Wall clock time and date at job start Mon Mar 30 2020 04:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35037 * 1 3 3 C 1.40072 * 119.99642 * 2 1 4 4 H 1.08003 * 120.00370 * 153.38498 * 3 2 1 5 5 C 1.40312 * 119.99943 * 333.37647 * 3 2 1 6 6 N 1.30693 * 119.99858 * 161.88083 * 5 3 2 7 7 Si 1.86799 * 120.00154 * 341.88317 * 5 3 2 8 8 H 1.48499 * 109.47283 * 89.55325 * 7 5 3 9 9 H 1.48503 * 109.47222 * 209.55565 * 7 5 3 10 10 H 1.48504 * 109.47012 * 329.55461 * 7 5 3 11 11 C 1.50694 * 120.00211 * 179.97438 * 2 1 3 12 12 C 1.53004 * 109.47108 * 94.99697 * 11 2 1 13 13 H 1.09000 * 109.30017 * 304.73892 * 12 11 2 14 14 C 1.52588 * 109.38077 * 64.47658 * 12 11 2 15 15 C 1.52594 * 110.64144 * 190.14638 * 14 12 11 16 16 C 1.53041 * 109.98165 * 290.01318 * 15 14 12 17 17 S 1.81927 * 109.04016 * 63.63758 * 16 15 14 18 18 O 1.42101 * 108.77514 * 191.42438 * 17 16 15 19 19 O 1.42105 * 108.63457 * 60.02551 * 17 16 15 20 20 C 1.53032 * 109.38742 * 184.99739 * 12 11 2 21 21 H 1.07999 * 120.00277 * 354.13322 * 1 2 3 22 22 H 1.07998 * 119.99609 * 174.14585 * 1 2 3 23 23 H 0.96998 * 119.99322 * 179.97438 * 6 5 3 24 24 H 1.08997 * 109.46977 * 335.00029 * 11 2 1 25 25 H 1.09004 * 109.47352 * 214.99910 * 11 2 1 26 26 H 1.09004 * 109.24154 * 310.44019 * 14 12 11 27 27 H 1.08996 * 109.24907 * 69.88401 * 14 12 11 28 28 H 1.08997 * 109.38222 * 50.16594 * 15 14 12 29 29 H 1.08999 * 109.38924 * 169.85742 * 15 14 12 30 30 H 1.09001 * 109.54594 * 183.50205 * 16 15 14 31 31 H 1.09001 * 109.54939 * 303.69205 * 16 15 14 32 32 H 1.09006 * 109.55384 * 296.05594 * 20 12 11 33 33 H 1.09000 * 109.54810 * 56.24372 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0449 1.2628 0.4190 5 6 1.4606 2.3638 -0.5445 6 7 1.9314 3.5450 -0.2424 7 14 0.0022 2.2075 -1.7012 8 1 -1.2574 2.2241 -0.9148 9 1 0.0041 3.3442 -2.6568 10 1 0.1003 0.9298 -2.4517 11 6 2.1039 -1.3050 0.0006 12 6 2.4677 -1.6845 -1.4363 13 1 1.5625 -1.7079 -2.0430 14 6 3.4320 -0.6477 -2.0052 15 6 3.6189 -0.8531 -3.5056 16 6 4.4107 -2.1373 -3.7630 17 16 3.4462 -3.5592 -3.1649 18 8 4.2816 -4.7087 -3.1593 19 8 2.2116 -3.5982 -3.8674 20 6 3.1218 -3.0680 -1.4462 21 1 -0.5400 0.9304 0.0956 22 1 -0.5399 -0.9305 -0.0954 23 1 1.5236 4.3403 -0.6192 24 1 1.4790 -2.0852 0.4352 25 1 3.0146 -1.1985 0.5900 26 1 3.0325 0.3506 -1.8263 27 1 4.3968 -0.7429 -1.5072 28 1 2.6428 -0.9278 -3.9849 29 1 4.1610 -0.0043 -3.9223 30 1 4.5937 -2.2448 -4.8321 31 1 5.3620 -2.0917 -3.2328 32 1 4.0609 -3.0315 -0.8938 33 1 2.4525 -3.7912 -0.9803 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260165303.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:10 Heat of formation + Delta-G solvation = -99.450988 kcal Electronic energy + Delta-G solvation = -16444.310045 eV Core-core repulsion = 13788.947242 eV Total energy + Delta-G solvation = -2655.362803 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.26518 -37.95117 -37.04355 -36.33335 -34.35951 -32.63308 -28.51954 -27.81976 -26.62920 -23.44830 -21.94319 -20.53053 -19.75361 -17.98691 -17.50050 -17.30951 -16.89561 -16.61896 -15.99780 -15.56554 -15.02547 -14.57201 -14.48463 -14.03129 -13.85632 -13.70471 -13.22661 -13.05315 -13.04380 -12.77911 -12.51686 -12.33523 -12.12883 -11.91016 -11.69582 -11.54754 -11.45149 -11.30147 -10.88522 -10.84312 -9.49232 -8.78500 -6.42120 -0.85125 1.25437 1.38075 1.48455 1.73521 1.82972 2.23907 2.74581 3.00600 3.20620 3.69023 3.72289 3.91556 3.92719 4.21296 4.32295 4.50387 4.61757 4.70858 4.75471 4.89252 4.95676 5.04251 5.16809 5.26203 5.32880 5.41367 5.50336 5.68639 5.82534 6.08863 6.65137 6.86912 7.14162 8.27648 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.035720 B = 0.007570 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.680495 B = 3698.116079 C = 3817.294868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.450 4.450 2 C 0.041 3.959 3 C -0.464 4.464 4 H 0.064 0.936 5 C 0.054 3.946 6 N -0.856 5.856 7 Si 0.963 3.037 8 H -0.289 1.289 9 H -0.296 1.296 10 H -0.245 1.245 11 C -0.068 4.068 12 C -0.065 4.065 13 H 0.069 0.931 14 C -0.154 4.154 15 C -0.113 4.113 16 C -0.578 4.578 17 S 2.416 3.584 18 O -0.980 6.980 19 O -0.984 6.984 20 C -0.586 4.586 21 H 0.058 0.942 22 H 0.073 0.927 23 H 0.287 0.713 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.151 0.849 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.481 -9.335 -6.134 12.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.490 4.490 2 C 0.039 3.961 3 C -0.494 4.494 4 H 0.082 0.918 5 C -0.160 4.160 6 N -0.483 5.483 7 Si 0.792 3.208 8 H -0.217 1.217 9 H -0.225 1.225 10 H -0.169 1.169 11 C -0.106 4.106 12 C -0.085 4.085 13 H 0.088 0.912 14 C -0.191 4.191 15 C -0.151 4.151 16 C -0.710 4.710 17 S 2.605 3.395 18 O -0.977 6.977 19 O -0.981 6.981 20 C -0.717 4.717 21 H 0.076 0.924 22 H 0.092 0.908 23 H 0.097 0.903 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.105 0.895 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.169 0.831 31 H 0.180 0.820 32 H 0.180 0.820 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 6.295 -9.909 -6.614 13.475 hybrid contribution -0.719 1.109 0.243 1.344 sum 5.576 -8.801 -6.371 12.212 Atomic orbital electron populations 1.23282 0.95382 0.98039 1.32304 1.18980 0.92928 0.93805 0.90371 1.19213 1.02339 0.92407 1.35423 0.91780 1.26748 0.98100 0.94331 0.96833 1.69686 1.40728 0.99616 1.38269 0.85451 0.78662 0.78045 0.78675 1.21711 1.22457 1.16876 1.20619 0.99722 0.94574 0.95680 1.20693 0.98590 0.91161 0.98019 0.91240 1.22024 1.00520 1.01803 0.94729 1.21323 1.00383 0.96630 0.96806 1.30065 1.13764 1.13240 1.13974 1.07741 0.75535 0.77320 0.78936 1.93531 1.69297 1.47768 1.87124 1.93525 1.44889 1.87580 1.72089 1.30234 1.12472 1.05854 1.23119 0.92414 0.90810 0.90288 0.91591 0.90818 0.89543 0.89128 0.91206 0.88235 0.83124 0.81961 0.81959 0.83907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 -21.85 11.39 67.08 0.76 -21.08 16 2 C 0.04 1.91 4.30 -20.16 -0.09 1.83 16 3 C -0.46 -23.71 7.21 23.22 0.17 -23.55 16 4 H 0.06 3.42 8.06 -2.91 -0.02 3.39 16 5 C 0.05 2.82 5.39 85.37 0.46 3.28 16 6 N -0.86 -46.28 13.92 21.89 0.30 -45.98 16 7 Si 0.96 44.96 24.53 68.60 1.68 46.64 16 8 H -0.29 -13.97 6.49 99.48 0.65 -13.32 16 9 H -0.30 -13.11 7.11 99.48 0.71 -12.40 16 10 H -0.25 -11.21 7.01 99.48 0.70 -10.52 16 11 C -0.07 -2.40 4.85 29.85 0.14 -2.26 16 12 C -0.07 -1.97 2.01 -10.92 -0.02 -1.99 16 13 H 0.07 2.34 8.02 -2.39 -0.02 2.32 16 14 C -0.15 -4.44 4.75 30.32 0.14 -4.30 16 15 C -0.11 -2.64 5.73 30.47 0.17 -2.46 16 16 C -0.58 -10.00 6.36 72.00 0.46 -9.54 16 17 S 2.42 56.24 5.32 -56.49 -0.30 55.94 16 18 O -0.98 -27.51 18.11 -127.40 -2.31 -29.82 16 19 O -0.98 -31.38 17.96 -127.40 -2.29 -33.67 16 20 C -0.59 -12.70 5.61 71.99 0.40 -12.29 16 21 H 0.06 3.01 4.48 -2.91 -0.01 3.00 16 22 H 0.07 3.33 8.06 -2.91 -0.02 3.30 16 23 H 0.29 14.31 8.29 -92.71 -0.77 13.54 16 24 H 0.07 2.16 8.04 -2.39 -0.02 2.14 16 25 H 0.07 2.42 8.12 -2.38 -0.02 2.40 16 26 H 0.09 3.23 5.31 -2.39 -0.01 3.22 16 27 H 0.09 2.14 8.09 -2.39 -0.02 2.12 16 28 H 0.07 1.79 8.02 -2.39 -0.02 1.77 16 29 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.16 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.16 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.14 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -67.89 273.25 0.72 -67.17 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 1.02 Total: 12.07 kcal Atomic # 6 Polarization: -74.97 SS G_CDS: 2.61 Total: -72.36 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.30 Total: -45.98 kcal Atomic # 8 Polarization: -58.89 SS G_CDS: -4.59 Total: -63.49 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.68 Total: 46.64 kcal Atomic # 16 Polarization: 56.24 SS G_CDS: -0.30 Total: 55.94 kcal Total: -67.89 0.72 -67.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260165303.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.281 kcal (2) G-P(sol) polarization free energy of solvation -67.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds