Wall clock time and date at job start Mon Mar 30 2020 04:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.62845 * 2 1 4 4 H 1.09004 * 111.02749 * 171.46487 * 3 2 1 5 5 C 1.55157 * 111.13483 * 295.70481 * 3 2 1 6 6 C 1.52934 * 108.96157 * 159.34991 * 5 3 2 7 7 C 1.53708 * 112.49497 * 329.89588 * 6 5 3 8 8 S 1.83405 * 104.96494 * 2.82889 * 7 6 5 9 9 O 1.43760 * 109.62934 * 239.61024 * 2 1 3 10 10 C 1.44586 * 104.91817 * 264.67986 * 9 2 1 11 11 C 1.54914 * 101.63588 * 323.73248 * 10 9 2 12 12 H 1.09003 * 110.69802 * 277.24180 * 11 10 9 13 13 C 1.50705 * 110.84595 * 154.10875 * 11 10 9 14 14 H 1.08007 * 119.99378 * 4.80263 * 13 11 10 15 15 C 1.37874 * 120.00488 * 184.80097 * 13 11 10 16 16 N 1.31515 * 120.00090 * 180.02562 * 15 13 11 17 17 Si 1.86796 * 119.99680 * 0.02562 * 15 13 11 18 18 H 1.48506 * 109.47131 * 90.00015 * 17 15 13 19 19 H 1.48502 * 109.46874 * 209.99530 * 17 15 13 20 20 H 1.48493 * 109.47382 * 329.99563 * 17 15 13 21 21 O 1.43371 * 109.63182 * 120.39711 * 2 1 3 22 22 H 1.08996 * 109.47515 * 59.99892 * 1 2 3 23 23 H 1.09006 * 109.47526 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47229 * 299.99555 * 1 2 3 25 25 H 1.08998 * 109.59816 * 279.28106 * 5 3 2 26 26 H 1.09001 * 109.59849 * 39.41764 * 5 3 2 27 27 H 1.08998 * 108.89005 * 90.69352 * 6 5 3 28 28 H 1.09008 * 108.88843 * 209.24489 * 6 5 3 29 29 H 1.08998 * 110.34289 * 121.69540 * 7 6 5 30 30 H 1.09000 * 110.34431 * 243.84898 * 7 6 5 31 31 H 1.08997 * 110.94998 * 205.68272 * 10 9 2 32 32 H 1.09004 * 111.12117 * 81.85318 * 10 9 2 33 33 H 0.96996 * 119.99782 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 1 3.1230 1.4714 0.1510 5 6 1.6406 2.1788 -1.3040 6 6 1.7020 3.6874 -1.0607 7 6 1.3988 4.0605 0.3993 8 16 1.1690 2.4572 1.2598 9 8 2.0129 -0.6850 -1.1680 10 6 2.2600 -2.0403 -0.7292 11 6 2.7855 -1.8118 0.7101 12 1 3.8484 -1.5704 0.6983 13 6 2.5250 -3.0188 1.5741 14 1 2.1014 -3.9124 1.1398 15 6 2.8275 -2.9824 2.9187 16 7 2.6006 -4.0359 3.6725 17 14 3.5595 -1.4367 3.6698 18 1 2.4659 -0.5518 4.1456 19 1 4.4299 -1.8070 4.8145 20 1 4.3644 -0.7225 2.6466 21 8 2.0117 -0.6833 1.1647 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 2.3293 1.9091 -2.1046 26 1 0.6268 1.8948 -1.5862 27 1 2.6990 4.0459 -1.3167 28 1 0.9744 4.1789 -1.7067 29 1 2.2367 4.6064 0.8328 30 1 0.4884 4.6571 0.4568 31 1 3.0174 -2.5189 -1.3498 32 1 1.3396 -2.6242 -0.7203 33 1 2.8130 -4.0102 4.6186 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258447345.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:21 Heat of formation + Delta-G solvation = -91.210938 kcal Electronic energy + Delta-G solvation = -16658.027415 eV Core-core repulsion = 14003.021927 eV Total energy + Delta-G solvation = -2655.005487 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.78423 -36.07924 -34.21995 -32.89820 -31.73518 -28.74641 -27.83435 -25.30166 -24.82574 -21.50344 -21.04672 -19.80470 -17.10495 -16.69537 -16.35244 -16.01251 -15.01177 -14.55436 -14.29464 -14.00889 -13.44953 -13.21871 -12.91747 -12.54082 -12.32239 -12.05991 -11.84735 -11.79560 -11.52816 -11.39873 -11.15846 -10.70440 -10.62083 -10.41181 -9.87636 -9.69791 -9.65597 -9.26265 -8.71337 -8.56699 -7.42839 -6.20252 -4.32232 1.90524 2.49012 3.37914 3.45923 3.57663 4.23737 4.37222 4.46951 4.62353 4.75039 5.00539 5.09235 5.22769 5.29444 5.37964 5.51166 5.61560 5.76248 5.82201 5.86229 5.94436 5.96483 6.01862 6.17479 6.25303 6.33604 6.48524 6.68797 7.04138 7.49478 8.06540 8.29113 8.76622 9.41315 10.89371 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.030496 B = 0.009084 C = 0.007723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.944079 B = 3081.509636 C = 3624.684827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.273 3.727 3 C -0.040 4.040 4 H 0.099 0.901 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.085 4.085 8 S -0.257 6.257 9 O -0.387 6.387 10 C 0.033 3.967 11 C 0.144 3.856 12 H 0.046 0.954 13 C -0.528 4.528 14 H 0.084 0.916 15 C 0.089 3.911 16 N -0.886 5.886 17 Si 0.897 3.103 18 H -0.268 1.268 19 H -0.296 1.296 20 H -0.266 1.266 21 O -0.378 6.378 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.071 0.929 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 13.774 -9.540 16.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.194 3.806 3 C -0.169 4.169 4 H 0.118 0.882 5 C -0.156 4.156 6 C -0.165 4.165 7 C -0.233 4.233 8 S -0.030 6.030 9 O -0.308 6.308 10 C -0.043 4.043 11 C 0.089 3.911 12 H 0.063 0.937 13 C -0.564 4.564 14 H 0.102 0.898 15 C -0.117 4.117 16 N -0.522 5.522 17 Si 0.725 3.275 18 H -0.194 1.194 19 H -0.223 1.223 20 H -0.191 1.191 21 O -0.300 6.300 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.336 13.585 -8.307 16.093 hybrid contribution 0.962 0.904 -0.521 1.419 sum -1.374 14.488 -8.828 17.022 Atomic orbital electron populations 1.22386 0.94168 1.02988 1.02842 1.22682 0.92678 0.87575 0.77639 1.24478 1.02212 0.96055 0.94128 0.88236 1.22423 1.03653 0.92683 0.96873 1.21955 1.02786 0.96459 0.95278 1.23968 1.04937 0.97656 0.96765 1.88106 1.75247 1.03906 1.35752 1.89015 1.86307 1.23240 1.32263 1.24337 1.00884 0.82684 0.96421 1.21900 0.92208 0.85468 0.91477 0.93684 1.20860 1.45132 0.96508 0.93939 0.89844 1.25001 0.93558 0.96184 0.96941 1.69908 1.46388 1.29338 1.06599 0.86455 0.79620 0.83076 0.78350 1.19371 1.22296 1.19096 1.89088 1.70318 1.43064 1.27536 0.91729 0.91643 0.89997 0.89717 0.89950 0.91278 0.90533 0.89596 0.88610 0.88767 0.91082 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.57 37.16 0.32 -2.65 16 2 C 0.27 5.39 0.91 -26.74 -0.02 5.36 16 3 C -0.04 -0.68 3.16 -25.59 -0.08 -0.76 16 4 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 5 C -0.12 -1.52 5.38 -25.62 -0.14 -1.66 16 6 C -0.13 -1.31 6.33 -26.40 -0.17 -1.48 16 7 C -0.08 -0.98 7.38 37.53 0.28 -0.70 16 8 S -0.26 -4.29 20.76 -107.50 -2.23 -6.53 16 9 O -0.39 -7.46 10.60 -59.05 -0.63 -8.08 16 10 C 0.03 0.66 7.33 38.17 0.28 0.94 16 11 C 0.14 3.50 2.87 -26.87 -0.08 3.42 16 12 H 0.05 1.11 7.36 -51.93 -0.38 0.73 16 13 C -0.53 -14.84 9.42 -34.44 -0.32 -15.17 16 14 H 0.08 2.46 8.03 -52.48 -0.42 2.04 16 15 C 0.09 2.60 5.47 -17.82 -0.10 2.50 16 16 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 17 Si 0.90 23.37 26.33 -169.99 -4.48 18.89 16 18 H -0.27 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 20 H -0.27 -6.77 6.59 56.52 0.37 -6.39 16 21 O -0.38 -9.16 8.47 -59.05 -0.50 -9.66 16 22 H 0.06 0.97 6.37 -51.93 -0.33 0.64 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.08 1.50 6.64 -51.93 -0.34 1.16 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.06 6.14 -51.93 -0.32 0.74 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 32 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 33 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 273.77 15.07 4.13 4.13 Total: -1.00 -31.06 273.77 -7.73 -38.79 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -4.76 Total: -1.18 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.03 Total: -10.18 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.77 Total: -26.18 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -1.13 Total: -17.74 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -4.48 Total: 18.89 kcal Atomic # 16 Polarization: -4.29 SS G_CDS: -2.23 Total: -6.53 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.06 -7.73 -38.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258447345.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.424 kcal (2) G-P(sol) polarization free energy of solvation -31.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds