Wall clock time and date at job start Mon Mar 30 2020 04:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30687 * 1 3 3 Si 1.86801 * 119.99810 * 2 1 4 4 H 1.48500 * 109.47407 * 240.00258 * 3 2 1 5 5 H 1.48501 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46982 * 120.00654 * 3 2 1 7 7 C 1.40303 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99909 * 179.97438 * 7 2 1 9 9 C 1.40076 * 120.00089 * 359.97438 * 7 2 1 10 10 C 1.35034 * 120.00227 * 188.80398 * 9 7 2 11 11 C 1.50707 * 119.99591 * 6.40709 * 10 9 7 12 12 C 1.52996 * 109.47074 * 126.21676 * 11 10 9 13 13 C 1.52593 * 109.24209 * 296.14986 * 12 11 10 14 14 C 1.53037 * 109.98710 * 169.71298 * 13 12 11 15 15 S 1.81668 * 108.99494 * 63.64907 * 14 13 12 16 16 O 1.42103 * 108.66323 * 191.37160 * 15 14 13 17 17 O 1.42100 * 108.74960 * 60.06175 * 15 14 13 18 18 C 1.81668 * 101.30966 * 305.69911 * 15 14 13 19 19 C 1.52582 * 109.24302 * 174.99526 * 12 11 10 20 20 H 0.96996 * 120.00122 * 359.97438 * 1 2 3 21 21 H 1.08002 * 119.99921 * 8.80973 * 9 7 2 22 22 H 1.07991 * 120.00092 * 186.40329 * 10 9 7 23 23 H 1.09006 * 109.46769 * 246.21178 * 11 10 9 24 24 H 1.08997 * 109.47370 * 6.20845 * 11 10 9 25 25 H 1.09004 * 109.24279 * 55.55019 * 12 11 10 26 26 H 1.08997 * 109.38237 * 289.87702 * 13 12 11 27 27 H 1.09005 * 109.38116 * 49.55639 * 13 12 11 28 28 H 1.08995 * 109.54932 * 303.79356 * 14 13 12 29 29 H 1.08994 * 109.62832 * 183.55009 * 14 13 12 30 30 H 1.08993 * 109.55162 * 294.44460 * 18 15 14 31 31 H 1.09002 * 109.62754 * 174.20383 * 18 15 14 32 32 H 1.08995 * 109.38780 * 310.44552 * 19 12 11 33 33 H 1.09006 * 109.38751 * 70.23418 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2408 1.6178 0.0000 4 1 3.0945 1.6966 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0947 1.6964 1.2125 7 6 2.0084 -1.2150 -0.0005 8 1 3.0885 -1.2150 -0.0010 9 6 1.3081 -2.4282 -0.0005 10 6 1.9714 -3.5907 0.1779 11 6 3.4389 -3.5760 0.5204 12 6 3.6752 -4.4001 1.7876 13 6 2.9527 -3.7404 2.9586 14 6 2.9605 -4.6740 4.1711 15 16 4.6770 -4.9339 4.7063 16 8 4.7031 -5.9953 5.6507 17 8 5.2414 -3.6777 5.0562 18 6 5.4477 -5.5084 3.1648 19 6 5.1741 -4.4856 2.0597 20 1 -0.4850 0.8400 0.0004 21 1 0.2376 -2.4337 -0.1434 22 1 1.4502 -4.5310 0.0753 23 1 4.0087 -4.0054 -0.3037 24 1 3.7623 -2.5489 0.6893 25 1 3.2787 -5.4049 1.6418 26 1 3.4565 -2.8088 3.2160 27 1 1.9226 -3.5260 2.6736 28 1 2.5148 -5.6305 3.8978 29 1 2.3893 -4.2243 4.9832 30 1 5.0244 -6.4723 2.8825 31 1 6.5232 -5.6106 3.3091 32 1 5.6903 -4.7899 1.1492 33 1 5.5411 -3.5086 2.3743 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260201558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:15 Heat of formation + Delta-G solvation = -107.498194 kcal Electronic energy + Delta-G solvation = -15925.349838 eV Core-core repulsion = 13269.638082 eV Total energy + Delta-G solvation = -2655.711756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.03774 -37.89431 -37.03578 -36.17801 -33.75846 -32.63639 -30.24404 -27.07118 -24.84075 -24.37633 -21.24346 -20.64154 -19.71630 -18.16854 -17.76052 -17.21753 -16.73368 -16.51208 -15.56778 -15.42109 -15.06877 -14.60377 -14.39358 -13.97297 -13.82348 -13.23323 -13.12276 -13.04356 -13.03461 -12.85200 -12.58320 -12.41939 -12.12015 -12.03683 -11.68173 -11.45989 -11.30111 -11.19880 -10.82727 -10.71990 -9.52658 -8.64070 -6.23726 -0.83989 1.28731 1.38621 1.49310 1.80789 2.00926 2.23103 2.76124 3.05007 3.43633 3.73285 3.78676 3.89514 3.92607 4.20117 4.37881 4.51554 4.65307 4.81187 4.89213 4.99048 5.09639 5.15745 5.26527 5.34083 5.37218 5.42658 5.56087 5.78393 6.00350 6.44208 6.71697 7.15339 7.27569 8.41937 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.033207 B = 0.005861 C = 0.005599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.002331 B = 4776.391586 C = 4999.867270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.025 3.975 3 Si 0.976 3.024 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.260 1.260 7 C -0.488 4.488 8 H 0.080 0.920 9 C 0.017 3.983 10 C -0.400 4.400 11 C -0.037 4.037 12 C -0.095 4.095 13 C -0.104 4.104 14 C -0.589 4.589 15 S 2.419 3.581 16 O -0.984 6.984 17 O -0.983 6.983 18 C -0.578 4.578 19 C -0.109 4.109 20 H 0.286 0.714 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.044 0.956 24 H 0.049 0.951 25 H 0.088 0.912 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.155 0.845 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.689 -7.940 5.037 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.187 4.187 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.184 1.184 7 C -0.518 4.518 8 H 0.098 0.902 9 C -0.003 4.003 10 C -0.422 4.422 11 C -0.074 4.074 12 C -0.114 4.114 13 C -0.143 4.143 14 C -0.720 4.720 15 S 2.607 3.393 16 O -0.981 6.981 17 O -0.980 6.980 18 C -0.711 4.711 19 C -0.148 4.148 20 H 0.096 0.904 21 H 0.064 0.936 22 H 0.085 0.915 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.107 0.893 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.173 0.827 29 H 0.155 0.845 30 H 0.179 0.821 31 H 0.172 0.828 32 H 0.121 0.879 33 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.856 -7.656 5.918 13.118 hybrid contribution -0.755 0.694 -0.785 1.292 sum 8.101 -6.962 5.133 11.851 Atomic orbital electron populations 1.69638 1.09180 1.30675 1.39460 1.26980 0.95531 1.05083 0.91083 0.85338 0.78775 0.75992 0.80200 1.18156 1.19565 1.18408 1.19855 0.95032 0.91390 1.45545 0.90172 1.19883 0.95037 0.93845 0.91550 1.22195 0.96987 0.94368 1.28622 1.20043 0.94061 0.98721 0.94617 1.21283 0.94164 1.00724 0.95210 1.21248 1.03810 0.97199 0.91996 1.30125 1.22973 1.10532 1.08329 1.07709 0.79222 0.74177 0.78235 1.93521 1.86958 1.57331 1.60283 1.93520 1.77093 1.44183 1.83235 1.30021 1.14603 1.10638 1.15788 1.21420 0.96244 0.98085 0.99024 0.90365 0.93616 0.91537 0.93799 0.93268 0.89322 0.91662 0.90856 0.82673 0.84540 0.82118 0.82762 0.87890 0.90720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.49 12.88 21.89 0.28 -46.21 16 2 C 0.03 1.31 5.50 85.37 0.47 1.78 16 3 Si 0.98 39.06 29.56 68.60 2.03 41.09 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 7 C -0.49 -25.97 8.48 23.22 0.20 -25.78 16 8 H 0.08 4.09 5.77 -2.91 -0.02 4.07 16 9 C 0.02 0.90 9.37 21.98 0.21 1.11 16 10 C -0.40 -18.35 8.43 24.95 0.21 -18.14 16 11 C -0.04 -1.41 4.86 29.85 0.15 -1.27 16 12 C -0.10 -2.71 1.94 -11.07 -0.02 -2.73 16 13 C -0.10 -3.19 4.96 30.47 0.15 -3.04 16 14 C -0.59 -13.37 6.35 71.99 0.46 -12.92 16 15 S 2.42 56.43 5.30 -56.49 -0.30 56.13 16 16 O -0.98 -28.01 18.10 -127.38 -2.31 -30.32 16 17 O -0.98 -31.15 17.95 -127.38 -2.29 -33.44 16 18 C -0.58 -9.58 6.35 72.00 0.46 -9.13 16 19 C -0.11 -2.40 5.02 30.47 0.15 -2.25 16 20 H 0.29 14.07 8.29 -92.71 -0.77 13.31 16 21 H 0.05 2.65 7.46 -2.91 -0.02 2.63 16 22 H 0.07 2.95 8.06 -2.92 -0.02 2.93 16 23 H 0.04 1.53 8.09 -2.38 -0.02 1.51 16 24 H 0.05 2.04 5.51 -2.39 -0.01 2.02 16 25 H 0.09 2.18 8.09 -2.39 -0.02 2.16 16 26 H 0.06 2.13 8.02 -2.39 -0.02 2.12 16 27 H 0.07 2.69 7.00 -2.38 -0.02 2.68 16 28 H 0.16 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.16 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.15 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.10 1.94 8.06 -2.39 -0.02 1.92 16 33 H 0.07 1.78 8.01 -2.38 -0.02 1.76 16 Total: -1.00 -68.09 281.32 0.93 -67.16 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 1.09 Total: 17.95 kcal Atomic # 6 Polarization: -74.79 SS G_CDS: 2.42 Total: -72.36 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: 0.28 Total: -46.21 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -4.59 Total: -63.76 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: 56.43 SS G_CDS: -0.30 Total: 56.13 kcal Total: -68.09 0.93 -67.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260201558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.335 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds