Wall clock time and date at job start Mon Mar 30 2020 04:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99613 * 2 1 4 4 H 1.48503 * 109.47303 * 270.00160 * 3 2 1 5 5 H 1.48502 * 109.47146 * 30.00233 * 3 2 1 6 6 H 1.48506 * 109.47176 * 149.99912 * 3 2 1 7 7 C 1.37875 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99666 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47217 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.46842 * 55.00172 * 10 9 7 12 12 C 1.53003 * 109.47173 * 295.00158 * 10 9 7 13 13 C 1.52996 * 117.49634 * 173.94901 * 12 10 9 14 14 C 1.52999 * 60.03449 * 252.50080 * 13 12 10 15 15 C 1.52993 * 109.47083 * 175.00114 * 10 9 7 16 16 C 1.53047 * 113.15408 * 286.39911 * 15 10 9 17 17 S 1.81491 * 89.86429 * 211.86885 * 16 15 10 18 18 O 1.42099 * 112.71865 * 280.42826 * 17 16 15 19 19 O 1.42104 * 112.86014 * 136.68230 * 17 16 15 20 20 C 1.53044 * 113.15157 * 185.96904 * 15 10 9 21 21 H 0.96998 * 120.00102 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46863 * 60.00434 * 9 7 2 23 23 H 1.09000 * 109.47171 * 300.00259 * 9 7 2 24 24 H 1.08996 * 115.55230 * 319.62268 * 12 10 9 25 25 H 1.09004 * 117.50431 * 0.02562 * 13 12 10 26 26 H 1.09003 * 117.50204 * 145.00071 * 13 12 10 27 27 H 1.09003 * 117.49698 * 107.50064 * 14 13 12 28 28 H 1.08997 * 117.50104 * 252.52207 * 14 13 12 29 29 H 1.09000 * 112.49912 * 56.18515 * 15 10 9 30 30 H 1.09003 * 113.14587 * 327.11143 * 16 15 10 31 31 H 1.09005 * 113.14855 * 96.59265 * 16 15 10 32 32 H 1.08994 * 113.15244 * 263.40347 * 20 15 10 33 33 H 1.08999 * 113.14706 * 32.85165 * 20 15 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4404 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 1 2.9302 -3.5554 0.8395 12 6 3.0393 -3.6529 -1.3098 13 6 4.1871 -4.6552 -1.4465 14 6 4.4902 -3.1681 -1.2530 15 6 1.4849 -4.9835 0.1239 16 6 0.9324 -5.2285 1.5300 17 16 1.1518 -7.0154 1.3001 18 8 0.1115 -7.6014 0.5297 19 8 1.7057 -7.6549 2.4418 20 6 2.4062 -6.1958 0.2772 21 1 -0.4850 0.8400 -0.0004 22 1 0.6243 -2.5567 -0.8903 23 1 0.6249 -2.5571 0.8896 24 1 2.4653 -3.4196 -2.2065 25 1 4.3765 -5.3215 -0.6049 26 1 4.3682 -5.0815 -2.4332 27 1 4.8791 -2.8557 -0.2838 28 1 4.8703 -2.6159 -2.1124 29 1 0.7366 -5.1101 -0.6586 30 1 1.5649 -4.8168 2.3165 31 1 -0.1118 -4.9348 1.6373 32 1 2.5955 -6.7119 -0.6640 33 1 3.3235 -5.9708 0.8213 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260356818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:54 Heat of formation + Delta-G solvation = -60.532562 kcal Electronic energy + Delta-G solvation = -16077.705131 eV Core-core repulsion = 13424.029958 eV Total energy + Delta-G solvation = -2653.675173 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.86041 -38.23624 -37.05359 -36.41718 -35.09820 -32.01849 -27.54403 -27.39777 -23.69069 -23.00525 -22.28244 -20.73681 -19.62114 -18.37913 -17.30280 -17.03922 -16.99302 -16.60409 -15.91820 -15.86260 -14.85281 -14.53299 -14.12845 -13.87886 -13.40293 -13.25800 -13.21043 -13.12907 -12.81403 -12.69892 -12.31006 -12.18769 -12.12208 -11.94186 -11.52033 -11.29101 -11.16128 -11.02602 -10.61282 -10.43444 -10.31399 -8.13386 -6.19951 -0.66811 1.18413 1.40133 1.40786 1.50724 2.43758 2.85841 3.10471 3.20683 3.25516 3.47730 3.90843 3.99337 4.22802 4.29419 4.34614 4.43109 4.63146 4.75108 4.86280 4.93682 4.99146 5.05628 5.18852 5.27836 5.36213 5.45817 5.50641 5.67647 5.85508 5.94947 6.36084 6.97499 7.47750 8.98419 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.030349 B = 0.006611 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.389518 B = 4234.272544 C = 4818.284275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.003 4.003 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.263 1.263 7 C -0.517 4.517 8 H 0.065 0.935 9 C 0.031 3.969 10 C -0.017 4.017 11 H 0.066 0.934 12 C -0.139 4.139 13 C -0.166 4.166 14 C -0.186 4.186 15 C -0.070 4.070 16 C -0.594 4.594 17 S 2.436 3.564 18 O -0.952 6.952 19 O -0.962 6.962 20 C -0.568 4.568 21 H 0.259 0.741 22 H -0.012 1.012 23 H -0.003 1.003 24 H 0.079 0.921 25 H 0.116 0.884 26 H 0.102 0.898 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.148 0.852 31 H 0.119 0.881 32 H 0.149 0.851 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.922 -12.495 0.080 14.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.200 4.200 3 Si 0.777 3.223 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.187 1.187 7 C -0.555 4.555 8 H 0.083 0.917 9 C -0.006 4.006 10 C -0.037 4.037 11 H 0.084 0.916 12 C -0.158 4.158 13 C -0.203 4.203 14 C -0.224 4.224 15 C -0.091 4.091 16 C -0.723 4.723 17 S 2.621 3.379 18 O -0.950 6.950 19 O -0.959 6.959 20 C -0.699 4.699 21 H 0.067 0.933 22 H 0.006 0.994 23 H 0.015 0.985 24 H 0.097 0.903 25 H 0.134 0.866 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.123 0.877 30 H 0.166 0.834 31 H 0.137 0.863 32 H 0.167 0.833 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 6.334 -13.515 0.450 14.932 hybrid contribution 0.166 2.538 -0.415 2.577 sum 6.500 -10.976 0.035 12.757 Atomic orbital electron populations 1.70091 1.07615 1.27199 1.52937 1.25860 0.95562 1.02840 0.95692 0.85650 0.78882 0.79589 0.78147 1.20337 1.21403 1.18748 1.21693 0.93692 0.91868 1.48278 0.91692 1.19036 0.94001 0.92707 0.94843 1.20449 0.95819 0.91849 0.95583 0.91560 1.21999 0.90444 1.04979 0.98342 1.23278 1.01416 0.91672 1.03917 1.22903 0.98939 0.98159 1.02356 1.21488 0.97028 0.95618 0.94989 1.31087 1.10450 1.25897 1.04856 1.07615 0.77794 0.76519 0.75926 1.93639 1.54544 1.76052 1.70736 1.93566 1.77957 1.75190 1.49156 1.30945 1.14987 1.07272 1.16686 0.93255 0.99357 0.98489 0.90269 0.86554 0.87979 0.89661 0.89680 0.87704 0.83376 0.86270 0.83281 0.82101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.16 13.29 21.45 0.28 -55.87 16 2 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 3 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 6 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.52 -27.70 8.61 25.60 0.22 -27.48 16 8 H 0.06 3.33 6.94 -2.91 -0.02 3.31 16 9 C 0.03 1.52 4.41 29.85 0.13 1.65 16 10 C -0.02 -0.60 1.64 -10.79 -0.02 -0.62 16 11 H 0.07 2.29 7.92 -2.39 -0.02 2.28 16 12 C -0.14 -4.54 4.48 -10.77 -0.05 -4.58 16 13 C -0.17 -3.89 9.00 30.59 0.28 -3.61 16 14 C -0.19 -5.57 9.48 30.62 0.29 -5.28 16 15 C -0.07 -1.91 2.79 -10.77 -0.03 -1.94 16 16 C -0.59 -14.36 7.06 72.00 0.51 -13.85 16 17 S 2.44 50.06 7.55 -56.49 -0.43 49.63 16 18 O -0.95 -25.90 18.18 -127.87 -2.32 -28.23 16 19 O -0.96 -24.87 18.18 -127.87 -2.32 -27.19 16 20 C -0.57 -10.24 5.27 72.00 0.38 -9.86 16 21 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 22 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 16 23 H 0.00 -0.17 7.76 -2.39 -0.02 -0.19 16 24 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 25 H 0.12 2.19 5.69 -2.38 -0.01 2.17 16 26 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 2.61 8.09 -2.39 -0.02 2.59 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.15 3.36 8.09 -2.39 -0.02 3.34 16 31 H 0.12 2.97 8.14 -2.38 -0.02 2.95 16 32 H 0.15 1.99 7.85 -2.39 -0.02 1.97 16 33 H 0.16 2.36 7.05 -2.39 -0.02 2.34 16 Total: -1.00 -72.40 282.81 0.50 -71.91 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.09 Total: 9.25 kcal Atomic # 6 Polarization: -67.45 SS G_CDS: 2.17 Total: -65.28 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: 0.28 Total: -55.87 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -4.65 Total: -55.42 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 50.06 SS G_CDS: -0.43 Total: 49.63 kcal Total: -72.40 0.50 -71.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260356818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.373 kcal (2) G-P(sol) polarization free energy of solvation -72.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds