Wall clock time and date at job start Mon Mar 30 2020 04:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 119.99840 * 2 1 4 4 H 1.48505 * 109.46970 * 269.99796 * 3 2 1 5 5 H 1.48498 * 109.47485 * 30.00455 * 3 2 1 6 6 H 1.48502 * 109.46873 * 150.00592 * 3 2 1 7 7 C 1.37876 * 119.99570 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99542 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00615 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47461 * 183.50302 * 9 7 2 11 11 H 1.09004 * 109.47215 * 177.21965 * 10 9 7 12 12 C 1.53002 * 109.47589 * 57.21188 * 10 9 7 13 13 C 1.53001 * 117.49875 * 133.97277 * 12 10 9 14 14 C 1.52998 * 117.49290 * 65.35084 * 12 10 9 15 15 C 1.53002 * 109.46755 * 297.21327 * 10 9 7 16 16 H 1.09005 * 112.49442 * 74.78034 * 15 10 9 17 17 C 1.53041 * 113.15073 * 304.99829 * 15 10 9 18 18 C 1.53043 * 89.86895 * 211.84407 * 17 15 10 19 19 S 1.81432 * 113.14659 * 204.59922 * 15 10 9 20 20 O 1.42099 * 112.75215 * 251.98608 * 19 15 10 21 21 O 1.42097 * 112.75516 * 35.74039 * 19 15 10 22 22 H 0.96996 * 120.00231 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.47166 * 63.49880 * 9 7 2 24 24 H 1.09003 * 109.46785 * 303.49862 * 9 7 2 25 25 H 1.09001 * 115.54934 * 279.68651 * 12 10 9 26 26 H 1.09000 * 117.49518 * 0.02562 * 13 12 10 27 27 H 1.08990 * 117.49700 * 145.02688 * 13 12 10 28 28 H 1.08998 * 117.49855 * 214.97994 * 14 12 10 29 29 H 1.09003 * 117.50306 * 359.97438 * 14 12 10 30 30 H 1.08996 * 113.15108 * 327.10062 * 17 15 10 31 31 H 1.09004 * 113.14637 * 96.54996 * 17 15 10 32 32 H 1.09000 * 113.14552 * 148.15094 * 18 17 15 33 33 H 1.08993 * 113.14985 * 277.64221 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2429 -3.6608 0.0870 11 1 1.6962 -4.6025 0.1367 12 6 3.1033 -3.5035 1.3423 13 6 3.3096 -4.7417 2.2171 14 6 2.4010 -3.6084 2.6976 15 6 3.1420 -3.6580 -1.1511 16 1 3.8932 -2.8688 -1.1191 17 6 2.3572 -3.6888 -2.4646 18 6 3.4906 -4.4822 -3.1190 19 16 3.8366 -5.2903 -1.5318 20 8 5.2267 -5.3753 -1.2499 21 8 2.9351 -6.3512 -1.2472 22 1 -0.4850 0.8400 0.0004 23 1 0.6719 -2.5844 -0.9200 24 1 0.5785 -2.5304 0.8567 25 1 3.9333 -2.8020 1.2585 26 1 2.8328 -5.6685 1.8979 27 1 4.2756 -4.8551 2.7088 28 1 2.7693 -2.9762 3.5055 29 1 1.3260 -3.7890 2.6948 30 1 1.4259 -4.2507 -2.3943 31 1 2.2163 -2.7008 -2.9028 32 1 3.1420 -5.1746 -3.8853 33 1 4.3094 -3.8524 -3.4665 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260518638.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:29 Heat of formation + Delta-G solvation = -37.577249 kcal Electronic energy + Delta-G solvation = -16482.478034 eV Core-core repulsion = 13829.798278 eV Total energy + Delta-G solvation = -2652.679756 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 244.092 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.22640 -36.94646 -35.95032 -35.52050 -33.05126 -30.73119 -26.64024 -23.97911 -22.89473 -21.73472 -21.17828 -19.15066 -18.50430 -16.74470 -16.28956 -16.01110 -15.58147 -14.76989 -14.51707 -13.96093 -13.83664 -13.10460 -12.54144 -12.23665 -12.18631 -11.95109 -11.91582 -11.50180 -11.32411 -11.03525 -11.02126 -10.77541 -10.62810 -10.43526 -10.12158 -9.96220 -9.73561 -9.49018 -8.95959 -8.81807 -8.37922 -6.02179 -4.02380 0.49330 2.34938 3.27817 3.35845 3.37882 3.96780 4.26004 4.40319 4.43152 4.65753 5.05674 5.16264 5.27470 5.34315 5.47016 5.50120 5.60775 5.73735 5.95229 6.06278 6.10937 6.25357 6.35613 6.44861 6.51261 6.63995 6.86846 6.92830 7.60325 7.71408 7.95501 8.39919 9.02082 9.60586 11.09158 Molecular weight = 244.09amu Principal moments of inertia in cm(-1) A = 0.025198 B = 0.008730 C = 0.007548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.951116 B = 3206.697320 C = 3708.749248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.503 4.503 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.039 4.039 11 H 0.062 0.938 12 C -0.129 4.129 13 C -0.217 4.217 14 C -0.158 4.158 15 C -0.507 4.507 16 H 0.150 0.850 17 C -0.086 4.086 18 C -0.604 4.604 19 S 2.368 3.632 20 O -0.941 6.941 21 O -0.923 6.923 22 H 0.259 0.741 23 H 0.020 0.980 24 H 0.024 0.976 25 H 0.107 0.893 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 -8.153 -3.052 10.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.542 4.542 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.059 4.059 11 H 0.081 0.919 12 C -0.147 4.147 13 C -0.254 4.254 14 C -0.195 4.195 15 C -0.618 4.618 16 H 0.167 0.833 17 C -0.126 4.126 18 C -0.732 4.732 19 S 2.553 3.447 20 O -0.938 6.938 21 O -0.920 6.920 22 H 0.069 0.931 23 H 0.039 0.961 24 H 0.042 0.958 25 H 0.125 0.875 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.014 -9.087 -2.566 11.195 hybrid contribution 0.047 2.093 -0.508 2.155 sum 6.061 -6.993 -3.075 9.752 Atomic orbital electron populations 1.69950 1.05948 1.26435 1.51224 1.24982 0.94738 0.98974 0.95719 0.86714 0.79938 0.84082 0.77967 1.20883 1.21416 1.19978 1.21138 0.92852 0.90527 1.49669 0.92559 1.19100 0.92843 0.90654 0.97549 1.20672 0.95384 1.01366 0.88433 0.91927 1.22312 1.01811 0.98591 0.92028 1.23256 1.01607 0.93804 1.06693 1.22692 0.98474 1.00538 0.97835 1.30652 1.09248 1.19731 1.02204 0.83251 1.21864 0.95561 1.03435 0.91698 1.30879 1.08737 1.12555 1.21050 1.09883 0.74921 0.79219 0.80699 1.93568 1.30599 1.88131 1.81533 1.93646 1.65305 1.51613 1.81417 0.93126 0.96134 0.95754 0.87481 0.89178 0.89305 0.89327 0.88841 0.88249 0.86866 0.86608 0.84469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.88 20.78 29.54 -169.99 -5.02 15.75 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.50 -12.74 7.94 -34.44 -0.27 -13.02 16 8 H 0.06 1.38 6.31 -52.49 -0.33 1.04 16 9 C 0.04 0.85 4.41 -27.89 -0.12 0.72 16 10 C -0.04 -0.74 2.06 -90.62 -0.19 -0.92 16 11 H 0.06 1.12 7.34 -51.93 -0.38 0.73 16 12 C -0.13 -2.33 4.20 -90.62 -0.38 -2.71 16 13 C -0.22 -3.41 10.18 -26.73 -0.27 -3.68 16 14 C -0.16 -2.71 9.86 -26.73 -0.26 -2.97 16 15 C -0.51 -8.12 2.50 -26.71 -0.07 -8.19 16 16 H 0.15 2.36 7.41 -51.93 -0.38 1.97 16 17 C -0.09 -1.25 5.92 -26.69 -0.16 -1.40 16 18 C -0.60 -7.05 7.98 37.18 0.30 -6.75 16 19 S 2.37 34.13 7.17 -107.50 -0.77 33.36 16 20 O -0.94 -15.83 18.18 -57.30 -1.04 -16.88 16 21 O -0.92 -15.40 17.60 -57.30 -1.01 -16.41 16 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 23 H 0.02 0.49 7.17 -51.93 -0.37 0.12 16 24 H 0.02 0.62 7.76 -51.93 -0.40 0.21 16 25 H 0.11 1.95 7.64 -51.93 -0.40 1.55 16 26 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 29 H 0.09 1.63 7.98 -51.93 -0.41 1.22 16 30 H 0.10 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.11 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.14 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 284.42 15.07 4.29 4.29 Total: -1.00 -31.31 284.42 -9.12 -40.43 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.77 Total: 1.78 kcal Atomic # 6 Polarization: -35.98 SS G_CDS: -1.52 Total: -37.50 kcal Atomic # 7 Polarization: -25.56 SS G_CDS: 0.74 Total: -24.82 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -2.05 Total: -33.28 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 34.13 SS G_CDS: -0.77 Total: 33.36 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.31 -9.12 -40.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260518638.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.852 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds