Wall clock time and date at job start Mon Mar 30 2020 03:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29591 * 1 3 3 Si 1.86798 * 119.99630 * 2 1 4 4 H 1.48499 * 109.47133 * 90.00597 * 3 2 1 5 5 H 1.48509 * 109.46699 * 210.00107 * 3 2 1 6 6 H 1.48496 * 109.47409 * 329.99892 * 3 2 1 7 7 C 1.46360 * 119.99869 * 179.72903 * 2 1 3 8 8 H 1.08002 * 119.99771 * 161.89367 * 7 2 1 9 9 C 1.41026 * 120.00289 * 341.88712 * 7 2 1 10 10 N 1.33770 * 119.82085 * 339.72961 * 9 7 2 11 11 C 1.30947 * 121.55509 * 179.70699 * 10 9 7 12 12 C 1.39536 * 121.03675 * 0.56632 * 11 10 9 13 13 N 1.48001 * 120.23391 * 179.73957 * 12 11 10 14 14 O 1.31706 * 120.00300 * 179.97438 * 13 12 11 15 15 O 1.31704 * 119.99788 * 359.97438 * 13 12 11 16 16 C 1.38656 * 119.53808 * 359.72436 * 12 11 10 17 17 C 1.38489 * 118.55449 * 359.97438 * 16 12 11 18 18 C 1.50695 * 120.52238 * 179.97438 * 17 16 12 19 19 F 1.39900 * 109.47219 * 20.22736 * 18 17 16 20 20 F 1.39902 * 109.47333 * 140.22689 * 18 17 16 21 21 H 0.97008 * 119.99867 * 174.19534 * 1 2 3 22 22 H 1.07997 * 119.48237 * 180.28987 * 11 10 9 23 23 H 1.08001 * 120.72663 * 180.02562 * 16 12 11 24 24 H 1.08994 * 109.47055 * 260.23085 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2298 1.6178 0.0000 4 1 2.4774 2.0464 1.4001 5 1 3.5274 1.4402 -0.7001 6 1 1.4273 2.6527 -0.7000 7 6 2.0277 -1.2675 0.0060 8 1 3.0676 -1.2920 -0.2846 9 6 1.3750 -2.4568 0.3913 10 7 0.2559 -2.3949 1.1215 11 6 -0.3807 -3.4772 1.4931 12 6 0.0928 -4.7440 1.1496 13 7 -0.6377 -5.9557 1.5839 14 8 -0.1870 -7.1492 1.2567 15 8 -1.7386 -5.8404 2.2976 16 6 1.2524 -4.8598 0.3983 17 6 1.9077 -3.7033 0.0098 18 6 3.1719 -3.7775 -0.8071 19 9 3.2484 -5.0251 -1.4356 20 9 3.1617 -2.7675 -1.7751 21 1 -0.4850 -0.8358 -0.0850 22 1 -1.2839 -3.3881 2.0783 23 1 1.6358 -5.8307 0.1213 24 1 4.0346 -3.6462 -0.1541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238690681.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:29 Heat of formation + Delta-G solvation = -90.483967 kcal Electronic energy + Delta-G solvation = -17235.864038 eV Core-core repulsion = 13787.676250 eV Total energy + Delta-G solvation = -3448.187788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.045 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.95633 -47.97490 -41.17292 -39.15895 -36.26793 -35.08002 -33.96774 -32.95994 -29.26375 -27.41042 -26.24842 -23.87498 -22.83994 -20.83107 -19.38949 -19.11255 -18.43678 -18.08123 -17.40146 -17.07366 -16.79863 -16.65330 -15.74987 -15.16986 -14.74697 -14.66734 -14.38187 -14.19270 -13.91567 -13.49476 -13.02492 -12.58368 -12.28015 -12.05943 -11.84356 -11.80583 -11.63159 -11.44987 -11.17201 -10.78962 -10.51566 -9.69015 -7.42640 -1.41481 0.18004 0.46519 0.69349 1.49843 1.53207 1.81477 2.16123 2.24655 2.78051 2.91181 3.22848 3.55214 3.62241 3.69185 3.94396 4.08611 4.24070 4.57261 4.66193 4.83681 5.06784 5.14146 5.31940 5.71328 5.90078 6.16868 7.00092 7.38425 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.008985 C = 0.006726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.720569 B = 3115.648425 C = 4162.201420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.688 5.688 2 C -0.019 4.019 3 Si 1.129 2.871 4 H -0.257 1.257 5 H -0.234 1.234 6 H -0.267 1.267 7 C -0.301 4.301 8 H 0.146 0.854 9 C 0.153 3.847 10 N -0.525 5.525 11 C 0.230 3.770 12 C -0.199 4.199 13 N 0.051 4.949 14 O -0.336 6.336 15 O -0.323 6.323 16 C 0.018 3.982 17 C -0.284 4.284 18 C 0.337 3.663 19 F -0.212 7.212 20 F -0.200 7.200 21 H 0.312 0.688 22 H 0.168 0.832 23 H 0.143 0.857 24 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.505 7.396 -2.726 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.305 5.305 2 C -0.251 4.251 3 Si 0.940 3.060 4 H -0.181 1.181 5 H -0.157 1.157 6 H -0.191 1.191 7 C -0.326 4.326 8 H 0.164 0.836 9 C 0.039 3.961 10 N -0.242 5.242 11 C 0.047 3.953 12 C -0.307 4.307 13 N 0.471 4.529 14 O -0.487 6.487 15 O -0.477 6.477 16 C -0.004 4.004 17 C -0.291 4.291 18 C 0.283 3.717 19 F -0.194 7.194 20 F -0.181 7.181 21 H 0.129 0.871 22 H 0.185 0.815 23 H 0.161 0.839 24 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.170 9.925 -2.662 13.772 hybrid contribution -0.560 -3.567 -0.089 3.612 sum 8.610 6.358 -2.751 11.051 Atomic orbital electron populations 1.69872 1.09851 1.36656 1.14157 1.30842 0.95462 1.07539 0.91258 0.82894 0.75525 0.67550 0.80005 1.18119 1.15664 1.19133 1.23998 1.00769 0.91253 1.16576 0.83628 1.18675 0.90815 0.92647 0.93917 1.68428 1.11028 1.28194 1.16536 1.22651 0.96476 0.85062 0.91150 1.20986 1.03376 0.83320 1.23000 1.50012 1.00866 1.03605 0.98451 1.96104 1.74303 1.10605 1.67727 1.96100 1.13278 1.95333 1.42992 1.20621 0.90188 0.99536 0.90019 1.21260 1.03555 0.93337 1.10920 1.20198 0.97604 0.70571 0.83328 1.92942 1.97470 1.44093 1.84848 1.92965 1.97729 1.60650 1.66737 0.87150 0.81539 0.83913 0.82440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.69 -28.08 13.13 23.18 0.30 -27.77 14 2 C -0.02 -0.68 5.50 87.14 0.48 -0.20 14 3 Si 1.13 27.35 30.06 68.60 2.06 29.42 14 4 H -0.26 -6.05 7.11 99.48 0.71 -5.34 14 5 H -0.23 -4.66 7.11 99.48 0.71 -3.95 14 6 H -0.27 -6.68 7.11 99.48 0.71 -5.97 14 7 C -0.30 -10.88 7.99 25.07 0.20 -10.68 14 8 H 0.15 4.40 6.26 -2.91 -0.02 4.38 14 9 C 0.15 6.27 6.19 40.16 0.25 6.52 14 10 N -0.53 -22.99 7.71 -188.86 -1.46 -24.45 14 11 C 0.23 10.10 10.75 85.14 0.92 11.01 14 12 C -0.20 -9.22 6.95 36.79 0.26 -8.96 14 13 N 0.05 2.64 4.98 -45.49 -0.23 2.41 14 14 O -0.34 -17.86 19.21 3.50 0.07 -17.79 14 15 O -0.32 -16.89 19.18 3.51 0.07 -16.83 14 16 C 0.02 0.77 9.03 22.43 0.20 0.97 14 17 C -0.28 -10.93 5.80 -19.17 -0.11 -11.04 14 18 C 0.34 10.29 5.13 71.23 0.37 10.66 14 19 F -0.21 -6.91 16.31 44.97 0.73 -6.18 14 20 F -0.20 -6.41 14.66 44.97 0.66 -5.75 14 21 H 0.31 13.75 6.46 -92.70 -0.60 13.15 14 22 H 0.17 6.84 7.59 -2.91 -0.02 6.81 14 23 H 0.14 5.84 7.06 -2.91 -0.02 5.82 14 24 H 0.16 3.44 8.14 -2.39 -0.02 3.42 14 Total: -1.00 -56.54 239.40 6.21 -50.34 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 1.44 Total: 18.33 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 2.56 Total: -1.72 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -1.38 Total: -49.81 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: 0.13 Total: -34.62 kcal Atomic # 9 Polarization: -13.32 SS G_CDS: 1.39 Total: -11.93 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: 2.06 Total: 29.42 kcal Total: -56.54 6.21 -50.34 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238690681.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.148 kcal (2) G-P(sol) polarization free energy of solvation -56.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds