Wall clock time and date at job start Mon Mar 30 2020 04:12:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99915 * 2 1 4 4 H 1.48499 * 109.47107 * 269.99787 * 3 2 1 5 5 H 1.48494 * 109.47366 * 29.99827 * 3 2 1 6 6 H 1.48502 * 109.46863 * 150.00274 * 3 2 1 7 7 C 1.37879 * 120.00024 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00058 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47107 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.86914 * 308.81293 * 10 9 7 12 12 C 1.54915 * 110.97990 * 184.99923 * 10 9 7 13 13 O 1.44197 * 103.08095 * 206.29412 * 12 10 9 14 14 C 1.43371 * 107.28303 * 21.43831 * 13 12 10 15 15 H 1.09006 * 109.62970 * 240.93381 * 14 13 12 16 16 C 1.52999 * 109.63009 * 120.55153 * 14 13 12 17 17 H 1.09004 * 109.99051 * 187.35916 * 16 14 13 18 18 C 1.53854 * 109.97818 * 66.08841 * 16 14 13 19 19 C 1.54272 * 108.92702 * 193.38405 * 18 16 14 20 20 S 1.83100 * 104.65178 * 27.95286 * 19 18 16 21 21 C 1.55136 * 109.97230 * 308.62054 * 16 14 13 22 22 O 1.43744 * 108.67425 * 0.74186 * 14 13 12 23 23 H 0.97000 * 119.99974 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.47326 * 59.99944 * 9 7 2 25 25 H 1.08995 * 109.47235 * 300.00182 * 9 7 2 26 26 H 1.09001 * 110.69382 * 87.89561 * 12 10 9 27 27 H 1.08996 * 110.84583 * 324.76504 * 12 10 9 28 28 H 1.08999 * 109.61104 * 73.46458 * 18 16 14 29 29 H 1.08998 * 109.61111 * 313.30448 * 18 16 14 30 30 H 1.09001 * 110.40303 * 269.16331 * 19 18 16 31 31 H 1.08997 * 110.40494 * 146.74843 * 19 18 16 32 32 H 1.09006 * 110.85800 * 43.30446 * 21 16 14 33 33 H 1.08997 * 110.85873 * 279.65771 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 1 2.9828 -3.5423 -0.7941 12 6 1.5104 -5.0200 -0.1266 13 8 2.4198 -5.9431 0.5060 14 6 3.2714 -5.1781 1.3691 15 1 4.3084 -5.2879 1.0516 16 6 3.1200 -5.6713 2.8095 17 1 3.6626 -5.0129 3.4878 18 6 3.6551 -7.1086 2.9319 19 6 3.1933 -7.7015 4.2792 20 16 1.6293 -6.8278 4.6578 21 6 1.6192 -5.7140 3.2000 22 8 2.8856 -3.7957 1.2889 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 1.3623 -5.2820 -1.1742 27 1 0.5572 -4.9956 0.4013 28 1 4.7443 -7.0982 2.8910 29 1 3.2667 -7.7145 2.1133 30 1 3.9346 -7.5065 5.0542 31 1 3.0163 -8.7726 4.1823 32 1 1.0201 -6.1363 2.3931 33 1 1.2607 -4.7214 3.4724 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260238640.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:45 Heat of formation + Delta-G solvation = -105.871081 kcal Electronic energy + Delta-G solvation = -16100.253702 eV Core-core repulsion = 13444.612503 eV Total energy + Delta-G solvation = -2655.641199 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.15718 -36.14454 -34.62290 -33.22515 -31.02908 -29.51971 -27.15424 -25.63259 -23.29814 -23.00045 -20.91956 -19.85453 -17.41700 -16.54443 -16.27179 -16.14684 -15.43328 -14.72622 -14.58565 -14.25037 -13.91942 -13.32821 -12.82855 -12.51660 -12.35901 -12.21579 -11.90085 -11.67144 -11.58862 -11.24730 -11.20713 -10.86461 -10.64672 -10.51844 -10.09971 -9.79880 -9.49819 -9.20764 -9.10076 -8.44909 -7.65711 -6.07516 -4.09476 1.86066 2.40917 3.29415 3.36085 3.40415 3.83057 4.16028 4.41144 4.57454 4.75779 4.83428 5.10692 5.14837 5.23841 5.30216 5.37875 5.47296 5.54232 5.58287 5.66937 5.73814 5.78343 5.98704 6.02883 6.20582 6.31572 6.63581 7.29033 7.46745 7.70854 7.88695 8.27584 8.94153 9.54429 11.03906 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.035571 B = 0.005528 C = 0.005325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.961593 B = 5063.949243 C = 5257.114792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.058 0.942 9 C 0.028 3.972 10 C 0.060 3.940 11 H 0.073 0.927 12 C 0.019 3.981 13 O -0.392 6.392 14 C 0.239 3.761 15 H 0.079 0.921 16 C -0.106 4.106 17 H 0.100 0.900 18 C -0.121 4.121 19 C -0.069 4.069 20 S -0.310 6.310 21 C -0.051 4.051 22 O -0.358 6.358 23 H 0.262 0.738 24 H 0.036 0.964 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.947 -13.683 3.834 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.076 0.924 9 C -0.009 4.009 10 C 0.004 3.996 11 H 0.091 0.909 12 C -0.057 4.057 13 O -0.313 6.313 14 C 0.141 3.859 15 H 0.096 0.904 16 C -0.127 4.127 17 H 0.118 0.882 18 C -0.160 4.160 19 C -0.217 4.217 20 S -0.084 6.084 21 C -0.199 4.199 22 O -0.278 6.278 23 H 0.072 0.928 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.059 -13.754 4.904 15.453 hybrid contribution 1.194 1.118 -1.003 1.919 sum 6.252 -12.636 3.901 14.628 Atomic orbital electron populations 1.69944 1.06054 1.26860 1.50644 1.24991 0.94864 0.99352 0.95150 0.86539 0.79904 0.83198 0.78083 1.20639 1.21167 1.19803 1.21089 0.93126 0.90426 1.50800 0.92392 1.19171 0.92873 0.90306 0.98509 1.24276 0.95090 0.95989 0.84270 0.90879 1.24412 0.93791 0.88989 0.98480 1.88758 1.48973 1.33192 1.60419 1.23768 0.93891 0.79189 0.89036 0.90399 1.22677 0.95447 0.97173 0.97378 0.88218 1.22230 1.01888 0.95188 0.96663 1.23915 0.96002 1.01921 0.99831 1.87521 1.33740 1.49201 1.37929 1.24239 0.98621 1.01054 0.95951 1.89332 1.78085 1.22816 1.37583 0.92848 0.94569 0.95175 0.88851 0.90798 0.89936 0.89752 0.89130 0.88823 0.88476 0.87356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.27 9.07 -34.44 -0.31 -14.59 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.70 4.75 -27.89 -0.13 0.56 16 10 C 0.06 1.21 3.41 -25.72 -0.09 1.12 16 11 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 12 C 0.02 0.32 7.33 38.17 0.28 0.60 16 13 O -0.39 -6.21 9.58 -59.05 -0.57 -6.78 16 14 C 0.24 3.74 3.66 37.16 0.14 3.87 16 15 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 16 C -0.11 -1.46 2.69 -89.05 -0.24 -1.69 16 17 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 18 C -0.12 -1.32 5.72 -25.62 -0.15 -1.47 16 19 C -0.07 -0.72 7.34 37.82 0.28 -0.44 16 20 S -0.31 -4.33 23.26 -107.50 -2.50 -6.83 16 21 C -0.05 -0.75 6.54 38.29 0.25 -0.50 16 22 O -0.36 -7.15 10.87 -59.05 -0.64 -7.79 16 23 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.22 7.85 -51.93 -0.41 0.81 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.96 7.63 -51.93 -0.40 0.57 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.10 1.48 6.79 -51.93 -0.35 1.13 16 33 H 0.11 1.75 8.14 -51.93 -0.42 1.33 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -29.63 283.56 -8.72 -38.35 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.93 Total: -1.13 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -0.07 Total: -11.01 kcal Atomic # 7 Polarization: -26.28 SS G_CDS: 0.74 Total: -25.54 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: -1.21 Total: -14.57 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -4.33 SS G_CDS: -2.50 Total: -6.83 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.63 -8.72 -38.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260238640.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.522 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds