Wall clock time and date at job start Mon Mar 30 2020 03:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29591 * 1 3 3 Si 1.86798 * 119.99630 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00597 * 3 2 1 5 5 H 1.48509 * 109.46699 * 210.00107 * 3 2 1 6 6 H 1.48496 * 109.47409 * 329.99892 * 3 2 1 7 7 C 1.46360 * 119.99869 * 179.72903 * 2 1 3 8 8 H 1.08002 * 119.99771 * 161.89367 * 7 2 1 9 9 C 1.41026 * 120.00289 * 341.88712 * 7 2 1 10 10 N 1.33770 * 119.82085 * 339.72961 * 9 7 2 11 11 C 1.30947 * 121.55509 * 179.70699 * 10 9 7 12 12 C 1.39536 * 121.03675 * 0.56632 * 11 10 9 13 13 N 1.48001 * 120.23391 * 179.73957 * 12 11 10 14 14 O 1.31706 * 120.00300 * 179.97438 * 13 12 11 15 15 O 1.31704 * 119.99788 * 359.97438 * 13 12 11 16 16 C 1.38656 * 119.53808 * 359.72436 * 12 11 10 17 17 C 1.38489 * 118.55449 * 359.97438 * 16 12 11 18 18 C 1.50695 * 120.52238 * 179.97438 * 17 16 12 19 19 F 1.39900 * 109.47219 * 20.22736 * 18 17 16 20 20 F 1.39902 * 109.47333 * 140.22689 * 18 17 16 21 21 H 0.97008 * 119.99867 * 174.19534 * 1 2 3 22 22 H 1.07997 * 119.48237 * 180.28987 * 11 10 9 23 23 H 1.08001 * 120.72663 * 180.02562 * 16 12 11 24 24 H 1.08994 * 109.47055 * 260.23085 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2298 1.6178 0.0000 4 1 2.4774 2.0464 1.4001 5 1 3.5274 1.4402 -0.7001 6 1 1.4273 2.6527 -0.7000 7 6 2.0277 -1.2675 0.0060 8 1 3.0676 -1.2920 -0.2846 9 6 1.3750 -2.4568 0.3913 10 7 0.2559 -2.3949 1.1215 11 6 -0.3807 -3.4772 1.4931 12 6 0.0928 -4.7440 1.1496 13 7 -0.6377 -5.9557 1.5839 14 8 -0.1870 -7.1492 1.2567 15 8 -1.7386 -5.8404 2.2976 16 6 1.2524 -4.8598 0.3983 17 6 1.9077 -3.7033 0.0098 18 6 3.1719 -3.7775 -0.8071 19 9 3.2484 -5.0251 -1.4356 20 9 3.1617 -2.7675 -1.7751 21 1 -0.4850 -0.8358 -0.0850 22 1 -1.2839 -3.3881 2.0783 23 1 1.6358 -5.8307 0.1213 24 1 4.0346 -3.6462 -0.1541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238690681.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:30 Heat of formation + Delta-G solvation = -76.312461 kcal Electronic energy + Delta-G solvation = -17235.249515 eV Core-core repulsion = 13787.676250 eV Total energy + Delta-G solvation = -3447.573265 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.55066 -46.56302 -39.48544 -37.40792 -34.60314 -33.29781 -32.30543 -31.26515 -27.54977 -25.87792 -24.51511 -22.22251 -21.21087 -19.21911 -17.71854 -17.44529 -17.02990 -16.53076 -15.76517 -15.48497 -15.17494 -14.87271 -14.51377 -13.59171 -13.27026 -13.07054 -12.86314 -12.63422 -12.38456 -11.95115 -11.66983 -11.13295 -10.90246 -10.60989 -10.23634 -10.06448 -9.98618 -9.73498 -9.51061 -9.08360 -8.83472 -8.03175 -5.73363 0.44139 1.82185 2.17301 2.41609 2.71204 2.78058 2.91042 3.36877 3.73048 4.22061 4.52767 4.66804 5.10213 5.22170 5.33836 5.38861 5.62812 5.89288 6.22500 6.33781 6.49607 6.74720 6.81986 7.05630 7.39856 7.60247 7.97497 8.71603 9.07859 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.008985 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.720569 B = 3115.648425 C = 4162.201420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.676 5.676 2 C 0.011 3.989 3 Si 1.083 2.917 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.339 4.339 8 H 0.116 0.884 9 C 0.200 3.800 10 N -0.521 5.521 11 C 0.234 3.766 12 C -0.199 4.199 13 N 0.046 4.954 14 O -0.285 6.285 15 O -0.278 6.278 16 C 0.040 3.960 17 C -0.305 4.305 18 C 0.337 3.663 19 F -0.210 7.210 20 F -0.195 7.195 21 H 0.324 0.676 22 H 0.159 0.841 23 H 0.139 0.861 24 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 4.494 -1.809 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.294 5.294 2 C -0.225 4.225 3 Si 0.902 3.098 4 H -0.188 1.188 5 H -0.188 1.188 6 H -0.188 1.188 7 C -0.365 4.365 8 H 0.134 0.866 9 C 0.086 3.914 10 N -0.236 5.236 11 C 0.052 3.948 12 C -0.302 4.302 13 N 0.485 4.515 14 O -0.450 6.450 15 O -0.445 6.445 16 C 0.018 3.982 17 C -0.311 4.311 18 C 0.283 3.717 19 F -0.191 7.191 20 F -0.177 7.177 21 H 0.142 0.858 22 H 0.176 0.824 23 H 0.157 0.843 24 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.540 7.195 -1.772 9.883 hybrid contribution 0.076 -3.164 -0.206 3.172 sum 6.616 4.031 -1.977 7.996 Atomic orbital electron populations 1.69773 1.08757 1.37326 1.13554 1.29252 0.95642 1.04766 0.92864 0.83366 0.75565 0.71546 0.79348 1.18833 1.18803 1.18823 1.23252 0.99751 0.91525 1.21956 0.86644 1.18265 0.89926 0.91406 0.91792 1.68438 1.10732 1.28057 1.16398 1.22537 0.96064 0.85378 0.90803 1.20725 1.03001 0.83631 1.22876 1.49929 1.00569 1.03419 0.97623 1.96148 1.73445 1.09761 1.65610 1.96145 1.12015 1.95309 1.40985 1.20530 0.89979 0.98820 0.88909 1.20877 1.03265 0.94356 1.12578 1.19826 0.97730 0.70814 0.83319 1.92937 1.97545 1.43853 1.84788 1.92977 1.97749 1.60504 1.66433 0.85779 0.82422 0.84310 0.87365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.68 -14.53 13.13 55.97 0.73 -13.80 14 2 C 0.01 0.22 5.50 -15.23 -0.08 0.13 14 3 Si 1.08 15.95 30.06 -169.99 -5.11 10.84 14 4 H -0.26 -3.80 7.11 56.52 0.40 -3.40 14 5 H -0.26 -3.57 7.11 56.52 0.40 -3.16 14 6 H -0.26 -3.90 7.11 56.52 0.40 -3.50 14 7 C -0.34 -6.84 7.99 -35.26 -0.28 -7.13 14 8 H 0.12 2.09 6.26 -52.49 -0.33 1.77 14 9 C 0.20 4.36 6.19 -84.99 -0.53 3.83 14 10 N -0.52 -11.65 7.71 -11.04 -0.09 -11.73 14 11 C 0.23 5.08 10.75 -17.44 -0.19 4.89 14 12 C -0.20 -4.52 6.95 -79.32 -0.55 -5.07 14 13 N 0.05 1.14 4.98 34.27 0.17 1.31 14 14 O -0.28 -7.15 19.21 -31.57 -0.61 -7.76 14 15 O -0.28 -6.88 19.18 -31.57 -0.61 -7.48 14 16 C 0.04 0.85 9.03 -39.33 -0.36 0.50 14 17 C -0.30 -6.20 5.80 -103.55 -0.60 -6.81 14 18 C 0.34 5.82 5.13 36.00 0.18 6.00 14 19 F -0.21 -3.71 16.31 2.25 0.04 -3.68 14 20 F -0.20 -3.57 14.66 2.25 0.03 -3.54 14 21 H 0.32 7.35 6.46 -40.82 -0.26 7.09 14 22 H 0.16 3.15 7.59 -52.49 -0.40 2.75 14 23 H 0.14 2.82 7.06 -52.49 -0.37 2.45 14 24 H 0.11 1.49 8.14 -51.93 -0.42 1.07 14 LS Contribution 239.40 15.07 3.61 3.61 Total: -1.00 -26.01 239.40 -4.80 -30.81 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -0.58 Total: 5.06 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.40 Total: -3.64 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 0.82 Total: -24.23 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.21 Total: -15.24 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.07 Total: -7.21 kcal Atomic # 14 Polarization: 15.95 SS G_CDS: -5.11 Total: 10.84 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -26.01 -4.80 -30.81 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238690681.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.499 kcal (2) G-P(sol) polarization free energy of solvation -26.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds