Wall clock time and date at job start Mon Mar 30 2020 03:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48500 * 109.46892 * 240.00305 * 3 2 1 5 5 H 1.48500 * 109.46916 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47098 * 119.99977 * 3 2 1 7 7 C 1.39935 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99843 * 161.19520 * 7 2 1 9 9 C 1.41419 * 120.00142 * 341.20255 * 7 2 1 10 10 C 1.41006 * 120.63296 * 130.09272 * 9 7 2 11 11 C 1.50696 * 120.92403 * 359.97438 * 10 9 7 12 12 N 1.46902 * 109.46926 * 90.00540 * 11 10 9 13 13 C 1.38484 * 118.15429 * 180.27315 * 10 9 7 14 14 O 1.35913 * 120.34682 * 179.74978 * 13 10 9 15 15 C 1.39160 * 119.31036 * 359.47462 * 13 10 9 16 16 N 1.32009 * 121.23095 * 0.54248 * 15 13 10 17 17 C 1.31482 * 122.04242 * 359.73645 * 16 15 13 18 18 C 1.50699 * 119.74123 * 180.02562 * 17 16 15 19 19 F 1.39907 * 109.47146 * 20.24561 * 18 17 16 20 20 F 1.39893 * 109.47316 * 140.24502 * 18 17 16 21 21 H 0.97004 * 120.00502 * 5.14405 * 1 2 3 22 22 H 1.08998 * 109.47493 * 330.00895 * 11 10 9 23 23 H 1.09001 * 109.47268 * 210.00310 * 11 10 9 24 24 H 1.00901 * 111.00228 * 59.99617 * 12 11 10 25 25 H 1.00902 * 111.00374 * 183.95095 * 12 11 10 26 26 H 0.96701 * 114.00405 * 89.99202 * 14 13 10 27 27 H 1.07997 * 119.38190 * 180.27809 * 15 13 10 28 28 H 1.09003 * 109.47168 * 260.25091 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0959 1.6964 1.2124 7 6 2.0079 -1.2119 0.0005 8 1 3.0447 -1.2370 -0.3010 9 6 1.3574 -2.4038 0.3957 10 6 1.4266 -3.5604 -0.4078 11 6 2.1927 -3.5572 -1.7055 12 7 3.5840 -3.9558 -1.4537 13 6 0.7656 -4.6976 0.0255 14 8 0.7985 -5.8357 -0.7167 15 6 0.0722 -4.6646 1.2316 16 7 0.0244 -3.5672 1.9638 17 6 0.6283 -2.4580 1.5984 18 6 0.5401 -1.2351 2.4747 19 9 0.1932 -1.6174 3.7751 20 9 1.7787 -0.5852 2.4946 21 1 -0.4851 0.8367 -0.0753 22 1 2.1740 -2.5560 -2.1361 23 1 1.7334 -4.2603 -2.4004 24 1 3.6283 -4.8813 -1.0541 25 1 4.1347 -3.8995 -2.2973 26 1 1.5354 -6.4241 -0.5021 27 1 -0.4398 -5.5521 1.5728 28 1 -0.2186 -0.5593 2.0801 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238624447.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:11 Heat of formation + Delta-G solvation = -114.620316 kcal Electronic energy + Delta-G solvation = -18243.425077 eV Core-core repulsion = 14930.023752 eV Total energy + Delta-G solvation = -3313.401324 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.74534 -45.75838 -39.26354 -36.52631 -34.59537 -33.67664 -30.59292 -29.76379 -26.47161 -25.09544 -23.80258 -21.58936 -20.04030 -18.15367 -16.92460 -16.51123 -16.22746 -15.99311 -15.21296 -15.19701 -14.94982 -14.36784 -13.90010 -13.25631 -12.80774 -12.66944 -12.34741 -12.27531 -11.95019 -11.63710 -11.44821 -11.36327 -11.00791 -10.86353 -10.60945 -10.47214 -9.97309 -9.06319 -8.38515 -8.30344 -8.02971 -7.49898 -6.93628 -4.68043 2.11048 2.49161 3.06187 3.06881 3.16912 3.90385 4.34676 4.79727 4.96821 5.02434 5.32218 5.41406 5.64479 5.78958 6.05845 6.21419 6.27412 6.48676 6.59411 6.83019 7.03420 7.21823 7.33113 7.44424 7.62944 7.89440 8.14538 8.23544 8.42554 8.65541 9.19073 10.04155 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.021446 B = 0.012401 C = 0.008849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.305256 B = 2257.425825 C = 3163.508694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.450 4.450 8 H 0.098 0.902 9 C 0.129 3.871 10 C -0.152 4.152 11 C 0.126 3.874 12 N -0.839 5.839 13 C 0.083 3.917 14 O -0.503 6.503 15 C -0.033 4.033 16 N -0.432 5.432 17 C -0.016 4.016 18 C 0.336 3.664 19 F -0.216 7.216 20 F -0.192 7.192 21 H 0.287 0.713 22 H 0.086 0.914 23 H 0.023 0.977 24 H 0.328 0.672 25 H 0.332 0.668 26 H 0.375 0.625 27 H 0.134 0.866 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.080 -2.812 -1.827 4.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.138 4.138 3 Si 0.736 3.264 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.480 4.480 8 H 0.116 0.884 9 C 0.124 3.876 10 C -0.161 4.161 11 C -0.003 4.003 12 N -0.368 5.368 13 C 0.036 3.964 14 O -0.310 6.310 15 C -0.191 4.191 16 N -0.141 5.141 17 C -0.159 4.159 18 C 0.282 3.718 19 F -0.198 7.198 20 F -0.173 7.173 21 H 0.098 0.902 22 H 0.104 0.896 23 H 0.041 0.959 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.228 0.772 27 H 0.152 0.848 28 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.944 -1.806 -0.765 2.762 hybrid contribution 0.925 -0.310 -1.279 1.609 sum 2.869 -2.116 -2.044 4.109 Atomic orbital electron populations 1.69726 1.07637 1.30353 1.36408 1.25875 0.94737 1.01279 0.91936 0.86295 0.80324 0.79525 0.80236 1.19188 1.20409 1.18024 1.19358 0.99263 0.89779 1.39599 0.88400 1.17805 0.88392 0.92580 0.88805 1.20527 1.03058 0.94886 0.97580 1.20251 0.86174 1.00727 0.93165 1.58676 1.12048 1.32408 1.33624 1.19316 0.99176 0.86203 0.91668 1.84752 1.52744 1.31535 1.62006 1.22104 1.07030 0.96692 0.93293 1.66683 1.15987 0.98688 1.32757 1.21601 1.05509 0.92999 0.95764 1.20135 0.83449 0.91238 0.77023 1.92884 1.92299 1.92896 1.41716 1.92907 1.46031 1.82130 1.96277 0.90244 0.89570 0.95886 0.86049 0.85615 0.77157 0.84837 0.86087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.85 10.84 55.55 0.60 -19.25 15 2 C 0.08 1.84 3.32 -17.35 -0.06 1.78 15 3 Si 0.91 18.65 29.01 -169.99 -4.93 13.72 15 4 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 5 H -0.28 -5.53 7.11 56.52 0.40 -5.12 15 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 7 C -0.45 -11.15 6.18 -37.74 -0.23 -11.38 15 8 H 0.10 2.42 7.91 -52.48 -0.42 2.01 15 9 C 0.13 3.26 5.15 -106.69 -0.55 2.71 15 10 C -0.15 -3.44 5.53 -103.48 -0.57 -4.02 15 11 C 0.13 2.44 6.37 -4.98 -0.03 2.41 15 12 N -0.84 -13.70 9.59 -11.41 -0.11 -13.81 15 13 C 0.08 1.77 6.70 -39.15 -0.26 1.50 15 14 O -0.50 -8.83 12.67 -19.47 -0.25 -9.07 15 15 C -0.03 -0.74 11.13 -17.13 -0.19 -0.93 15 16 N -0.43 -10.77 9.82 -8.67 -0.09 -10.86 15 17 C -0.02 -0.40 6.32 -81.80 -0.52 -0.92 15 18 C 0.34 8.20 4.48 36.01 0.16 8.37 15 19 F -0.22 -5.18 16.96 2.25 0.04 -5.15 15 20 F -0.19 -4.73 13.78 2.25 0.03 -4.69 15 21 H 0.29 6.42 8.30 -40.82 -0.34 6.08 15 22 H 0.09 1.79 7.22 -51.93 -0.38 1.42 15 23 H 0.02 0.42 7.61 -51.93 -0.39 0.03 15 24 H 0.33 4.79 9.03 -39.29 -0.35 4.44 15 25 H 0.33 4.47 9.08 -39.29 -0.36 4.11 15 26 H 0.37 4.65 9.06 45.56 0.41 5.07 15 27 H 0.13 2.61 8.06 -52.49 -0.42 2.19 15 28 H 0.12 2.93 6.18 -51.93 -0.32 2.61 15 LS Contribution 251.65 15.07 3.79 3.79 Total: -1.00 -28.33 251.65 -4.52 -32.85 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -1.36 Total: 12.95 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -2.25 Total: -0.48 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.41 Total: -43.91 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.25 Total: -9.07 kcal Atomic # 9 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -4.93 Total: 13.72 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.33 -4.52 -32.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238624447.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.770 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds