Wall clock time and date at job start Mon Mar 30 2020 04:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99843 * 2 1 4 4 H 1.48502 * 109.47167 * 270.00153 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99914 * 3 2 1 6 6 H 1.48496 * 109.47009 * 149.99948 * 3 2 1 7 7 C 1.37867 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99881 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47368 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.75215 * 303.27826 * 10 9 7 12 12 C 1.54913 * 110.69731 * 180.10662 * 10 9 7 13 13 O 1.44785 * 101.72043 * 206.04165 * 12 10 9 14 14 C 1.43752 * 104.81900 * 36.10403 * 13 12 10 15 15 H 1.08999 * 109.63139 * 95.56049 * 14 13 12 16 16 C 1.53002 * 109.63255 * 215.80883 * 14 13 12 17 17 H 1.09000 * 110.75465 * 181.40540 * 16 14 13 18 18 C 1.55128 * 110.85465 * 305.12281 * 16 14 13 19 19 C 1.53861 * 106.89586 * 160.29429 * 18 16 14 20 20 C 1.54274 * 108.92731 * 312.74415 * 19 18 16 21 21 S 1.83099 * 104.65031 * 27.95473 * 20 19 18 22 22 O 1.43375 * 108.78880 * 335.68545 * 14 13 12 23 23 H 0.96999 * 119.99898 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47708 * 59.99772 * 9 7 2 25 25 H 1.09011 * 109.46831 * 299.99341 * 9 7 2 26 26 H 1.08999 * 110.97383 * 324.14546 * 12 10 9 27 27 H 1.08996 * 110.98005 * 87.93125 * 12 10 9 28 28 H 1.08998 * 109.97973 * 279.65667 * 18 16 14 29 29 H 1.09009 * 109.97587 * 40.93857 * 18 16 14 30 30 H 1.09004 * 109.60899 * 192.82761 * 19 18 16 31 31 H 1.08990 * 109.60729 * 72.67005 * 19 18 16 32 32 H 1.09001 * 110.40084 * 269.16299 * 20 19 18 33 33 H 1.09000 * 110.39827 * 146.74640 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.6228 -3.1872 0.8518 12 6 5.5704 -2.6695 0.0032 13 8 5.8386 -3.9487 -0.6197 14 6 4.8126 -4.0948 -1.6159 15 1 5.1901 -3.7601 -2.5821 16 6 4.3944 -5.5635 -1.7116 17 1 3.6336 -5.6992 -2.4803 18 6 5.6236 -6.4714 -1.9786 19 6 5.2224 -7.8991 -1.5684 20 6 4.5469 -7.8504 -0.1823 21 16 3.8012 -6.1807 -0.0890 22 8 3.6838 -3.2963 -1.2369 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8896 26 1 5.9794 -1.8526 -0.5914 27 1 5.9592 -2.6420 1.0211 28 1 5.8819 -6.4469 -3.0372 29 1 6.4710 -6.1364 -1.3803 30 1 6.1107 -8.5291 -1.5205 31 1 4.5263 -8.3080 -2.3006 32 1 5.2880 -7.9801 0.6064 33 1 3.7746 -8.6161 -0.1089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260075714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:28 Heat of formation + Delta-G solvation = -95.518342 kcal Electronic energy + Delta-G solvation = -16079.052811 eV Core-core repulsion = 13423.860541 eV Total energy + Delta-G solvation = -2655.192270 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.94053 -36.14033 -34.59778 -33.18150 -31.57063 -29.83857 -27.04648 -25.50450 -23.02433 -22.45694 -20.77738 -20.44092 -17.08687 -16.86134 -16.54635 -16.10895 -15.31162 -14.90044 -14.36008 -14.14555 -13.59328 -13.26650 -13.13773 -12.65593 -12.46688 -12.16956 -11.90245 -11.78770 -11.67802 -11.40094 -11.24187 -10.92317 -10.50983 -10.15066 -9.86823 -9.59822 -9.58345 -9.28713 -8.97099 -8.51873 -7.37716 -5.99853 -3.97581 1.92252 2.55175 3.31296 3.38364 3.39333 3.83501 4.19003 4.46124 4.56388 4.73404 4.79512 5.05516 5.13694 5.20138 5.32939 5.34016 5.44220 5.53182 5.59724 5.62504 5.65997 5.74059 5.77606 5.97823 6.10695 6.37237 6.57873 6.96491 7.20565 7.62643 7.78470 8.57365 9.08383 9.60306 11.13770 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.043137 B = 0.006065 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.931762 B = 4615.246062 C = 4934.165367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.076 3.924 11 H 0.082 0.918 12 C 0.017 3.983 13 O -0.375 6.375 14 C 0.245 3.755 15 H 0.087 0.913 16 C -0.059 4.059 17 H 0.110 0.890 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.089 4.089 21 S -0.244 6.244 22 O -0.356 6.356 23 H 0.262 0.738 24 H 0.033 0.967 25 H 0.021 0.979 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.564 -12.779 -3.063 18.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.548 4.548 8 H 0.095 0.905 9 C -0.050 4.050 10 C 0.019 3.981 11 H 0.100 0.900 12 C -0.059 4.059 13 O -0.296 6.296 14 C 0.147 3.853 15 H 0.104 0.896 16 C -0.188 4.188 17 H 0.128 0.872 18 C -0.160 4.160 19 C -0.164 4.164 20 C -0.237 4.237 21 S -0.018 6.018 22 O -0.277 6.277 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.039 0.961 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 12.708 -12.293 -2.268 17.825 hybrid contribution 0.992 0.436 -0.915 1.418 sum 13.699 -11.857 -3.183 18.395 Atomic orbital electron populations 1.69916 1.06228 1.26733 1.51180 1.25008 0.94749 0.98921 0.94784 0.86822 0.80273 0.83944 0.78479 1.20298 1.21309 1.19143 1.20981 0.88706 0.94790 1.50320 0.90550 1.19760 0.98653 0.89470 0.97157 1.23819 0.91077 0.96616 0.86570 0.90033 1.24573 0.96944 0.85274 0.99152 1.89121 1.49768 1.38056 1.52619 1.23614 0.79846 0.89212 0.92600 0.89596 1.24719 0.99810 0.96895 0.97403 0.87231 1.22577 0.97738 0.92946 1.02773 1.22257 1.01131 0.97431 0.95560 1.24011 1.02267 0.97445 0.99995 1.88071 1.71495 1.14777 1.27471 1.89063 1.35933 1.61642 1.41019 0.92766 0.94903 0.96118 0.91134 0.87893 0.90037 0.89286 0.90231 0.90902 0.89350 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.69 27.47 -169.99 -4.67 17.03 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.27 -6.20 6.54 56.52 0.37 -5.84 16 7 C -0.51 -14.91 9.51 -34.44 -0.33 -15.24 16 8 H 0.08 2.48 7.99 -52.49 -0.42 2.06 16 9 C -0.01 -0.32 3.82 -27.88 -0.11 -0.42 16 10 C 0.08 1.59 3.62 -25.72 -0.09 1.49 16 11 H 0.08 1.80 8.14 -51.93 -0.42 1.37 16 12 C 0.02 0.28 7.40 38.17 0.28 0.56 16 13 O -0.38 -6.15 9.99 -59.04 -0.59 -6.74 16 14 C 0.25 4.07 3.80 37.16 0.14 4.21 16 15 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 16 C -0.06 -0.86 3.39 -25.60 -0.09 -0.95 16 17 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 18 C -0.12 -1.32 5.85 -25.16 -0.15 -1.47 16 19 C -0.13 -1.17 6.39 -25.62 -0.16 -1.34 16 20 C -0.09 -0.99 7.34 37.82 0.28 -0.71 16 21 S -0.24 -3.94 22.15 -107.50 -2.38 -6.32 16 22 O -0.36 -7.62 10.48 -59.04 -0.62 -8.24 16 23 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 24 H 0.03 0.76 7.20 -51.93 -0.37 0.38 16 25 H 0.02 0.49 7.57 -51.92 -0.39 0.10 16 26 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 27 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.05 7.24 -51.92 -0.38 0.68 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 281.00 15.07 4.23 4.23 Total: -1.00 -32.60 281.00 -8.52 -41.12 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -4.95 Total: -1.52 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: -0.32 Total: -11.99 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.77 Total: -27.56 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.21 Total: -14.98 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Atomic # 16 Polarization: -3.94 SS G_CDS: -2.38 Total: -6.32 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.60 -8.52 -41.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.397 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds