Wall clock time and date at job start Mon Mar 30 2020 03:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30756 * 1 3 3 Si 1.86798 * 119.99776 * 2 1 4 4 H 1.48506 * 109.47021 * 274.98201 * 3 2 1 5 5 H 1.48497 * 109.47398 * 34.97969 * 3 2 1 6 6 H 1.48499 * 109.47292 * 154.98625 * 3 2 1 7 7 C 1.40051 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99992 * 186.27023 * 7 2 1 9 9 C 1.41038 * 120.00120 * 6.27678 * 7 2 1 10 10 N 1.33689 * 119.89206 * 353.61372 * 9 7 2 11 11 C 1.31339 * 121.57364 * 179.97438 * 10 9 7 12 12 C 1.50695 * 119.40631 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.46789 * 274.99265 * 12 11 10 14 14 C 1.38953 * 121.18952 * 0.24661 * 11 10 9 15 15 C 1.38607 * 119.65332 * 359.49669 * 14 11 10 16 16 C 1.50695 * 120.73129 * 180.24506 * 15 14 11 17 17 F 1.39902 * 109.47197 * 120.25374 * 16 15 14 18 18 F 1.39904 * 109.47309 * 240.25324 * 16 15 14 19 19 C 1.38987 * 118.53594 * 0.49466 * 15 14 11 20 20 O 1.35580 * 120.58590 * 179.77145 * 19 15 14 21 21 H 0.97000 * 120.00181 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.47362 * 34.99491 * 12 11 10 23 23 H 1.09000 * 109.47155 * 154.99809 * 12 11 10 24 24 H 1.00902 * 110.99944 * 56.05511 * 13 12 11 25 25 H 1.00900 * 110.99987 * 179.97438 * 13 12 11 26 26 H 1.07996 * 120.17599 * 179.74383 * 14 11 10 27 27 H 1.09005 * 109.47195 * 0.25047 * 16 15 14 28 28 H 0.96699 * 114.00411 * 269.97702 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3837 2.1072 -1.3949 5 1 1.4955 2.6200 0.8026 6 1 3.5878 1.4122 0.5920 7 6 2.0078 -1.2129 0.0005 8 1 3.0830 -1.2156 0.1027 9 6 1.3090 -2.4307 -0.1325 10 7 -0.0279 -2.4354 -0.1304 11 6 -0.7118 -3.5500 -0.2525 12 6 -2.2179 -3.4987 -0.2433 13 7 -2.6998 -3.5146 1.1444 14 6 -0.0718 -4.7763 -0.3844 15 6 1.3132 -4.8289 -0.3984 16 6 2.0324 -6.1450 -0.5458 17 9 2.8322 -6.1134 -1.6932 18 9 2.8368 -6.3652 0.5775 19 6 2.0242 -3.6417 -0.2682 20 8 3.3799 -3.6456 -0.2717 21 1 -0.4850 0.8400 0.0004 22 1 -2.5534 -2.5851 -0.7340 23 1 -2.6141 -4.3636 -0.7754 24 1 -2.2952 -2.7587 1.6763 25 1 -3.7077 -3.4805 1.1775 26 1 -0.6504 -5.6832 -0.4797 27 1 1.3027 -6.9500 -0.6335 28 1 3.7754 -3.7439 0.6052 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238642457.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:19 Heat of formation + Delta-G solvation = -140.626392 kcal Electronic energy + Delta-G solvation = -17702.097315 eV Core-core repulsion = 14387.568282 eV Total energy + Delta-G solvation = -3314.529032 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 244.076 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.86197 -47.87674 -40.65038 -37.88684 -35.97257 -34.95747 -33.20242 -31.01521 -28.06934 -27.08226 -25.56964 -23.22226 -21.75543 -19.51862 -19.01181 -18.52097 -18.11492 -17.45090 -16.93934 -16.58635 -16.41162 -15.98602 -15.49321 -14.94165 -14.78556 -14.28514 -14.26517 -13.81414 -13.57751 -13.36425 -13.21292 -13.07210 -12.82179 -12.47520 -12.10952 -12.04543 -11.45465 -11.29206 -10.26585 -9.72667 -9.52879 -9.37932 -8.41557 -6.56436 0.57760 0.73505 1.38145 1.47624 1.51775 2.18261 2.67145 2.91801 3.30328 3.47146 3.70908 3.80410 3.94751 4.10414 4.21106 4.43383 4.62188 4.76476 4.93371 5.11205 5.22872 5.43258 5.51717 5.89884 6.13872 6.22313 6.44534 6.67779 6.75763 7.14274 8.00416 8.32156 Molecular weight = 244.08amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.009904 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.800738 B = 2826.507049 C = 4008.367480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.026 3.974 3 Si 0.987 3.013 4 H -0.267 1.267 5 H -0.262 1.262 6 H -0.258 1.258 7 C -0.446 4.446 8 H 0.087 0.913 9 C 0.203 3.797 10 N -0.484 5.484 11 C 0.129 3.871 12 C 0.130 3.870 13 N -0.840 5.840 14 C -0.253 4.253 15 C -0.140 4.140 16 C 0.324 3.676 17 F -0.212 7.212 18 F -0.211 7.211 19 C -0.052 4.052 20 O -0.491 6.491 21 H 0.282 0.718 22 H 0.027 0.973 23 H 0.099 0.901 24 H 0.339 0.661 25 H 0.352 0.648 26 H 0.143 0.857 27 H 0.158 0.842 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -4.844 0.873 5.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.364 5.364 2 C -0.197 4.197 3 Si 0.807 3.193 4 H -0.192 1.192 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.477 4.477 8 H 0.105 0.895 9 C 0.078 3.922 10 N -0.199 5.199 11 C -0.018 4.018 12 C -0.001 4.001 13 N -0.370 5.370 14 C -0.276 4.276 15 C -0.147 4.147 16 C 0.270 3.730 17 F -0.194 7.194 18 F -0.193 7.193 19 C -0.102 4.102 20 O -0.299 6.299 21 H 0.093 0.907 22 H 0.045 0.955 23 H 0.117 0.883 24 H 0.151 0.849 25 H 0.166 0.834 26 H 0.161 0.839 27 H 0.175 0.825 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.924 -4.575 0.392 5.444 hybrid contribution 0.747 0.853 0.159 1.145 sum -2.177 -3.722 0.551 4.347 Atomic orbital electron populations 1.70170 1.08614 1.29433 1.28143 1.26941 0.95824 1.04308 0.92581 0.85115 0.79147 0.75762 0.79241 1.19157 1.18640 1.18146 1.19837 0.95333 0.90381 1.42165 0.89471 1.19276 0.88922 0.92714 0.91274 1.68559 1.06604 1.27446 1.17340 1.21653 0.97010 0.89118 0.94015 1.20432 0.88333 1.00603 0.90750 1.58732 1.12871 1.53888 1.11538 1.21182 0.91829 0.99268 1.15359 1.21001 0.95612 0.93720 1.04355 1.20614 0.84665 0.96935 0.70744 1.92953 1.77167 1.97736 1.51521 1.92927 1.76976 1.95762 1.53620 1.19419 0.83273 0.93019 1.14502 1.84693 1.16202 1.95627 1.33351 0.90701 0.95460 0.88264 0.84925 0.83386 0.83913 0.82542 0.77289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -37.99 11.49 21.84 0.25 -37.74 15 2 C 0.03 1.32 5.49 85.29 0.47 1.78 15 3 Si 0.99 37.63 29.56 68.60 2.03 39.66 15 4 H -0.27 -10.01 7.11 99.48 0.71 -9.30 15 5 H -0.26 -9.33 7.11 99.48 0.71 -8.63 15 6 H -0.26 -9.63 7.11 99.48 0.71 -8.92 15 7 C -0.45 -24.16 8.93 23.40 0.21 -23.95 15 8 H 0.09 4.58 7.35 -2.91 -0.02 4.55 15 9 C 0.20 11.17 6.56 40.30 0.26 11.43 15 10 N -0.48 -25.53 7.79 -176.86 -1.38 -26.90 15 11 C 0.13 5.77 6.30 42.80 0.27 6.04 15 12 C 0.13 4.61 7.08 85.55 0.61 5.22 15 13 N -0.84 -26.73 9.61 -190.01 -1.83 -28.56 15 14 C -0.25 -10.39 9.37 22.53 0.21 -10.18 15 15 C -0.14 -6.08 5.40 -19.60 -0.11 -6.18 15 16 C 0.32 11.44 5.17 71.23 0.37 11.81 15 17 F -0.21 -8.32 17.06 44.97 0.77 -7.55 15 18 F -0.21 -7.69 17.06 44.97 0.77 -6.93 15 19 C -0.05 -2.64 6.66 23.20 0.15 -2.48 15 20 O -0.49 -23.16 11.76 -88.88 -1.05 -24.21 15 21 H 0.28 12.96 8.29 -92.71 -0.77 12.19 15 22 H 0.03 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.10 2.91 8.04 -2.39 -0.02 2.89 15 24 H 0.34 12.14 8.99 -89.69 -0.81 11.33 15 25 H 0.35 8.62 9.08 -89.69 -0.81 7.80 15 26 H 0.14 4.66 8.00 -2.91 -0.02 4.64 15 27 H 0.16 3.98 7.94 -2.38 -0.02 3.96 15 28 H 0.37 14.76 9.06 -74.06 -0.67 14.09 15 Total: -1.00 -64.11 261.49 0.97 -63.15 By element: Atomic # 1 Polarization: 36.64 SS G_CDS: -1.04 Total: 35.60 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 2.45 Total: -6.51 kcal Atomic # 7 Polarization: -90.25 SS G_CDS: -2.95 Total: -93.21 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.05 Total: -24.21 kcal Atomic # 9 Polarization: -16.01 SS G_CDS: 1.53 Total: -14.48 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -64.11 0.97 -63.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238642457.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.480 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds