Wall clock time and date at job start Mon Mar 30 2020 03:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86798 * 119.99776 * 2 1 4 4 H 1.48506 * 109.47021 * 274.98201 * 3 2 1 5 5 H 1.48497 * 109.47398 * 34.97969 * 3 2 1 6 6 H 1.48499 * 109.47292 * 154.98625 * 3 2 1 7 7 C 1.40051 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99992 * 186.27023 * 7 2 1 9 9 C 1.41038 * 120.00120 * 6.27678 * 7 2 1 10 10 N 1.33689 * 119.89206 * 353.61372 * 9 7 2 11 11 C 1.31339 * 121.57364 * 179.97438 * 10 9 7 12 12 C 1.50695 * 119.40631 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46789 * 274.99265 * 12 11 10 14 14 C 1.38953 * 121.18952 * 0.24661 * 11 10 9 15 15 C 1.38607 * 119.65332 * 359.49669 * 14 11 10 16 16 C 1.50695 * 120.73129 * 180.24506 * 15 14 11 17 17 F 1.39902 * 109.47197 * 120.25374 * 16 15 14 18 18 F 1.39904 * 109.47309 * 240.25324 * 16 15 14 19 19 C 1.38987 * 118.53594 * 0.49466 * 15 14 11 20 20 O 1.35580 * 120.58590 * 179.77145 * 19 15 14 21 21 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47362 * 34.99491 * 12 11 10 23 23 H 1.09000 * 109.47155 * 154.99809 * 12 11 10 24 24 H 1.00902 * 110.99944 * 56.05511 * 13 12 11 25 25 H 1.00900 * 110.99987 * 179.97438 * 13 12 11 26 26 H 1.07996 * 120.17599 * 179.74383 * 14 11 10 27 27 H 1.09005 * 109.47195 * 0.25047 * 16 15 14 28 28 H 0.96699 * 114.00411 * 269.97702 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3837 2.1072 -1.3949 5 1 1.4955 2.6200 0.8026 6 1 3.5878 1.4122 0.5920 7 6 2.0078 -1.2129 0.0005 8 1 3.0830 -1.2156 0.1027 9 6 1.3090 -2.4307 -0.1325 10 7 -0.0279 -2.4354 -0.1304 11 6 -0.7118 -3.5500 -0.2525 12 6 -2.2179 -3.4987 -0.2433 13 7 -2.6998 -3.5146 1.1444 14 6 -0.0718 -4.7763 -0.3844 15 6 1.3132 -4.8289 -0.3984 16 6 2.0324 -6.1450 -0.5458 17 9 2.8322 -6.1134 -1.6932 18 9 2.8368 -6.3652 0.5775 19 6 2.0242 -3.6417 -0.2682 20 8 3.3799 -3.6456 -0.2717 21 1 -0.4850 0.8400 0.0004 22 1 -2.5534 -2.5851 -0.7340 23 1 -2.6141 -4.3636 -0.7754 24 1 -2.2952 -2.7587 1.6763 25 1 -3.7077 -3.4805 1.1775 26 1 -0.6504 -5.6832 -0.4797 27 1 1.3027 -6.9500 -0.6335 28 1 3.7754 -3.7439 0.6052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238642457.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:19 Heat of formation + Delta-G solvation = -117.836816 kcal Electronic energy + Delta-G solvation = -17701.109084 eV Core-core repulsion = 14387.568282 eV Total energy + Delta-G solvation = -3313.540802 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -48.33661 -46.34162 -38.86586 -36.12701 -34.23375 -33.37846 -31.43453 -29.27925 -26.29466 -25.43494 -23.97481 -21.44080 -20.08204 -17.73187 -17.26077 -16.92121 -16.57806 -15.80286 -15.30216 -15.05331 -14.71244 -14.21501 -13.98348 -13.29139 -13.24330 -12.74665 -12.65912 -12.16297 -11.82550 -11.80651 -11.57249 -11.35209 -11.19560 -10.79646 -10.51123 -10.41226 -9.68594 -9.52762 -8.47740 -8.20803 -7.78526 -7.58594 -6.62037 -4.66447 2.36692 2.50222 3.00505 3.05137 3.05910 3.82861 4.38831 4.45459 4.82476 5.14347 5.28494 5.41704 5.52780 5.69311 5.78515 5.95175 6.21208 6.32463 6.66639 6.86578 6.99579 7.21596 7.29259 7.56331 7.65584 7.94272 8.09277 8.25760 8.60349 8.91454 9.82680 10.09376 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.009904 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.800738 B = 2826.507049 C = 4008.367480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.066 3.934 3 Si 0.914 3.086 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.408 4.408 8 H 0.092 0.908 9 C 0.236 3.764 10 N -0.459 5.459 11 C 0.149 3.851 12 C 0.123 3.877 13 N -0.844 5.844 14 C -0.262 4.262 15 C -0.132 4.132 16 C 0.322 3.678 17 F -0.202 7.202 18 F -0.209 7.209 19 C -0.022 4.022 20 O -0.484 6.484 21 H 0.275 0.725 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.348 0.652 25 H 0.331 0.669 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.895 -3.941 0.874 4.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.331 5.331 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.438 4.438 8 H 0.110 0.890 9 C 0.111 3.889 10 N -0.174 5.174 11 C 0.002 3.998 12 C -0.008 4.008 13 N -0.373 5.373 14 C -0.286 4.286 15 C -0.139 4.139 16 C 0.268 3.732 17 F -0.184 7.184 18 F -0.191 7.191 19 C -0.072 4.072 20 O -0.289 6.289 21 H 0.086 0.914 22 H 0.057 0.943 23 H 0.087 0.913 24 H 0.161 0.839 25 H 0.142 0.858 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -2.146 -3.642 0.385 4.245 hybrid contribution 0.580 0.706 0.150 0.926 sum -1.567 -2.936 0.536 3.370 Atomic orbital electron populations 1.70118 1.07344 1.28161 1.27515 1.26132 0.94980 1.01414 0.93460 0.86202 0.80574 0.80225 0.79266 1.19301 1.20015 1.18278 1.19611 0.95277 0.89125 1.39804 0.88964 1.18851 0.87998 0.91571 0.90519 1.68574 1.06646 1.25616 1.16560 1.20893 0.94959 0.89164 0.94791 1.20428 0.90871 0.99789 0.89666 1.58766 1.11241 1.54506 1.12822 1.20723 0.91792 0.98221 1.17887 1.20553 0.94909 0.92675 1.05727 1.20274 0.84282 0.97310 0.71295 1.92973 1.76738 1.97736 1.50905 1.92932 1.76779 1.95900 1.53452 1.19241 0.82755 0.92343 1.12836 1.84756 1.16486 1.95546 1.32158 0.91413 0.94295 0.91266 0.83861 0.85765 0.87778 0.87738 0.78699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.82 11.49 55.55 0.64 -17.19 15 2 C 0.07 1.62 5.49 -17.33 -0.10 1.53 15 3 Si 0.91 18.10 29.56 -169.99 -5.03 13.08 15 4 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 5 H -0.28 -5.28 7.11 56.52 0.40 -4.88 15 6 H -0.26 -5.07 7.11 56.52 0.40 -4.67 15 7 C -0.41 -10.66 8.93 -37.84 -0.34 -10.99 15 8 H 0.09 2.32 7.35 -52.48 -0.39 1.93 15 9 C 0.24 6.31 6.56 -84.84 -0.56 5.75 15 10 N -0.46 -11.93 7.79 -7.25 -0.06 -11.98 15 11 C 0.15 3.42 6.30 -82.54 -0.52 2.90 15 12 C 0.12 2.31 7.08 -4.98 -0.04 2.27 15 13 N -0.84 -14.25 9.61 -11.41 -0.11 -14.36 15 14 C -0.26 -5.70 9.37 -39.18 -0.37 -6.07 15 15 C -0.13 -2.96 5.40 -104.21 -0.56 -3.53 15 16 C 0.32 6.14 5.17 36.00 0.19 6.32 15 17 F -0.20 -4.15 17.06 2.25 0.04 -4.11 15 18 F -0.21 -4.02 17.06 2.25 0.04 -3.99 15 19 C -0.02 -0.54 6.66 -38.14 -0.25 -0.79 15 20 O -0.48 -11.21 11.76 -18.44 -0.22 -11.42 15 21 H 0.27 6.22 8.29 -40.82 -0.34 5.89 15 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.07 1.14 8.04 -51.93 -0.42 0.72 15 24 H 0.35 6.37 8.99 -39.29 -0.35 6.01 15 25 H 0.33 4.45 9.08 -39.29 -0.36 4.10 15 26 H 0.10 1.95 8.00 -52.49 -0.42 1.53 15 27 H 0.11 1.59 7.94 -51.93 -0.41 1.17 15 28 H 0.36 6.96 9.06 45.56 0.41 7.37 15 LS Contribution 261.49 15.07 3.94 3.94 Total: -1.00 -29.28 261.49 -4.78 -34.07 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -1.49 Total: 14.58 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -2.54 Total: -2.62 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.47 Total: -43.53 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -0.22 Total: -11.42 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.28 -4.78 -34.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238642457.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.770 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds