Wall clock time and date at job start Mon Mar 30 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29588 * 1 3 3 Si 1.86807 * 119.99740 * 2 1 4 4 H 1.48496 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47176 * 300.00336 * 3 2 1 6 6 H 1.48502 * 109.47038 * 60.00174 * 3 2 1 7 7 C 1.46360 * 120.00368 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99958 * 180.02562 * 7 2 1 9 9 C 1.41029 * 120.00052 * 359.97438 * 7 2 1 10 10 C 1.40851 * 119.82545 * 180.02562 * 9 7 2 11 11 C 1.38455 * 118.95922 * 179.97438 * 10 9 7 12 12 C 1.38698 * 118.54962 * 0.24779 * 11 10 9 13 13 C 1.50698 * 120.22278 * 179.74997 * 12 11 10 14 14 F 1.39895 * 109.47561 * 13.84133 * 13 12 11 15 15 F 1.39899 * 109.46768 * 133.84461 * 13 12 11 16 16 C 1.39488 * 119.53914 * 359.50573 * 12 11 10 17 17 N 1.48019 * 119.48144 * 180.22824 * 16 12 11 18 18 O 1.31701 * 119.99809 * 329.12191 * 17 16 12 19 19 O 1.31702 * 120.00113 * 149.12141 * 17 16 12 20 20 N 1.30971 * 121.03852 * 0.50644 * 16 12 11 21 21 H 0.96996 * 120.00329 * 359.97438 * 1 2 3 22 22 H 1.07991 * 120.52085 * 0.02562 * 10 9 7 23 23 H 1.08001 * 120.71964 * 179.97438 * 11 10 9 24 24 H 1.09001 * 109.47037 * 253.83410 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2959 0.0000 0.0000 3 14 2.2298 1.6178 0.0000 4 1 3.6898 1.3466 0.0006 5 1 1.8710 2.3966 -1.2125 6 1 1.8711 2.3965 1.2125 7 6 2.0278 -1.2675 -0.0006 8 1 3.1078 -1.2674 -0.0001 9 6 1.3227 -2.4889 -0.0006 10 6 2.0308 -3.7065 -0.0006 11 6 1.3205 -4.8950 0.0000 12 6 -0.0653 -4.8390 -0.0048 13 6 -0.8758 -6.1095 -0.0100 14 9 -0.0481 -7.1920 0.3063 15 9 -1.9001 -6.0130 0.9379 16 6 -0.7035 -3.5987 0.0005 17 7 -2.1826 -3.5405 0.0006 18 8 -2.8789 -4.4902 -0.5890 19 8 -2.8022 -2.5390 0.5902 20 7 -0.0147 -2.4848 0.0000 21 1 -0.4850 0.8400 0.0004 22 1 3.1107 -3.7129 -0.0002 23 1 1.8345 -5.8448 -0.0004 24 1 -1.3089 -6.2600 -0.9989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238697809.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:22 Heat of formation + Delta-G solvation = -62.709824 kcal Electronic energy + Delta-G solvation = -17463.904191 eV Core-core repulsion = 14016.920780 eV Total energy + Delta-G solvation = -3446.983411 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.045 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.96036 -47.98503 -41.10131 -39.41458 -35.92831 -35.52296 -33.53615 -33.11617 -29.15886 -28.44272 -25.53896 -23.73006 -23.00449 -20.32814 -19.47189 -19.03969 -18.40789 -18.24119 -18.09647 -17.03861 -17.00400 -16.27674 -15.37895 -14.87314 -14.65334 -14.55372 -14.40497 -14.16407 -13.57344 -13.08985 -13.04517 -13.03114 -12.66336 -12.35833 -12.01457 -11.89858 -11.80334 -11.50709 -10.81454 -10.35063 -10.32661 -8.81497 -6.96128 -1.57930 0.05170 0.24624 0.63887 1.36608 1.41477 1.56819 2.06313 2.33579 2.82873 3.24746 3.30434 3.53944 3.77196 3.98626 4.06253 4.30217 4.53633 4.69946 4.88332 5.04060 5.17183 5.52739 5.58812 5.85423 6.09060 6.33520 7.30093 7.94687 Molecular weight = 244.04amu Principal moments of inertia in cm(-1) A = 0.033141 B = 0.008206 C = 0.006732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.674440 B = 3411.253515 C = 4158.208936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.715 5.715 2 C 0.010 3.990 3 Si 1.007 2.993 4 H -0.233 1.233 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.395 4.395 8 H 0.136 0.864 9 C 0.208 3.792 10 C -0.232 4.232 11 C -0.017 4.017 12 C -0.332 4.332 13 C 0.335 3.665 14 F -0.200 7.200 15 F -0.221 7.221 16 C 0.264 3.736 17 N -0.015 5.015 18 O -0.144 6.144 19 O -0.209 6.209 20 N -0.488 5.488 21 H 0.300 0.700 22 H 0.160 0.840 23 H 0.170 0.830 24 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.106 -3.015 -1.736 7.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.332 5.332 2 C -0.221 4.221 3 Si 0.825 3.175 4 H -0.155 1.155 5 H -0.189 1.189 6 H -0.191 1.191 7 C -0.422 4.422 8 H 0.153 0.847 9 C 0.089 3.911 10 C -0.256 4.256 11 C -0.039 4.039 12 C -0.345 4.345 13 C 0.281 3.719 14 F -0.181 7.181 15 F -0.202 7.202 16 C 0.035 3.965 17 N 0.467 4.533 18 O -0.349 6.349 19 O -0.397 6.397 20 N -0.207 5.207 21 H 0.112 0.888 22 H 0.178 0.822 23 H 0.187 0.813 24 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 6.183 -2.021 -1.654 6.711 hybrid contribution -0.509 -0.033 0.236 0.562 sum 5.674 -2.054 -1.418 6.198 Atomic orbital electron populations 1.69519 1.10698 1.32210 1.20735 1.28871 0.95508 1.05927 0.91797 0.84766 0.80143 0.73599 0.79039 1.15494 1.18943 1.19120 1.21952 0.96157 0.88096 1.35994 0.84665 1.18903 0.84272 0.95328 0.92615 1.22376 1.01624 0.91255 1.10344 1.21099 0.89820 1.00025 0.92983 1.20357 0.96509 0.91035 1.26603 1.20223 0.78528 0.81431 0.91694 1.92912 1.73432 1.57037 1.94739 1.92956 1.61464 1.96497 1.69296 1.20577 0.78209 0.92493 1.05212 1.50993 1.05668 0.99813 0.96787 1.96079 1.67428 1.28946 1.42496 1.96233 1.74026 1.23408 1.46026 1.66996 1.10141 1.25116 1.18492 0.88781 0.82205 0.81309 0.83974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -35.20 11.60 23.18 0.27 -34.93 14 2 C 0.01 0.42 5.67 87.14 0.49 0.91 14 3 Si 1.01 31.07 29.64 68.60 2.03 33.10 14 4 H -0.23 -6.40 7.11 99.48 0.71 -5.69 14 5 H -0.26 -8.06 7.11 99.48 0.71 -7.36 14 6 H -0.27 -8.21 7.11 99.48 0.71 -7.51 14 7 C -0.40 -17.40 9.41 25.07 0.24 -17.16 14 8 H 0.14 4.99 7.94 -2.91 -0.02 4.97 14 9 C 0.21 9.91 6.56 40.18 0.26 10.18 14 10 C -0.23 -9.03 9.86 22.96 0.23 -8.80 14 11 C -0.02 -0.63 9.51 22.43 0.21 -0.41 14 12 C -0.33 -14.05 5.74 -19.45 -0.11 -14.16 14 13 C 0.34 12.30 4.54 71.24 0.32 12.62 14 14 F -0.20 -6.60 16.16 44.97 0.73 -5.88 14 15 F -0.22 -9.27 14.76 44.97 0.66 -8.60 14 16 C 0.26 13.32 7.50 130.20 0.98 14.30 14 17 N -0.02 -0.79 4.42 -49.60 -0.22 -1.01 14 18 O -0.14 -6.68 16.13 3.51 0.06 -6.62 14 19 O -0.21 -11.56 19.88 3.51 0.07 -11.49 14 20 N -0.49 -26.13 7.87 -179.57 -1.41 -27.54 14 21 H 0.30 13.28 8.27 -92.71 -0.77 12.52 14 22 H 0.16 4.96 8.06 -2.91 -0.02 4.94 14 23 H 0.17 4.85 7.34 -2.91 -0.02 4.83 14 24 H 0.14 4.50 7.62 -2.39 -0.02 4.48 14 Total: -1.00 -60.40 239.79 6.08 -54.32 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.27 Total: 11.18 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 2.62 Total: -2.53 kcal Atomic # 7 Polarization: -62.12 SS G_CDS: -1.36 Total: -63.48 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.13 Total: -18.11 kcal Atomic # 9 Polarization: -15.87 SS G_CDS: 1.39 Total: -14.48 kcal Atomic # 14 Polarization: 31.07 SS G_CDS: 2.03 Total: 33.10 kcal Total: -60.40 6.08 -54.32 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238697809.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.390 kcal (2) G-P(sol) polarization free energy of solvation -60.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds