Wall clock time and date at job start Mon Mar 30 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48503 * 109.47303 * 270.00160 * 3 2 1 5 5 H 1.48502 * 109.47146 * 30.00233 * 3 2 1 6 6 H 1.48506 * 109.47176 * 149.99912 * 3 2 1 7 7 C 1.37875 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47217 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46842 * 55.00172 * 10 9 7 12 12 C 1.53003 * 109.47173 * 295.00158 * 10 9 7 13 13 C 1.52996 * 117.49634 * 173.94901 * 12 10 9 14 14 C 1.52999 * 60.03449 * 252.50080 * 13 12 10 15 15 C 1.52993 * 109.47083 * 175.00114 * 10 9 7 16 16 C 1.53047 * 113.15408 * 286.39911 * 15 10 9 17 17 S 1.81491 * 89.86429 * 211.86885 * 16 15 10 18 18 O 1.42099 * 112.71865 * 280.42826 * 17 16 15 19 19 O 1.42104 * 112.86014 * 136.68230 * 17 16 15 20 20 C 1.53044 * 113.15157 * 185.96904 * 15 10 9 21 21 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46863 * 60.00434 * 9 7 2 23 23 H 1.09000 * 109.47171 * 300.00259 * 9 7 2 24 24 H 1.08996 * 115.55230 * 319.62268 * 12 10 9 25 25 H 1.09004 * 117.50431 * 0.02562 * 13 12 10 26 26 H 1.09003 * 117.50204 * 145.00071 * 13 12 10 27 27 H 1.09003 * 117.49698 * 107.50064 * 14 13 12 28 28 H 1.08997 * 117.50104 * 252.52207 * 14 13 12 29 29 H 1.09000 * 112.49912 * 56.18515 * 15 10 9 30 30 H 1.09003 * 113.14587 * 327.11143 * 16 15 10 31 31 H 1.09005 * 113.14855 * 96.59265 * 16 15 10 32 32 H 1.08994 * 113.15244 * 263.40347 * 20 15 10 33 33 H 1.08999 * 113.14706 * 32.85165 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 1 2.9302 -3.5554 0.8395 12 6 3.0393 -3.6529 -1.3098 13 6 4.1871 -4.6552 -1.4465 14 6 4.4902 -3.1681 -1.2530 15 6 1.4849 -4.9835 0.1239 16 6 0.9324 -5.2285 1.5300 17 16 1.1518 -7.0154 1.3001 18 8 0.1115 -7.6014 0.5297 19 8 1.7057 -7.6549 2.4418 20 6 2.4062 -6.1958 0.2772 21 1 -0.4850 0.8400 -0.0004 22 1 0.6243 -2.5567 -0.8903 23 1 0.6249 -2.5571 0.8896 24 1 2.4653 -3.4196 -2.2065 25 1 4.3765 -5.3215 -0.6049 26 1 4.3682 -5.0815 -2.4332 27 1 4.8791 -2.8557 -0.2838 28 1 4.8703 -2.6159 -2.1124 29 1 0.7366 -5.1101 -0.6586 30 1 1.5649 -4.8168 2.3165 31 1 -0.1118 -4.9348 1.6373 32 1 2.5955 -6.7119 -0.6640 33 1 3.3235 -5.9708 0.8213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260356818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:54 Heat of formation + Delta-G solvation = -37.695649 kcal Electronic energy + Delta-G solvation = -16076.714848 eV Core-core repulsion = 13424.029958 eV Total energy + Delta-G solvation = -2652.684890 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.61641 -37.16131 -35.97302 -35.29583 -33.11421 -30.30163 -26.52899 -25.64417 -21.92545 -21.82284 -21.10436 -19.42907 -18.62324 -16.51650 -16.22768 -15.98348 -15.83425 -14.94005 -14.76750 -14.30828 -13.60253 -13.07151 -12.98926 -12.28902 -12.14956 -12.11423 -11.80267 -11.72654 -11.29340 -11.10083 -10.96683 -10.78741 -10.57286 -10.48999 -10.14596 -10.00323 -9.70994 -9.52923 -9.01069 -8.88600 -8.36914 -6.01694 -4.02510 0.31005 2.12524 3.29622 3.36692 3.39041 3.81299 4.12125 4.38471 4.43473 4.56146 5.01343 5.08937 5.31264 5.34132 5.37401 5.49343 5.55036 5.67671 5.90437 6.01158 6.02630 6.17981 6.24110 6.43425 6.51000 6.60426 6.95087 7.00190 7.63846 7.74556 7.97595 8.40540 9.04070 9.61260 11.09745 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.006611 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.389518 B = 4234.272544 C = 4818.284275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.027 4.027 11 H 0.064 0.936 12 C -0.111 4.111 13 C -0.205 4.205 14 C -0.171 4.171 15 C -0.057 4.057 16 C -0.581 4.581 17 S 2.384 3.616 18 O -0.925 6.925 19 O -0.942 6.942 20 C -0.587 4.587 21 H 0.259 0.741 22 H 0.018 0.982 23 H 0.021 0.979 24 H 0.099 0.901 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.141 0.859 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -11.311 0.170 12.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.047 4.047 11 H 0.083 0.917 12 C -0.129 4.129 13 C -0.242 4.242 14 C -0.208 4.208 15 C -0.078 4.078 16 C -0.711 4.711 17 S 2.570 3.430 18 O -0.922 6.922 19 O -0.939 6.939 20 C -0.717 4.717 21 H 0.069 0.931 22 H 0.036 0.964 23 H 0.039 0.961 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.102 0.898 29 H 0.126 0.874 30 H 0.160 0.840 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.202 -12.326 0.531 13.033 hybrid contribution 0.843 2.158 -0.428 2.356 sum 5.045 -10.168 0.103 11.351 Atomic orbital electron populations 1.69954 1.06002 1.26500 1.51213 1.25001 0.94774 0.99120 0.95595 0.86662 0.79867 0.83819 0.78038 1.20791 1.21372 1.19961 1.21233 0.93196 0.90659 1.49883 0.92295 1.19145 0.93419 0.90806 0.97513 1.20720 0.96957 0.92295 0.94770 0.91714 1.22127 0.89883 1.01179 0.99745 1.23164 1.06293 0.92910 1.01878 1.22829 0.99914 0.95667 1.02430 1.21538 0.96157 0.95997 0.94065 1.30936 1.10485 1.24167 1.05468 1.09094 0.78674 0.78260 0.77019 1.93680 1.52807 1.75575 1.70161 1.93596 1.77588 1.74908 1.47769 1.31071 1.15357 1.09843 1.15386 0.93096 0.96395 0.96113 0.88304 0.88913 0.90011 0.89218 0.89758 0.87351 0.84037 0.85762 0.85982 0.84168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.10 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.49 8.61 -34.44 -0.30 -13.78 16 8 H 0.06 1.51 6.94 -52.48 -0.36 1.15 16 9 C 0.03 0.66 4.41 -27.88 -0.12 0.54 16 10 C -0.03 -0.49 1.64 -90.62 -0.15 -0.64 16 11 H 0.06 1.16 7.92 -51.93 -0.41 0.75 16 12 C -0.11 -1.88 4.48 -90.58 -0.41 -2.28 16 13 C -0.21 -2.80 9.00 -26.73 -0.24 -3.04 16 14 C -0.17 -2.73 9.48 -26.69 -0.25 -2.98 16 15 C -0.06 -0.81 2.79 -90.58 -0.25 -1.06 16 16 C -0.58 -7.24 7.06 37.18 0.26 -6.97 16 17 S 2.38 26.93 7.55 -107.50 -0.81 26.12 16 18 O -0.93 -13.30 18.18 -57.31 -1.04 -14.34 16 19 O -0.94 -13.27 18.18 -57.31 -1.04 -14.31 16 20 C -0.59 -6.33 5.27 37.18 0.20 -6.13 16 21 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 22 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.02 0.51 7.76 -51.93 -0.40 0.11 16 24 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 25 H 0.09 1.13 5.69 -51.93 -0.30 0.83 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 28 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 30 H 0.14 1.68 8.09 -51.93 -0.42 1.26 16 31 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.12 1.12 7.85 -51.93 -0.41 0.71 16 33 H 0.14 1.37 7.05 -51.93 -0.37 1.00 16 LS Contribution 282.81 15.07 4.26 4.26 Total: -1.00 -33.36 282.81 -9.04 -42.40 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -4.76 Total: -0.01 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: -1.36 Total: -34.91 kcal Atomic # 7 Polarization: -26.10 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -2.08 Total: -28.65 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 26.93 SS G_CDS: -0.81 Total: 26.12 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.36 -9.04 -42.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.706 kcal (2) G-P(sol) polarization free energy of solvation -33.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds