.95453 0.90783 0.99306 1.20161 0.87942 0.93777 0.70349 1.92932 1.88814 1.85158 1.51795 1.92933 1.88787 1.85115 1.51721 1.21380 0.94673 0.97649 1.20745 1.18209 0.89450 0.84478 0.96412 1.84619 1.78150 1.33862 1.34586 1.21022 0.96974 0.92545 1.15930 1.20025 0.89628 0.99374 0.89859 1.58599 1.13271 1.51985 1.13454 0.90609 0.84615 0.86780 0.74119 0.91432 0.95283 0.84982 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -37.74 11.46 21.84 0.25 -37.49 15 2 C 0.02 1.10 5.50 85.29 0.47 1.56 15 3 Si 0.99 36.11 29.56 68.60 2.03 38.14 15 4 H -0.25 -8.92 7.11 99.48 0.71 -8.21 15 5 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15 6 H -0.27 -9.54 7.11 99.48 0.71 -8.84 15 7 C -0.43 -21.60 8.68 23.49 0.20 -21.39 15 8 H 0.10 4.81 6.02 -2.91 -0.02 4.79 15 9 C 0.24 12.74 6.55 40.18 0.26 13.01 15 10 N -0.49 -26.34 7.74 -177.42 -1.37 -27.72 15 11 C 0.08 3.72 6.28 42.69 0.27 3.99 15 12 C 0.33 13.77 5.54 71.24 0.39 14.16 15 13 F -0.21 -8.35 17.25 44.97 0.78 -7.58 15 14 F -0.20 -8.17 17.25 44.97 0.78 -7.39 15 15 C -0.32 -14.65 9.59 22.65 0.22 -14.43 15 16 C 0.17 7.20 6.74 22.71 0.15 7.35 15 17 O -0.50 -17.66 12.69 -90.84 -1.15 -18.82 15 18 C -0.26 -11.88 5.48 -19.19 -0.11 -11.99 15 19 C 0.14 5.35 6.22 85.55 0.53 5.88 15 20 N -0.84 -26.98 9.61 -190.00 -1.83 -28.80 15 21 H 0.28 12.80 8.29 -92.71 -0.77 12.04 15 22 H 0.14 5.33 8.10 -2.39 -0.02 5.31 15 23 H 0.11 4.89 8.06 -2.91 -0.02 4.86 15 24 H 0.40 9.89 9.06 -74.06 -0.67 9.22 15 25 H 0.07 2.67 6.34 -2.39 -0.02 2.66 15 26 H 0.03 1.03 7.60 -2.39 -0.02 1.01 15 27 H 0.34 9.84 8.99 -89.69 -0.81 9.03 15 28 H 0.35 8.81 9.08 -89.70 -0.81 8.00 15 Total: -1.00 -61.23 258.99 0.84 -60.39 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -1.03 Total: 31.13 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 2.40 Total: -1.86 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -2.95 Total: -94.01 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -1.15 Total: -18.82 kcal Atomic # 9 Polarization: -16.52 SS G_CDS: 1.55 Total: -14.97 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Total: -61.23 0.84 -60.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238623430.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.553 kcal (2) G-P(sol) polarization free energy of solvation -61.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds