Wall clock time and date at job start Mon Mar 30 2020 04:12:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 119.99975 * 2 1 4 4 H 1.48502 * 109.47347 * 239.99047 * 3 2 1 5 5 H 1.48495 * 109.47044 * 359.97438 * 3 2 1 6 6 H 1.48509 * 109.47231 * 119.99368 * 3 2 1 7 7 C 1.37879 * 120.00234 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99624 * 0.02562 * 7 2 1 10 10 H 1.08994 * 110.28713 * 302.11898 * 9 7 2 11 11 C 1.54459 * 110.31760 * 180.02562 * 9 7 2 12 12 O 1.44836 * 102.89621 * 219.20701 * 11 9 7 13 13 C 1.44387 * 103.23447 * 36.60907 * 12 11 9 14 14 H 1.09002 * 110.11161 * 79.95657 * 13 12 11 15 15 C 1.52997 * 110.11173 * 201.54125 * 13 12 11 16 16 C 1.53005 * 109.47421 * 292.70037 * 15 13 12 17 17 H 1.09002 * 108.85168 * 307.88498 * 16 15 13 18 18 C 1.52929 * 108.89222 * 189.43756 * 16 15 13 19 19 C 1.55154 * 108.96341 * 209.10639 * 18 16 15 20 20 S 1.83994 * 100.90860 * 41.44048 * 19 18 16 21 21 C 1.53715 * 108.88153 * 66.45605 * 16 15 13 22 22 O 1.43786 * 106.17319 * 320.78019 * 13 12 11 23 23 H 0.96998 * 119.99958 * 0.02562 * 1 2 3 24 24 H 1.08992 * 110.72893 * 100.85279 * 11 9 7 25 25 H 1.08999 * 110.87876 * 337.62220 * 11 9 7 26 26 H 1.08994 * 109.47538 * 52.70536 * 15 13 12 27 27 H 1.09003 * 109.47240 * 172.70519 * 15 13 12 28 28 H 1.09006 * 109.60658 * 329.03612 * 18 16 15 29 29 H 1.08999 * 109.60704 * 89.17496 * 18 16 15 30 30 H 1.08994 * 111.13470 * 283.53093 * 19 18 16 31 31 H 1.09006 * 111.16929 * 159.36406 * 19 18 16 32 32 H 1.09002 * 110.34105 * 242.49352 * 21 16 15 33 33 H 1.08996 * 110.34066 * 4.75108 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5910 -2.5544 0.8661 11 6 2.2372 -3.6879 0.0018 12 8 1.6024 -4.6356 -0.8907 13 6 1.0135 -3.7921 -1.9039 14 1 1.7720 -3.4869 -2.6247 15 6 -0.1185 -4.5361 -2.6151 16 6 0.4635 -5.6967 -3.4246 17 1 1.2621 -5.3163 -4.0615 18 6 -0.6362 -6.2827 -4.3110 19 6 -0.3466 -7.7890 -4.5444 20 16 0.1964 -8.3037 -2.8635 21 6 1.0520 -6.7339 -2.4546 22 8 0.4945 -2.6416 -1.2151 23 1 -0.4850 0.8400 -0.0004 24 1 2.3351 -4.1069 1.0032 25 1 3.2103 -3.3857 -0.3853 26 1 -0.8191 -4.9242 -1.8758 27 1 -0.6391 -3.8514 -3.2846 28 1 -1.6023 -6.1680 -3.8194 29 1 -0.6517 -5.7608 -5.2678 30 1 0.4508 -7.9274 -5.2744 31 1 -1.2489 -8.3213 -4.8460 32 1 2.1256 -6.8350 -2.6137 33 1 0.8462 -6.4477 -1.4233 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258701267.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:37 Heat of formation + Delta-G solvation = -104.966296 kcal Electronic energy + Delta-G solvation = -16103.992215 eV Core-core repulsion = 13448.390250 eV Total energy + Delta-G solvation = -2655.601964 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.29360 -36.82246 -33.88865 -32.62644 -31.22902 -28.96628 -27.41287 -24.98080 -24.24326 -21.46387 -21.01369 -19.99900 -16.89041 -16.67047 -15.91540 -15.80571 -15.23199 -14.77228 -14.48301 -13.98523 -13.60176 -13.24650 -12.68585 -12.47596 -12.32886 -11.89558 -11.67846 -11.62344 -11.30786 -11.00740 -10.94605 -10.88378 -10.61344 -10.47987 -10.32874 -9.79149 -9.44584 -9.23155 -8.65625 -8.15213 -7.63465 -6.12402 -4.29033 1.94614 2.44121 3.25096 3.30344 3.32046 4.32064 4.42247 4.53691 4.61484 4.91064 5.01177 5.16689 5.20925 5.40983 5.46931 5.62603 5.65569 5.74705 5.81541 5.91946 6.00576 6.14144 6.16515 6.26980 6.31994 6.46430 6.53417 6.89818 7.41276 7.73766 8.08719 8.36566 8.82080 9.44119 10.94504 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.054371 B = 0.005215 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.856180 B = 5367.466583 C = 5622.686463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.081 3.919 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.184 3.816 10 H 0.052 0.948 11 C 0.020 3.980 12 O -0.398 6.398 13 C 0.225 3.775 14 H 0.053 0.947 15 C -0.109 4.109 16 C -0.092 4.092 17 H 0.077 0.923 18 C -0.120 4.120 19 C -0.066 4.066 20 S -0.324 6.324 21 C -0.050 4.050 22 O -0.367 6.367 23 H 0.264 0.736 24 H 0.084 0.916 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.285 -10.895 -7.627 13.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.590 4.590 8 H 0.081 0.919 9 C 0.129 3.871 10 H 0.070 0.930 11 C -0.056 4.056 12 O -0.319 6.319 13 C 0.129 3.871 14 H 0.070 0.930 15 C -0.147 4.147 16 C -0.112 4.112 17 H 0.095 0.905 18 C -0.159 4.159 19 C -0.214 4.214 20 S -0.098 6.098 21 C -0.198 4.198 22 O -0.288 6.288 23 H 0.074 0.926 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.104 0.896 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.215 -11.922 -7.044 13.849 hybrid contribution 0.892 2.080 -0.633 2.351 sum 0.677 -9.842 -7.677 12.501 Atomic orbital electron populations 1.70015 1.06126 1.27044 1.46539 1.25058 0.94776 0.99430 0.93314 0.86632 0.79691 0.82686 0.78804 1.20027 1.21035 1.19947 1.21219 0.92777 0.90386 1.54609 0.91926 1.21054 0.88749 0.92425 0.84894 0.93038 1.24412 0.97590 0.89898 0.93695 1.89211 1.71964 1.31102 1.39642 1.24028 0.91414 0.81868 0.89771 0.93007 1.21863 0.97886 0.95971 0.98997 1.21582 0.97760 0.96029 0.95805 0.90458 1.22454 1.00060 0.93132 1.00282 1.24283 1.03875 0.98108 0.95137 1.87784 1.73283 1.27770 1.20973 1.24243 1.01015 0.90014 1.04509 1.89171 1.59654 1.43524 1.36453 0.92616 0.89762 0.92047 0.90361 0.89995 0.90100 0.90175 0.89501 0.87991 0.89627 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.18 13.05 55.43 0.72 -24.45 16 2 C 0.08 2.24 5.43 -17.82 -0.10 2.15 16 3 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.55 -15.09 8.78 -34.44 -0.30 -15.39 16 8 H 0.06 1.64 7.55 -52.49 -0.40 1.24 16 9 C 0.18 4.69 3.52 -27.12 -0.10 4.59 16 10 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 11 C 0.02 0.42 7.34 37.92 0.28 0.70 16 12 O -0.40 -7.84 8.48 -59.28 -0.50 -8.34 16 13 C 0.23 4.53 3.85 37.16 0.14 4.67 16 14 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 15 C -0.11 -1.77 4.56 -26.73 -0.12 -1.89 16 16 C -0.09 -1.21 2.66 -90.28 -0.24 -1.45 16 17 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 18 C -0.12 -1.30 5.78 -25.63 -0.15 -1.45 16 19 C -0.07 -0.68 7.52 38.30 0.29 -0.39 16 20 S -0.32 -4.46 23.23 -107.50 -2.50 -6.96 16 21 C -0.05 -0.72 5.93 37.53 0.22 -0.49 16 22 O -0.37 -9.40 10.64 -59.28 -0.63 -10.03 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 25 H 0.06 1.24 7.69 -51.93 -0.40 0.84 16 26 H 0.08 1.34 8.10 -51.93 -0.42 0.91 16 27 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 28 H 0.08 0.90 7.83 -51.93 -0.41 0.50 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.12 2.01 5.65 -51.93 -0.29 1.71 16 LS Contribution 279.96 15.07 4.22 4.22 Total: -1.00 -29.76 279.96 -8.63 -38.40 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.85 Total: 0.30 kcal Atomic # 6 Polarization: -8.88 SS G_CDS: -0.07 Total: -8.95 kcal Atomic # 7 Polarization: -25.18 SS G_CDS: 0.72 Total: -24.45 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.13 Total: -18.38 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: -4.46 SS G_CDS: -2.50 Total: -6.96 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.76 -8.63 -38.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258701267.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.570 kcal (2) G-P(sol) polarization free energy of solvation -29.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds