Wall clock time and date at job start Mon Mar 30 2020 04:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35037 * 1 3 3 C 1.40072 * 119.99642 * 2 1 4 4 H 1.08003 * 120.00370 * 153.38498 * 3 2 1 5 5 C 1.40312 * 119.99943 * 333.37647 * 3 2 1 6 6 N 1.30693 * 119.99858 * 161.88083 * 5 3 2 7 7 Si 1.86799 * 120.00154 * 341.88317 * 5 3 2 8 8 H 1.48499 * 109.47283 * 89.55325 * 7 5 3 9 9 H 1.48503 * 109.47222 * 209.55565 * 7 5 3 10 10 H 1.48504 * 109.47012 * 329.55461 * 7 5 3 11 11 C 1.50694 * 120.00211 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47108 * 94.99697 * 11 2 1 13 13 H 1.09000 * 109.30017 * 304.73892 * 12 11 2 14 14 C 1.52588 * 109.38077 * 64.47658 * 12 11 2 15 15 C 1.52594 * 110.64144 * 190.14638 * 14 12 11 16 16 C 1.53041 * 109.98165 * 290.01318 * 15 14 12 17 17 S 1.81927 * 109.04016 * 63.63758 * 16 15 14 18 18 O 1.42101 * 108.77514 * 191.42438 * 17 16 15 19 19 O 1.42105 * 108.63457 * 60.02551 * 17 16 15 20 20 C 1.53032 * 109.38742 * 184.99739 * 12 11 2 21 21 H 1.07999 * 120.00277 * 354.13322 * 1 2 3 22 22 H 1.07998 * 119.99609 * 174.14585 * 1 2 3 23 23 H 0.96998 * 119.99322 * 179.97438 * 6 5 3 24 24 H 1.08997 * 109.46977 * 335.00029 * 11 2 1 25 25 H 1.09004 * 109.47352 * 214.99910 * 11 2 1 26 26 H 1.09004 * 109.24154 * 310.44019 * 14 12 11 27 27 H 1.08996 * 109.24907 * 69.88401 * 14 12 11 28 28 H 1.08997 * 109.38222 * 50.16594 * 15 14 12 29 29 H 1.08999 * 109.38924 * 169.85742 * 15 14 12 30 30 H 1.09001 * 109.54594 * 183.50205 * 16 15 14 31 31 H 1.09001 * 109.54939 * 303.69205 * 16 15 14 32 32 H 1.09006 * 109.55384 * 296.05594 * 20 12 11 33 33 H 1.09000 * 109.54810 * 56.24372 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0449 1.2628 0.4190 5 6 1.4606 2.3638 -0.5445 6 7 1.9314 3.5450 -0.2424 7 14 0.0022 2.2075 -1.7012 8 1 -1.2574 2.2241 -0.9148 9 1 0.0041 3.3442 -2.6568 10 1 0.1003 0.9298 -2.4517 11 6 2.1039 -1.3050 0.0006 12 6 2.4677 -1.6845 -1.4363 13 1 1.5625 -1.7079 -2.0430 14 6 3.4320 -0.6477 -2.0052 15 6 3.6189 -0.8531 -3.5056 16 6 4.4107 -2.1373 -3.7630 17 16 3.4462 -3.5592 -3.1649 18 8 4.2816 -4.7087 -3.1593 19 8 2.2116 -3.5982 -3.8674 20 6 3.1218 -3.0680 -1.4462 21 1 -0.5400 0.9304 0.0956 22 1 -0.5399 -0.9305 -0.0954 23 1 1.5236 4.3403 -0.6192 24 1 1.4790 -2.0852 0.4352 25 1 3.0146 -1.1985 0.5900 26 1 3.0325 0.3506 -1.8263 27 1 4.3968 -0.7429 -1.5072 28 1 2.6428 -0.9278 -3.9849 29 1 4.1610 -0.0043 -3.9223 30 1 4.5937 -2.2448 -4.8321 31 1 5.3620 -2.0917 -3.2328 32 1 4.0609 -3.0315 -0.8938 33 1 2.4525 -3.7912 -0.9803 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260165303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:11 Heat of formation + Delta-G solvation = -76.976649 kcal Electronic energy + Delta-G solvation = -16443.335484 eV Core-core repulsion = 13788.947242 eV Total energy + Delta-G solvation = -2654.388242 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.96682 -36.79774 -35.92605 -34.68729 -32.78137 -31.15706 -27.42636 -26.33385 -24.76446 -22.29113 -20.52799 -18.91771 -18.67875 -16.58598 -16.36293 -15.71548 -15.51280 -15.17599 -14.75931 -14.38608 -13.44967 -13.17608 -12.95814 -12.77761 -12.70748 -12.12242 -11.97941 -11.91938 -11.65605 -11.21894 -11.15206 -10.93549 -10.78732 -10.51731 -10.30755 -10.02716 -9.86544 -9.72228 -9.43363 -8.97843 -7.60134 -6.77605 -4.40126 0.14137 2.74662 3.18409 3.31012 3.39610 3.68128 3.72950 4.05896 4.17892 4.69021 4.71340 4.84767 4.94612 5.12540 5.25856 5.42315 5.52760 5.76109 5.80319 5.94794 6.08743 6.29164 6.38840 6.47161 6.60678 6.80595 6.98069 7.21568 7.36453 7.77081 8.09588 8.62320 8.81645 9.08834 10.24608 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.035720 B = 0.007570 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.680495 B = 3698.116079 C = 3817.294868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.435 4.435 2 C 0.040 3.960 3 C -0.457 4.457 4 H 0.080 0.920 5 C 0.085 3.915 6 N -0.824 5.824 7 Si 0.926 3.074 8 H -0.278 1.278 9 H -0.308 1.308 10 H -0.248 1.248 11 C -0.067 4.067 12 C -0.065 4.065 13 H 0.088 0.912 14 C -0.150 4.150 15 C -0.111 4.111 16 C -0.597 4.597 17 S 2.407 3.593 18 O -0.956 6.956 19 O -0.941 6.941 20 C -0.592 4.592 21 H 0.077 0.923 22 H 0.060 0.940 23 H 0.281 0.719 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.124 0.876 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.184 -8.224 -5.520 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.476 4.476 2 C 0.038 3.962 3 C -0.486 4.486 4 H 0.098 0.902 5 C -0.132 4.132 6 N -0.450 5.450 7 Si 0.755 3.245 8 H -0.205 1.205 9 H -0.237 1.237 10 H -0.172 1.172 11 C -0.105 4.105 12 C -0.084 4.084 13 H 0.106 0.894 14 C -0.187 4.187 15 C -0.149 4.149 16 C -0.727 4.727 17 S 2.591 3.409 18 O -0.953 6.953 19 O -0.938 6.938 20 C -0.723 4.723 21 H 0.095 0.905 22 H 0.079 0.921 23 H 0.091 0.909 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.143 0.857 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 5.012 -8.774 -5.998 11.750 hybrid contribution -0.341 0.728 -0.008 0.804 sum 4.671 -8.045 -6.006 11.073 Atomic orbital electron populations 1.23207 0.94782 0.98260 1.31316 1.18645 0.92954 0.92212 0.92427 1.19129 1.02884 0.91490 1.35126 0.90212 1.26231 0.96631 0.94372 0.96004 1.69660 1.39306 0.99007 1.36988 0.86039 0.81058 0.77649 0.79746 1.20514 1.23720 1.17157 1.20589 0.99589 0.96893 0.93441 1.20803 0.98570 0.88771 1.00261 0.89388 1.22064 0.99831 1.04196 0.92586 1.21351 1.00118 0.94751 0.98676 1.30214 1.13618 1.16906 1.11957 1.08216 0.76397 0.77025 0.79246 1.93560 1.69161 1.45804 1.86810 1.93577 1.42549 1.86669 1.70998 1.30318 1.10882 1.08229 1.22835 0.90507 0.92112 0.90927 0.92792 0.92074 0.85750 0.91454 0.90063 0.89768 0.85548 0.85191 0.85101 0.85141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 -10.65 11.39 29.59 0.34 -10.31 16 2 C 0.04 0.93 4.30 -105.07 -0.45 0.48 16 3 C -0.46 -11.62 7.21 -38.11 -0.27 -11.90 16 4 H 0.08 2.10 8.06 -52.48 -0.42 1.68 16 5 C 0.08 2.20 5.39 -17.26 -0.09 2.11 16 6 N -0.82 -22.07 13.92 55.57 0.77 -21.30 16 7 Si 0.93 21.82 24.53 -169.99 -4.17 17.65 16 8 H -0.28 -6.72 6.49 56.52 0.37 -6.35 16 9 H -0.31 -7.05 7.11 56.52 0.40 -6.65 16 10 H -0.25 -5.75 7.01 56.52 0.40 -5.35 16 11 C -0.07 -1.24 4.85 -27.88 -0.14 -1.38 16 12 C -0.06 -1.04 2.01 -90.81 -0.18 -1.23 16 13 H 0.09 1.52 8.02 -51.93 -0.42 1.11 16 14 C -0.15 -2.32 4.75 -27.15 -0.13 -2.45 16 15 C -0.11 -1.44 5.73 -26.92 -0.15 -1.59 16 16 C -0.60 -6.35 6.36 37.18 0.24 -6.11 16 17 S 2.41 31.02 5.32 -107.50 -0.57 30.45 16 18 O -0.96 -14.63 18.11 -57.81 -1.05 -15.68 16 19 O -0.94 -15.53 17.96 -57.81 -1.04 -16.56 16 20 C -0.59 -7.34 5.61 37.17 0.21 -7.13 16 21 H 0.08 1.99 4.48 -52.49 -0.24 1.76 16 22 H 0.06 1.39 8.06 -52.49 -0.42 0.97 16 23 H 0.28 6.94 8.29 -40.82 -0.34 6.60 16 24 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 25 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 26 H 0.12 2.36 5.31 -51.93 -0.28 2.09 16 27 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 28 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 29 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.13 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.13 1.31 8.14 -51.92 -0.42 0.88 16 33 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 273.25 15.07 4.12 4.12 Total: -1.00 -31.45 273.25 -7.31 -38.76 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -4.74 Total: 2.08 kcal Atomic # 6 Polarization: -38.87 SS G_CDS: -0.64 Total: -39.51 kcal Atomic # 7 Polarization: -22.07 SS G_CDS: 0.77 Total: -21.30 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -2.08 Total: -32.24 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.17 Total: 17.65 kcal Atomic # 16 Polarization: 31.02 SS G_CDS: -0.57 Total: 30.45 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.45 -7.31 -38.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.212 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds