Wall clock time and date at job start Mon Mar 30 2020 04:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86806 * 119.99843 * 2 1 4 4 H 1.48502 * 109.47167 * 270.00153 * 3 2 1 5 5 H 1.48501 * 109.47116 * 29.99914 * 3 2 1 6 6 H 1.48496 * 109.47009 * 149.99948 * 3 2 1 7 7 C 1.37867 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99881 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00117 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.47368 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.75215 * 303.27826 * 10 9 7 12 12 C 1.54913 * 110.69731 * 180.10662 * 10 9 7 13 13 O 1.44785 * 101.72043 * 206.04165 * 12 10 9 14 14 C 1.43752 * 104.81900 * 36.10403 * 13 12 10 15 15 H 1.08999 * 109.63139 * 95.56049 * 14 13 12 16 16 C 1.53002 * 109.63255 * 215.80883 * 14 13 12 17 17 H 1.09000 * 110.75465 * 181.40540 * 16 14 13 18 18 C 1.55128 * 110.85465 * 305.12281 * 16 14 13 19 19 C 1.53861 * 106.89586 * 160.29429 * 18 16 14 20 20 C 1.54274 * 108.92731 * 312.74415 * 19 18 16 21 21 S 1.83099 * 104.65031 * 27.95473 * 20 19 18 22 22 O 1.43375 * 108.78880 * 335.68545 * 14 13 12 23 23 H 0.96999 * 119.99898 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.47708 * 59.99772 * 9 7 2 25 25 H 1.09011 * 109.46831 * 299.99341 * 9 7 2 26 26 H 1.08999 * 110.97383 * 324.14546 * 12 10 9 27 27 H 1.08996 * 110.98005 * 87.93125 * 12 10 9 28 28 H 1.08998 * 109.97973 * 279.65667 * 18 16 14 29 29 H 1.09009 * 109.97587 * 40.93857 * 18 16 14 30 30 H 1.09004 * 109.60899 * 192.82761 * 19 18 16 31 31 H 1.08990 * 109.60729 * 72.67005 * 19 18 16 32 32 H 1.09001 * 110.40084 * 269.16299 * 20 19 18 33 33 H 1.09000 * 110.39827 * 146.74640 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.6228 -3.1872 0.8518 12 6 5.5704 -2.6695 0.0032 13 8 5.8386 -3.9487 -0.6197 14 6 4.8126 -4.0948 -1.6159 15 1 5.1901 -3.7601 -2.5821 16 6 4.3944 -5.5635 -1.7116 17 1 3.6336 -5.6992 -2.4803 18 6 5.6236 -6.4714 -1.9786 19 6 5.2224 -7.8991 -1.5684 20 6 4.5469 -7.8504 -0.1823 21 16 3.8012 -6.1807 -0.0890 22 8 3.6838 -3.2963 -1.2369 23 1 -0.4850 0.8400 0.0004 24 1 3.8746 -0.6807 0.8905 25 1 3.8752 -0.6796 -0.8896 26 1 5.9794 -1.8526 -0.5914 27 1 5.9592 -2.6420 1.0211 28 1 5.8819 -6.4469 -3.0372 29 1 6.4710 -6.1364 -1.3803 30 1 6.1107 -8.5291 -1.5205 31 1 4.5263 -8.3080 -2.3006 32 1 5.2880 -7.9801 0.6064 33 1 3.7746 -8.6161 -0.1089 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260075714.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:27 Heat of formation + Delta-G solvation = -117.423064 kcal Electronic energy + Delta-G solvation = -16080.002671 eV Core-core repulsion = 13423.860541 eV Total energy + Delta-G solvation = -2656.142130 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34458 -37.11493 -36.05900 -35.15680 -33.28042 -31.21830 -28.67844 -26.57847 -24.82493 -23.60606 -22.20833 -21.70895 -18.98896 -18.25656 -18.08747 -17.30261 -16.77290 -16.29783 -15.90609 -15.18080 -14.94094 -14.76151 -14.68332 -14.19969 -13.79637 -13.73792 -13.36327 -13.26404 -12.98097 -12.52801 -12.41600 -12.28807 -11.90214 -11.73543 -11.65286 -11.44154 -11.02342 -10.78265 -10.73377 -10.52201 -8.64578 -8.27524 -6.32631 0.83763 1.36526 1.39758 1.50777 1.53237 2.36798 2.50099 2.94635 3.09401 3.64507 3.69727 3.78445 3.91150 4.02864 4.08515 4.23033 4.25421 4.36394 4.37988 4.62265 4.70494 4.73871 4.79011 4.92661 4.95719 5.01292 5.08362 5.23383 5.39249 5.60369 6.18387 6.29513 6.73946 7.29576 8.90359 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.043137 B = 0.006065 C = 0.005673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.931762 B = 4615.246062 C = 4934.165367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.958 3.042 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.236 1.236 7 C -0.524 4.524 8 H 0.018 0.982 9 C -0.009 4.009 10 C 0.075 3.925 11 H 0.055 0.945 12 C 0.029 3.971 13 O -0.371 6.371 14 C 0.237 3.763 15 H 0.110 0.890 16 C -0.049 4.049 17 H 0.106 0.894 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.067 4.067 21 S -0.349 6.349 22 O -0.393 6.393 23 H 0.266 0.734 24 H 0.051 0.949 25 H 0.030 0.970 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.947 -12.763 -3.865 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.197 4.197 3 Si 0.780 3.220 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.159 1.159 7 C -0.562 4.562 8 H 0.037 0.963 9 C -0.046 4.046 10 C 0.018 3.982 11 H 0.073 0.927 12 C -0.047 4.047 13 O -0.291 6.291 14 C 0.140 3.860 15 H 0.127 0.873 16 C -0.178 4.178 17 H 0.124 0.876 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.215 4.215 21 S -0.123 6.123 22 O -0.314 6.314 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.049 0.951 26 H 0.109 0.891 27 H 0.145 0.855 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.128 0.872 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 16.117 -12.308 -3.069 20.510 hybrid contribution -0.149 0.285 -0.684 0.756 sum 15.968 -12.023 -3.753 20.337 Atomic orbital electron populations 1.70103 1.08613 1.28185 1.52726 1.26123 0.95723 1.03822 0.94017 0.85555 0.79728 0.77444 0.79264 1.19226 1.20971 1.15850 1.21241 0.91794 0.92783 1.50344 0.96342 1.19683 0.94787 0.92071 0.98066 1.23597 0.94384 0.94357 0.85908 0.92697 1.24549 0.93123 0.85968 1.01070 1.89116 1.49288 1.38112 1.52611 1.23951 0.78796 0.89968 0.93245 0.87320 1.24751 1.01313 0.96380 0.95351 0.87557 1.22583 0.95417 0.92775 1.04312 1.22291 1.02402 0.96872 0.94249 1.24119 1.02367 0.93181 1.01789 1.88423 1.73492 1.20216 1.30200 1.89018 1.38660 1.62681 1.41037 0.92518 0.93140 0.95136 0.89104 0.85504 0.87332 0.89908 0.87187 0.89907 0.88356 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.38 13.96 21.44 0.30 -62.08 16 2 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 3 Si 0.96 44.38 27.47 68.60 1.88 46.26 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 7 C -0.52 -31.85 9.51 25.60 0.24 -31.61 16 8 H 0.02 1.28 7.99 -2.91 -0.02 1.26 16 9 C -0.01 -0.42 3.82 29.85 0.11 -0.30 16 10 C 0.07 3.14 3.62 31.25 0.11 3.26 16 11 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 12 C 0.03 0.89 7.40 72.64 0.54 1.43 16 13 O -0.37 -11.46 9.99 -126.22 -1.26 -12.72 16 14 C 0.24 7.66 3.80 71.98 0.27 7.94 16 15 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 16 C -0.05 -1.39 3.39 31.32 0.11 -1.28 16 17 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 18 C -0.11 -2.12 5.85 31.61 0.19 -1.93 16 19 C -0.12 -1.83 6.39 31.32 0.20 -1.63 16 20 C -0.07 -1.37 7.34 72.41 0.53 -0.84 16 21 S -0.35 -11.52 22.15 -56.49 -1.25 -12.77 16 22 O -0.39 -17.20 10.48 -126.22 -1.32 -18.53 16 23 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 24 H 0.05 2.22 7.20 -2.39 -0.02 2.20 16 25 H 0.03 1.39 7.57 -2.38 -0.02 1.37 16 26 H 0.09 2.47 8.04 -2.39 -0.02 2.45 16 27 H 0.13 3.28 8.14 -2.39 -0.02 3.26 16 28 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.70 7.24 -2.38 -0.02 1.69 16 30 H 0.11 1.11 8.14 -2.38 -0.02 1.10 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -75.61 281.00 2.14 -73.46 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 1.02 Total: 10.93 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: 2.77 Total: -24.57 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.30 Total: -62.08 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -2.58 Total: -31.25 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 16 Polarization: -11.52 SS G_CDS: -1.25 Total: -12.77 kcal Total: -75.61 2.14 -73.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260075714.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.958 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds